Wall clock time and date at job start Tue Mar 31 2020 14:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30396 * 126.18627 * 2 1 4 4 N 1.28668 * 109.53171 * 179.70732 * 3 2 1 5 5 C 1.31288 * 109.24384 * 0.44616 * 4 3 2 6 6 C 1.47729 * 126.38332 * 179.82320 * 5 4 3 7 7 C 1.39676 * 120.02598 * 359.69074 * 6 5 4 8 8 C 1.37671 * 119.98518 * 180.02562 * 7 6 5 9 9 C 1.39503 * 120.01781 * 359.97438 * 8 7 6 10 10 C 1.48273 * 119.97753 * 179.97438 * 9 8 7 11 11 C 1.38736 * 120.01691 * 130.00304 * 10 9 8 12 12 C 1.40533 * 119.64760 * 179.97438 * 11 10 9 13 13 C 1.41352 * 120.15254 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99974 * 154.65551 * 13 12 11 15 15 C 1.39897 * 119.99512 * 334.65691 * 13 12 11 16 16 N 1.30866 * 120.00383 * 342.89197 * 15 13 12 17 17 Si 1.86803 * 119.99507 * 162.89592 * 15 13 12 18 18 H 1.48497 * 109.47343 * 60.00231 * 17 15 13 19 19 H 1.48503 * 109.47012 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47025 * 299.99691 * 17 15 13 21 21 C 1.40852 * 119.69814 * 359.97438 * 12 11 10 22 22 C 1.37569 * 120.03479 * 359.97438 * 21 12 11 23 23 C 1.38752 * 120.35247 * 0.26001 * 22 21 12 24 24 F 1.35092 * 119.84473 * 179.72384 * 23 22 21 25 25 C 1.39499 * 120.04395 * 0.28087 * 9 8 7 26 26 C 1.37677 * 120.02079 * 359.48137 * 25 9 8 27 27 O 1.34426 * 126.17765 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47249 * 270.02516 * 1 2 3 29 29 H 1.08998 * 109.47137 * 30.01814 * 1 2 3 30 30 H 1.08995 * 109.47661 * 150.02451 * 1 2 3 31 31 H 1.08003 * 120.00733 * 0.04172 * 7 6 5 32 32 H 1.07998 * 119.99547 * 179.97438 * 8 7 6 33 33 H 1.08006 * 120.18130 * 359.95504 * 11 10 9 34 34 H 0.96994 * 119.99679 * 180.02562 * 16 15 13 35 35 H 1.07997 * 119.98477 * 179.97438 * 21 12 11 36 36 H 1.07999 * 119.82315 * 179.97438 * 22 21 12 37 37 H 1.07999 * 119.98656 * 179.74568 * 25 9 8 38 38 H 1.08000 * 120.01290 * 180.23438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2768 1.0524 0.0000 4 7 3.5095 0.6837 0.0062 5 6 3.5688 -0.6278 0.0007 6 6 4.7965 -1.4495 0.0012 7 6 6.0500 -0.8332 0.0014 8 6 7.1936 -1.5998 0.0014 9 6 7.1007 -2.9917 0.0016 10 6 8.3330 -3.8164 0.0009 11 6 8.4808 -4.8440 0.9211 12 6 9.6517 -5.6212 0.9132 13 6 9.8133 -6.6712 1.8456 14 1 10.4625 -7.5029 1.6151 15 6 9.1321 -6.6330 3.0670 16 7 8.6227 -5.5069 3.4972 17 14 8.9499 -8.1894 4.0838 18 1 10.2949 -8.7088 4.4392 19 1 8.1939 -7.8841 5.3250 20 1 8.2165 -9.2123 3.2958 21 6 10.6630 -5.3497 -0.0288 22 6 10.5026 -4.3282 -0.9362 23 6 9.3494 -3.5567 -0.9268 24 9 9.2051 -2.5526 -1.8189 25 6 5.8494 -3.6082 -0.0040 26 6 4.7046 -2.8433 0.0010 27 8 2.3004 -1.0851 0.0005 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5134 31 1 6.1221 0.2444 0.0020 32 1 8.1628 -1.1234 0.0011 33 1 7.7004 -5.0456 1.6401 34 1 8.1508 -5.4804 4.3442 35 1 11.5649 -5.9437 -0.0387 36 1 11.2805 -4.1228 -1.6567 37 1 5.7786 -4.6859 -0.0080 38 1 3.7359 -3.3208 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239019557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:43 Heat of formation + Delta-G solvation = 10.944013 kcal Electronic energy + Delta-G solvation = -25265.219070 eV Core-core repulsion = 21373.595997 eV Total energy + Delta-G solvation = -3891.623073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.33503 -45.25784 -40.50922 -38.98482 -37.32436 -35.61714 -34.71423 -33.13108 -32.20865 -31.27937 -30.61406 -28.52170 -27.00625 -25.56326 -24.26149 -23.56438 -23.13250 -22.55926 -21.74923 -19.33273 -18.87216 -18.56152 -18.05118 -17.38851 -17.26078 -16.82743 -16.39568 -16.24440 -15.84554 -15.38387 -15.33586 -14.75504 -14.59041 -14.47831 -14.32827 -13.92822 -13.84017 -13.70545 -13.61746 -13.53687 -13.21994 -13.07089 -12.94694 -12.77382 -12.57204 -12.43752 -12.14153 -11.96941 -11.78589 -11.39376 -11.25086 -10.99623 -10.10885 -9.93843 -9.33817 -9.04522 -8.68199 -6.37505 -0.74048 0.30341 0.38098 0.80094 0.92334 1.08070 1.34740 1.42073 1.50395 1.54205 2.20502 2.55055 2.69224 2.71545 3.29447 3.53934 3.64529 3.73870 3.83482 3.89856 3.99584 4.12464 4.26169 4.31824 4.34586 4.46971 4.56828 4.61047 4.70670 4.85123 4.92453 4.98996 5.04165 5.10709 5.14721 5.20759 5.24815 5.44692 5.53196 5.69337 5.77636 5.84220 6.00051 6.22383 6.54542 6.85032 6.87427 7.12016 8.27363 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.003132 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.138500 B = 8936.570897 C =10507.322660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.171 3.829 3 N -0.324 5.324 4 N -0.307 5.307 5 C 0.216 3.784 6 C -0.050 4.050 7 C -0.060 4.060 8 C -0.113 4.113 9 C -0.007 4.007 10 C -0.078 4.078 11 C -0.136 4.136 12 C 0.074 3.926 13 C -0.485 4.485 14 H 0.085 0.915 15 C 0.038 3.962 16 N -0.818 5.818 17 Si 0.981 3.019 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.258 1.258 21 C -0.208 4.208 22 C -0.116 4.116 23 C -0.040 4.040 24 F -0.163 7.163 25 C -0.114 4.114 26 C -0.069 4.069 27 O -0.224 6.224 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.291 0.709 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 3.764 -3.257 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.039 4.039 3 N -0.171 5.171 4 N -0.153 5.153 5 C 0.008 3.992 6 C -0.052 4.052 7 C -0.079 4.079 8 C -0.131 4.131 9 C -0.008 4.008 10 C -0.079 4.079 11 C -0.155 4.155 12 C 0.071 3.929 13 C -0.513 4.513 14 H 0.103 0.897 15 C -0.178 4.178 16 N -0.443 5.443 17 Si 0.802 3.198 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.182 1.182 21 C -0.228 4.228 22 C -0.135 4.135 23 C -0.060 4.060 24 F -0.142 7.142 25 C -0.132 4.132 26 C -0.089 4.089 27 O -0.104 6.104 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.165 0.835 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.899 5.205 -3.082 15.159 hybrid contribution 0.092 -1.426 0.387 1.480 sum -13.808 3.779 -2.695 14.567 Atomic orbital electron populations 1.20779 0.75875 1.07584 1.07145 1.29221 0.99489 0.78399 0.96758 1.74322 0.96065 1.26972 1.19712 1.74677 1.12943 1.08989 1.18719 1.25452 0.83918 0.90178 0.99677 1.17278 0.86544 0.91832 1.09531 1.21069 0.89632 1.00940 0.96308 1.21186 0.98913 0.92492 1.00501 1.19237 0.93017 0.93342 0.95207 1.18705 0.93315 0.98210 0.97634 1.21271 0.98688 0.96732 0.98823 1.17962 0.90575 0.92327 0.92020 1.19825 1.25184 1.06054 1.00255 0.89678 1.26740 0.92254 1.00058 0.98754 1.69850 1.26636 1.27759 1.20064 0.85255 0.79649 0.77783 0.77157 1.18415 1.19533 1.18236 1.21133 0.99618 1.01229 1.00776 1.20756 0.96118 0.96407 1.00225 1.17419 0.98549 0.94093 0.95968 1.91301 1.96394 1.59417 1.67112 1.21263 0.90594 1.00918 1.00404 1.21259 0.99685 0.91222 0.96718 1.84853 1.16765 1.38531 1.70245 0.86105 0.85924 0.86554 0.83500 0.85142 0.86243 0.89853 0.86406 0.85091 0.84303 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 71.23 0.75 0.30 16 2 C 0.17 3.67 8.47 88.32 0.75 4.42 16 3 N -0.32 -9.31 12.22 -165.31 -2.02 -11.33 16 4 N -0.31 -9.94 11.91 -166.31 -1.98 -11.92 16 5 C 0.22 6.47 7.98 87.29 0.70 7.17 16 6 C -0.05 -1.53 5.88 -20.07 -0.12 -1.64 16 7 C -0.06 -1.91 9.68 22.48 0.22 -1.69 16 8 C -0.11 -4.02 8.83 22.44 0.20 -3.83 16 9 C -0.01 -0.28 5.32 -20.00 -0.11 -0.39 16 10 C -0.08 -3.47 5.47 -20.05 -0.11 -3.58 16 11 C -0.14 -6.60 8.13 22.95 0.19 -6.41 16 12 C 0.07 3.67 5.56 -21.31 -0.12 3.55 16 13 C -0.48 -23.83 9.05 23.44 0.21 -23.62 16 14 H 0.09 3.98 7.90 -2.91 -0.02 3.95 16 15 C 0.04 1.77 5.14 85.24 0.44 2.21 16 16 N -0.82 -39.78 10.96 21.82 0.24 -39.54 16 17 Si 0.98 35.16 29.59 68.60 2.03 37.19 16 18 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 19 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 20 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 21 C -0.21 -9.42 9.78 22.75 0.22 -9.20 16 22 C -0.12 -4.94 9.99 22.23 0.22 -4.72 16 23 C -0.04 -1.79 7.18 22.83 0.16 -1.63 16 24 F -0.16 -6.88 15.84 44.97 0.71 -6.17 16 25 C -0.11 -3.83 9.48 22.44 0.21 -3.62 16 26 C -0.07 -2.00 9.71 22.49 0.22 -1.78 16 27 O -0.22 -5.66 10.66 -8.92 -0.10 -5.75 16 28 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.15 4.25 7.85 -2.91 -0.02 4.23 16 32 H 0.13 4.62 7.75 -2.91 -0.02 4.60 16 33 H 0.12 6.00 6.16 -2.91 -0.02 5.98 16 34 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 35 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 36 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.14 4.46 8.03 -2.91 -0.02 4.44 16 38 H 0.16 3.55 7.92 -2.91 -0.02 3.53 16 Total: -1.00 -61.38 343.11 4.03 -57.35 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 1.11 Total: 24.63 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 4.03 Total: -44.46 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -3.76 Total: -62.79 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.10 Total: -5.75 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.71 Total: -6.17 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Total: -61.38 4.03 -57.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239019557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.294 kcal (2) G-P(sol) polarization free energy of solvation -61.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds