Wall clock time and date at job start Tue Mar 31 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30455 * 126.17610 * 2 1 4 4 N 1.28666 * 109.52485 * 179.69157 * 3 2 1 5 5 C 1.31347 * 109.23210 * 0.44864 * 4 3 2 6 6 C 1.47635 * 126.38449 * 179.82537 * 5 4 3 7 7 C 1.39806 * 119.99703 * 359.68731 * 6 5 4 8 8 C 1.36577 * 120.00899 * 180.02562 * 7 6 5 9 9 C 1.39851 * 119.99257 * 359.97438 * 8 7 6 10 10 C 1.47685 * 120.00681 * 179.97438 * 9 8 7 11 11 C 1.39183 * 120.32945 * 310.25623 * 10 9 8 12 12 C 1.38303 * 119.94988 * 180.32028 * 11 10 9 13 13 F 1.35102 * 119.69100 * 179.71868 * 12 11 10 14 14 C 1.39257 * 120.62843 * 359.69373 * 12 11 10 15 15 C 1.36321 * 120.67544 * 359.97438 * 14 12 11 16 16 C 1.40813 * 120.01909 * 0.02562 * 15 14 12 17 17 C 1.40756 * 120.30401 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99338 * 152.76968 * 17 16 15 19 19 C 1.40038 * 120.00026 * 333.05311 * 17 16 15 20 20 N 1.30798 * 120.00308 * 344.27911 * 19 17 16 21 21 Si 1.86803 * 119.99930 * 164.28152 * 19 17 16 22 22 H 1.48505 * 109.46920 * 59.99743 * 21 19 17 23 23 H 1.48504 * 109.47278 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47338 * 299.99911 * 21 19 17 25 25 C 1.39850 * 119.98813 * 0.25327 * 9 8 7 26 26 C 1.36576 * 119.99896 * 359.50915 * 25 9 8 27 27 O 1.34388 * 126.17967 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47158 * 270.04148 * 1 2 3 29 29 H 1.09005 * 109.47175 * 30.03760 * 1 2 3 30 30 H 1.08998 * 109.47378 * 150.04213 * 1 2 3 31 31 H 1.08004 * 119.99839 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.00672 * 180.02562 * 8 7 6 33 33 H 1.08005 * 120.02635 * 359.97438 * 11 10 9 34 34 H 1.08004 * 119.66671 * 179.97438 * 14 12 11 35 35 H 1.07999 * 119.99113 * 179.97438 * 15 14 12 36 36 H 0.97003 * 119.99900 * 180.02562 * 20 19 17 37 37 H 1.07999 * 119.99835 * 179.74782 * 25 9 8 38 38 H 1.07993 * 120.00137 * 180.20689 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2770 1.0530 0.0000 4 7 3.5097 0.6844 0.0065 5 6 3.5689 -0.6278 0.0012 6 6 4.7957 -1.4491 0.0022 7 6 6.0501 -0.8318 0.0026 8 6 7.1852 -1.5914 0.0029 9 6 7.0925 -2.9868 0.0033 10 6 8.3197 -3.8085 0.0031 11 6 9.3353 -3.5547 -0.9142 12 6 10.4783 -4.3333 -0.9118 13 9 11.4584 -4.0860 -1.8082 14 6 10.6290 -5.3695 0.0063 15 6 9.6534 -5.6362 0.9204 16 6 8.4781 -4.8609 0.9427 17 6 7.4667 -5.1314 1.8836 18 1 6.8079 -4.3404 2.2105 19 6 7.3185 -6.4245 2.4002 20 7 7.8937 -7.4368 1.8041 21 14 6.2993 -6.7039 3.9405 22 1 4.9054 -6.2514 3.7004 23 1 6.2986 -8.1500 4.2782 24 1 6.8830 -5.9323 5.0670 25 6 5.8376 -3.6041 -0.0019 26 6 4.7028 -2.8441 0.0027 27 8 2.3003 -1.0847 0.0005 28 1 -0.3633 0.0007 1.0277 29 1 -0.3634 0.8897 -0.5144 30 1 -0.3634 -0.8903 -0.5132 31 1 6.1216 0.2459 0.0027 32 1 8.1542 -1.1145 0.0036 33 1 9.2284 -2.7539 -1.6310 34 1 11.5279 -5.9681 -0.0059 35 1 9.7816 -6.4428 1.6270 36 1 7.7907 -8.3326 2.1618 37 1 5.7659 -4.6817 -0.0057 38 1 3.7338 -3.3207 0.0020 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239019124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:12 Heat of formation + Delta-G solvation = 11.353862 kcal Electronic energy + Delta-G solvation = -25434.224007 eV Core-core repulsion = 21542.618706 eV Total energy + Delta-G solvation = -3891.605301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.31885 -45.18896 -40.59946 -38.90651 -37.26337 -35.58177 -34.63957 -33.02794 -32.25462 -31.26902 -30.61999 -28.55626 -27.06070 -25.38070 -24.22876 -23.34414 -23.12982 -22.45087 -21.66006 -19.36893 -18.79800 -18.50200 -18.15229 -17.35113 -17.15492 -16.55181 -16.16015 -16.11245 -15.92148 -15.66279 -15.29606 -14.71940 -14.50821 -14.40551 -14.35112 -14.06039 -13.79104 -13.62329 -13.58806 -13.42568 -13.17106 -13.02902 -12.87375 -12.79506 -12.57705 -12.27090 -12.13663 -11.90881 -11.81095 -11.35466 -11.07829 -11.07025 -10.00932 -9.84197 -9.31094 -9.03909 -8.70601 -6.36262 -0.63042 0.45742 0.52483 0.78895 0.97528 1.16790 1.40816 1.43849 1.48284 1.51382 2.17150 2.59316 2.78634 2.84238 3.35545 3.54550 3.78471 3.83539 3.98193 4.09042 4.12364 4.24251 4.28449 4.38713 4.43839 4.52696 4.57840 4.65890 4.72684 4.90721 4.98485 5.05793 5.07438 5.12333 5.23860 5.31855 5.39712 5.52807 5.62611 5.75190 5.87762 5.95624 6.03280 6.21096 6.53488 6.80207 6.86635 7.17658 8.21599 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003730 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.654566 B = 7505.441795 C = 9527.620472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.166 3.834 3 N -0.324 5.324 4 N -0.310 5.310 5 C 0.220 3.780 6 C -0.067 4.067 7 C -0.057 4.057 8 C -0.130 4.130 9 C 0.033 3.967 10 C -0.180 4.180 11 C -0.092 4.092 12 C -0.059 4.059 13 F -0.170 7.170 14 C -0.125 4.125 15 C -0.154 4.154 16 C 0.103 3.897 17 C -0.457 4.457 18 H 0.086 0.914 19 C 0.045 3.955 20 N -0.807 5.807 21 Si 0.969 3.031 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.108 4.108 26 C -0.075 4.075 27 O -0.227 6.227 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.294 0.706 37 H 0.126 0.874 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 6.062 -0.393 13.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.045 4.045 3 N -0.170 5.170 4 N -0.157 5.157 5 C 0.012 3.988 6 C -0.069 4.069 7 C -0.076 4.076 8 C -0.148 4.148 9 C 0.033 3.967 10 C -0.182 4.182 11 C -0.111 4.111 12 C -0.079 4.079 13 F -0.150 7.150 14 C -0.144 4.144 15 C -0.173 4.173 16 C 0.100 3.900 17 C -0.485 4.485 18 H 0.104 0.896 19 C -0.173 4.173 20 N -0.431 5.431 21 Si 0.790 3.210 22 H -0.182 1.182 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.126 4.126 26 C -0.095 4.095 27 O -0.107 6.107 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.144 0.856 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.038 7.079 -0.423 13.971 hybrid contribution -0.050 -1.642 0.383 1.686 sum -12.088 5.437 -0.040 13.254 Atomic orbital electron populations 1.20751 0.76059 1.07465 1.07038 1.29176 0.99468 0.78491 0.97330 1.74315 0.96185 1.26928 1.19598 1.74681 1.12767 1.08899 1.19344 1.25593 0.83910 0.90213 0.99081 1.17297 0.86663 0.91528 1.11370 1.20816 0.89717 1.00815 0.96283 1.21113 0.99054 0.92335 1.02257 1.19037 0.92531 0.92727 0.92455 1.18566 0.95046 1.03780 1.00787 1.20774 0.92083 0.98915 0.99333 1.17319 0.89610 1.04001 0.96956 1.91297 1.61824 1.94581 1.67256 1.20688 1.00129 0.97226 0.96392 1.20933 0.93185 1.02572 1.00592 1.17871 0.92192 0.89522 0.90457 1.19701 1.13457 0.95592 1.19738 0.89643 1.26654 0.96087 0.95051 0.99505 1.69796 1.35422 1.01261 1.36649 0.85413 0.79310 0.78309 0.77951 1.18170 1.19214 1.18717 1.21012 0.91132 1.00615 0.99811 1.20936 0.99527 0.91447 0.97579 1.84850 1.17001 1.38576 1.70285 0.86229 0.85941 0.86753 0.83752 0.84096 0.85684 0.86477 0.86401 0.89493 0.85574 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 71.24 0.75 0.23 16 2 C 0.17 3.77 8.47 88.31 0.75 4.52 16 3 N -0.32 -9.59 12.22 -165.29 -2.02 -11.61 16 4 N -0.31 -10.27 11.91 -166.31 -1.98 -12.25 16 5 C 0.22 6.85 7.98 87.25 0.70 7.54 16 6 C -0.07 -2.09 5.88 -20.04 -0.12 -2.21 16 7 C -0.06 -1.75 9.64 22.26 0.21 -1.53 16 8 C -0.13 -4.26 9.45 22.27 0.21 -4.05 16 9 C 0.03 1.27 4.93 -20.00 -0.10 1.17 16 10 C -0.18 -7.81 5.52 -19.63 -0.11 -7.92 16 11 C -0.09 -3.88 9.47 22.51 0.21 -3.66 16 12 C -0.06 -2.61 7.30 22.53 0.16 -2.44 16 13 F -0.17 -7.23 17.26 44.97 0.78 -6.46 16 14 C -0.13 -5.58 9.94 22.07 0.22 -5.36 16 15 C -0.15 -7.30 8.61 22.45 0.19 -7.11 16 16 C 0.10 4.87 5.55 -21.11 -0.12 4.75 16 17 C -0.46 -21.13 7.09 23.32 0.17 -20.96 16 18 H 0.09 3.87 6.69 -2.91 -0.02 3.85 16 19 C 0.05 1.98 5.16 85.28 0.44 2.42 16 20 N -0.81 -37.01 10.99 21.84 0.24 -36.77 16 21 Si 0.97 33.93 29.59 68.60 2.03 35.96 16 22 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 23 H -0.27 -8.95 7.11 99.48 0.71 -8.25 16 24 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 25 C -0.11 -3.89 7.97 22.27 0.18 -3.71 16 26 C -0.08 -2.36 9.67 22.26 0.22 -2.15 16 27 O -0.23 -6.15 10.65 -8.65 -0.09 -6.24 16 28 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.14 4.00 7.85 -2.91 -0.02 3.98 16 32 H 0.14 4.21 8.03 -2.91 -0.02 4.18 16 33 H 0.13 4.65 8.04 -2.91 -0.02 4.62 16 34 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 35 H 0.12 5.75 6.25 -2.91 -0.02 5.73 16 36 H 0.29 12.24 8.30 -92.71 -0.77 11.47 16 37 H 0.13 4.89 7.32 -2.91 -0.02 4.87 16 38 H 0.14 3.81 7.92 -2.91 -0.02 3.79 16 Total: -1.00 -57.57 339.95 4.04 -53.54 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 1.12 Total: 24.30 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 3.96 Total: -40.48 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -3.76 Total: -60.62 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.09 Total: -6.24 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.78 Total: -6.46 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 2.03 Total: 35.96 kcal Total: -57.57 4.04 -53.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239019124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.893 kcal (2) G-P(sol) polarization free energy of solvation -57.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds