Wall clock time and date at job start Tue Mar 31 2020 14:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30396 * 126.18627 * 2 1 4 4 N 1.28668 * 109.53171 * 179.70732 * 3 2 1 5 5 C 1.31288 * 109.24384 * 0.44616 * 4 3 2 6 6 C 1.47729 * 126.38332 * 179.82320 * 5 4 3 7 7 C 1.39676 * 120.02598 * 359.69074 * 6 5 4 8 8 C 1.37671 * 119.98518 * 180.02562 * 7 6 5 9 9 C 1.39503 * 120.01781 * 359.97438 * 8 7 6 10 10 C 1.48273 * 119.97753 * 179.97438 * 9 8 7 11 11 C 1.38736 * 120.01691 * 130.00304 * 10 9 8 12 12 C 1.40533 * 119.64760 * 179.97438 * 11 10 9 13 13 C 1.41352 * 120.15254 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99974 * 154.65551 * 13 12 11 15 15 C 1.39897 * 119.99512 * 334.65691 * 13 12 11 16 16 N 1.30866 * 120.00383 * 342.89197 * 15 13 12 17 17 Si 1.86803 * 119.99507 * 162.89592 * 15 13 12 18 18 H 1.48497 * 109.47343 * 60.00231 * 17 15 13 19 19 H 1.48503 * 109.47012 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47025 * 299.99691 * 17 15 13 21 21 C 1.40852 * 119.69814 * 359.97438 * 12 11 10 22 22 C 1.37569 * 120.03479 * 359.97438 * 21 12 11 23 23 C 1.38752 * 120.35247 * 0.26001 * 22 21 12 24 24 F 1.35092 * 119.84473 * 179.72384 * 23 22 21 25 25 C 1.39499 * 120.04395 * 0.28087 * 9 8 7 26 26 C 1.37677 * 120.02079 * 359.48137 * 25 9 8 27 27 O 1.34426 * 126.17765 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47249 * 270.02516 * 1 2 3 29 29 H 1.08998 * 109.47137 * 30.01814 * 1 2 3 30 30 H 1.08995 * 109.47661 * 150.02451 * 1 2 3 31 31 H 1.08003 * 120.00733 * 0.04172 * 7 6 5 32 32 H 1.07998 * 119.99547 * 179.97438 * 8 7 6 33 33 H 1.08006 * 120.18130 * 359.95504 * 11 10 9 34 34 H 0.96994 * 119.99679 * 180.02562 * 16 15 13 35 35 H 1.07997 * 119.98477 * 179.97438 * 21 12 11 36 36 H 1.07999 * 119.82315 * 179.97438 * 22 21 12 37 37 H 1.07999 * 119.98656 * 179.74568 * 25 9 8 38 38 H 1.08000 * 120.01290 * 180.23438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2768 1.0524 0.0000 4 7 3.5095 0.6837 0.0062 5 6 3.5688 -0.6278 0.0007 6 6 4.7965 -1.4495 0.0012 7 6 6.0500 -0.8332 0.0014 8 6 7.1936 -1.5998 0.0014 9 6 7.1007 -2.9917 0.0016 10 6 8.3330 -3.8164 0.0009 11 6 8.4808 -4.8440 0.9211 12 6 9.6517 -5.6212 0.9132 13 6 9.8133 -6.6712 1.8456 14 1 10.4625 -7.5029 1.6151 15 6 9.1321 -6.6330 3.0670 16 7 8.6227 -5.5069 3.4972 17 14 8.9499 -8.1894 4.0838 18 1 10.2949 -8.7088 4.4392 19 1 8.1939 -7.8841 5.3250 20 1 8.2165 -9.2123 3.2958 21 6 10.6630 -5.3497 -0.0288 22 6 10.5026 -4.3282 -0.9362 23 6 9.3494 -3.5567 -0.9268 24 9 9.2051 -2.5526 -1.8189 25 6 5.8494 -3.6082 -0.0040 26 6 4.7046 -2.8433 0.0010 27 8 2.3004 -1.0851 0.0005 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 6.1221 0.2444 0.0020 32 1 8.1628 -1.1234 0.0011 33 1 7.7004 -5.0456 1.6401 34 1 8.1508 -5.4804 4.3442 35 1 11.5649 -5.9437 -0.0387 36 1 11.2805 -4.1228 -1.6567 37 1 5.7786 -4.6859 -0.0080 38 1 3.7359 -3.3208 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239019557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:44 Heat of formation + Delta-G solvation = 26.639606 kcal Electronic energy + Delta-G solvation = -25264.538458 eV Core-core repulsion = 21373.595997 eV Total energy + Delta-G solvation = -3890.942461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.62636 -44.17189 -39.12991 -37.33788 -36.22114 -33.99850 -33.45078 -31.95828 -30.90440 -29.54021 -29.32711 -27.39172 -25.26082 -24.25966 -23.12148 -22.16073 -21.88410 -21.00604 -20.20306 -17.82486 -17.51221 -17.48495 -16.41194 -16.15584 -15.63721 -15.31872 -15.09460 -14.65073 -14.48920 -14.11265 -13.89735 -13.67420 -13.36240 -13.27091 -13.05831 -12.85331 -12.70808 -12.44770 -12.14747 -12.06684 -11.94598 -11.68091 -11.33328 -11.23245 -11.19541 -10.99977 -10.86869 -10.43719 -10.22663 -9.95913 -9.70794 -9.32581 -8.81926 -8.52924 -7.61443 -7.42285 -6.97039 -4.56194 0.48030 1.59177 1.60483 2.10656 2.32306 2.55574 2.70254 2.96693 2.97446 3.02828 3.69265 3.77909 3.97520 4.24135 4.34128 4.68450 4.93630 5.01279 5.07362 5.12110 5.19098 5.29772 5.33452 5.38694 5.56775 5.57622 5.66536 5.74467 5.94539 5.97274 6.21430 6.43772 6.49409 6.56789 6.70498 6.75117 6.93988 6.97974 7.06234 7.22495 7.48792 7.58386 7.76751 7.96313 8.21572 8.31624 8.61761 8.64866 9.97037 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.003132 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.138500 B = 8936.570897 C =10507.322660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.148 3.852 3 N -0.286 5.286 4 N -0.287 5.287 5 C 0.230 3.770 6 C -0.056 4.056 7 C -0.062 4.062 8 C -0.108 4.108 9 C 0.025 3.975 10 C -0.082 4.082 11 C -0.116 4.116 12 C 0.100 3.900 13 C -0.455 4.455 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.788 5.788 17 Si 0.911 3.089 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.197 4.197 22 C -0.117 4.117 23 C -0.028 4.028 24 F -0.167 7.167 25 C -0.113 4.113 26 C -0.080 4.080 27 O -0.223 6.223 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.285 0.715 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 3.984 -3.285 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 N -0.134 5.134 4 N -0.134 5.134 5 C 0.024 3.976 6 C -0.058 4.058 7 C -0.081 4.081 8 C -0.126 4.126 9 C 0.024 3.976 10 C -0.083 4.083 11 C -0.136 4.136 12 C 0.097 3.903 13 C -0.483 4.483 14 H 0.101 0.899 15 C -0.144 4.144 16 N -0.413 5.413 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.217 4.217 22 C -0.136 4.136 23 C -0.048 4.048 24 F -0.146 7.146 25 C -0.131 4.131 26 C -0.100 4.100 27 O -0.103 6.103 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.153 0.847 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.669 5.399 -3.093 13.224 hybrid contribution -0.432 -1.643 0.462 1.761 sum -12.101 3.756 -2.631 12.941 Atomic orbital electron populations 1.20313 0.80274 1.05564 1.05127 1.27952 0.97735 0.79642 1.00877 1.74355 0.96256 1.25670 1.17096 1.74748 1.11638 1.08395 1.18641 1.25640 0.83349 0.90377 0.98265 1.17164 0.86365 0.91428 1.10847 1.20999 0.89909 1.00487 0.96689 1.21217 0.98389 0.92939 1.00088 1.19214 0.93162 0.92886 0.92348 1.18498 0.92299 0.98817 0.98705 1.21366 0.98803 0.95352 0.98056 1.17585 0.89798 0.91725 0.91198 1.19556 1.23855 1.05610 0.99322 0.89935 1.25952 0.93146 0.97252 0.98090 1.69787 1.26106 1.25942 1.19426 0.86304 0.79631 0.81809 0.78740 1.18848 1.20195 1.18649 1.20938 0.99373 1.00593 1.00770 1.20479 0.95710 0.97232 1.00227 1.17205 0.98078 0.93769 0.95730 1.91300 1.96374 1.59600 1.67320 1.21188 0.90784 1.00474 1.00619 1.21054 0.99150 0.91592 0.98159 1.84834 1.17313 1.37966 1.70179 0.88431 0.87646 0.88966 0.84626 0.84799 0.85059 0.90373 0.87747 0.87745 0.84741 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.33 10.51 36.00 0.38 0.05 16 2 C 0.15 1.78 8.47 -12.89 -0.11 1.67 16 3 N -0.29 -4.32 12.22 32.58 0.40 -3.92 16 4 N -0.29 -4.78 11.91 32.06 0.38 -4.40 16 5 C 0.23 3.61 7.98 -13.91 -0.11 3.50 16 6 C -0.06 -0.88 5.88 -104.94 -0.62 -1.50 16 7 C -0.06 -0.98 9.68 -39.25 -0.38 -1.36 16 8 C -0.11 -1.90 8.83 -39.32 -0.35 -2.25 16 9 C 0.02 0.47 5.32 -104.83 -0.56 -0.09 16 10 C -0.08 -1.79 5.47 -104.91 -0.57 -2.36 16 11 C -0.12 -2.73 8.13 -38.53 -0.31 -3.05 16 12 C 0.10 2.41 5.56 -106.86 -0.59 1.81 16 13 C -0.45 -10.93 9.05 -37.78 -0.34 -11.27 16 14 H 0.08 1.89 7.90 -52.49 -0.41 1.48 16 15 C 0.07 1.71 5.14 -17.34 -0.09 1.62 16 16 N -0.79 -18.75 10.96 55.54 0.61 -18.15 16 17 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 16 18 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.28 -5.15 7.11 56.52 0.40 -4.74 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 C -0.20 -4.40 9.78 -38.84 -0.38 -4.78 16 22 C -0.12 -2.50 9.99 -39.64 -0.40 -2.89 16 23 C -0.03 -0.61 7.18 -38.71 -0.28 -0.89 16 24 F -0.17 -3.52 15.84 2.25 0.04 -3.48 16 25 C -0.11 -1.90 9.48 -39.32 -0.37 -2.27 16 26 C -0.08 -1.20 9.71 -39.25 -0.38 -1.58 16 27 O -0.22 -3.08 10.66 3.91 0.04 -3.04 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.14 1.98 7.85 -52.48 -0.41 1.56 16 32 H 0.13 2.31 7.75 -52.49 -0.41 1.90 16 33 H 0.13 3.15 6.16 -52.48 -0.32 2.83 16 34 H 0.29 6.23 8.30 -40.82 -0.34 5.90 16 35 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.13 2.14 8.03 -52.49 -0.42 1.72 16 38 H 0.13 1.61 7.92 -52.49 -0.42 1.19 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -27.74 343.11 -7.50 -35.24 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.64 Total: 6.06 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -5.46 Total: -25.65 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 1.39 Total: -26.47 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.04 Total: -3.48 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.74 -7.50 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239019557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.881 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds