Wall clock time and date at job start Tue Mar 31 2020 14:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30446 * 126.18081 * 2 1 4 4 N 1.28663 * 109.52953 * 179.73028 * 3 2 1 5 5 C 1.31351 * 109.22944 * 0.37687 * 4 3 2 6 6 C 1.47632 * 126.38135 * 179.88542 * 5 4 3 7 7 C 1.39809 * 120.00265 * 359.69546 * 6 5 4 8 8 C 1.36582 * 120.00519 * 179.97438 * 7 6 5 9 9 C 1.39829 * 119.99390 * 0.02562 * 8 7 6 10 10 C 1.47755 * 119.99999 * 179.97438 * 9 8 7 11 11 C 1.40046 * 119.90563 * 310.27232 * 10 9 8 12 12 C 1.36161 * 120.13383 * 180.27763 * 11 10 9 13 13 C 1.41014 * 119.93643 * 359.45186 * 12 11 10 14 14 C 1.40965 * 120.09752 * 180.25382 * 13 12 11 15 15 H 1.08000 * 120.00187 * 150.08841 * 14 13 12 16 16 C 1.39992 * 119.99836 * 330.09593 * 14 13 12 17 17 N 1.30799 * 119.99956 * 161.73636 * 16 14 13 18 18 Si 1.86797 * 119.99819 * 341.72589 * 16 14 13 19 19 H 1.48504 * 109.46952 * 95.42588 * 18 16 14 20 20 H 1.48505 * 109.47421 * 215.42111 * 18 16 14 21 21 H 1.48493 * 109.47647 * 335.42207 * 18 16 14 22 22 C 1.40892 * 119.81044 * 0.27883 * 13 12 11 23 23 C 1.36435 * 119.86341 * 359.97438 * 22 13 12 24 24 F 1.35102 * 119.96536 * 180.02562 * 23 22 13 25 25 C 1.39832 * 120.00022 * 0.25811 * 9 8 7 26 26 C 1.36583 * 119.99294 * 359.45722 * 25 9 8 27 27 O 1.34397 * 126.17410 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46904 * 270.04988 * 1 2 3 29 29 H 1.09003 * 109.46648 * 30.04726 * 1 2 3 30 30 H 1.08999 * 109.47283 * 150.04617 * 1 2 3 31 31 H 1.07999 * 119.99485 * 0.02562 * 7 6 5 32 32 H 1.07994 * 120.00121 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.93374 * 0.02562 * 11 10 9 34 34 H 1.08002 * 120.03335 * 179.72444 * 12 11 10 35 35 H 0.97002 * 120.00229 * 179.97438 * 17 16 14 36 36 H 1.08005 * 120.06891 * 180.02562 * 22 13 12 37 37 H 1.07998 * 120.00358 * 179.73076 * 25 9 8 38 38 H 1.07999 * 119.99580 * 180.25461 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2771 1.0529 0.0000 4 7 3.5098 0.6842 0.0057 5 6 3.5689 -0.6279 0.0014 6 6 4.7956 -1.4493 0.0031 7 6 6.0501 -0.8321 0.0034 8 6 7.1851 -1.5919 0.0055 9 6 7.0923 -2.9871 0.0068 10 6 8.3200 -3.8092 0.0085 11 6 9.3375 -3.5465 -0.9172 12 6 10.4684 -4.3048 -0.9235 13 6 10.6205 -5.3493 0.0116 14 6 11.7923 -6.1330 0.0116 15 1 12.1503 -6.5690 0.9325 16 6 12.4918 -6.3461 -1.1821 17 7 13.7351 -6.7511 -1.1482 18 14 11.6497 -6.0522 -2.8234 19 1 11.9685 -4.6842 -3.3054 20 1 12.1308 -7.0501 -3.8124 21 1 10.1804 -6.1887 -2.6574 22 6 9.5978 -5.6078 0.9455 23 6 8.4657 -4.8463 0.9413 24 9 7.4839 -5.0921 1.8363 25 6 5.8376 -3.6044 0.0005 26 6 4.7028 -2.8443 0.0043 27 8 2.3003 -1.0849 0.0005 28 1 -0.3633 0.0009 1.0277 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3634 -0.8904 -0.5131 31 1 6.1217 0.2455 0.0028 32 1 8.1541 -1.1151 0.0054 33 1 9.2232 -2.7435 -1.6303 34 1 11.2502 -4.1036 -1.6410 35 1 14.2197 -6.8991 -1.9753 36 1 9.7101 -6.4065 1.6638 37 1 5.7659 -4.6819 -0.0028 38 1 3.7337 -3.3210 0.0036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239019607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:47 Heat of formation + Delta-G solvation = 27.824793 kcal Electronic energy + Delta-G solvation = -25042.062389 eV Core-core repulsion = 21151.171321 eV Total energy + Delta-G solvation = -3890.891067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.09915 -44.20653 -39.27712 -37.68881 -36.26209 -34.24881 -33.44515 -32.00687 -31.11883 -29.95982 -29.65994 -27.92875 -25.71457 -23.79964 -23.14440 -22.15933 -21.88884 -21.23352 -20.56457 -18.02899 -17.83791 -17.52796 -16.66757 -16.19425 -15.58460 -15.39090 -15.24607 -15.03216 -14.76200 -14.28849 -14.05121 -13.72029 -13.39527 -13.33980 -13.28729 -13.03723 -12.90009 -12.77668 -12.50286 -12.31116 -12.01023 -11.95893 -11.44294 -11.30059 -11.20938 -10.98637 -10.89326 -10.54124 -10.17089 -10.08092 -9.87280 -9.48525 -8.97567 -8.54019 -7.98206 -7.54398 -7.32220 -4.83804 0.41254 1.51319 1.56799 2.07070 2.14558 2.37521 2.50792 2.91099 3.03323 3.11363 3.66038 3.71965 3.86964 4.16485 4.20353 4.63900 4.89428 4.94443 4.99956 5.03882 5.11689 5.16186 5.22599 5.26247 5.32116 5.53080 5.53769 5.70078 5.77038 5.93469 6.11358 6.18725 6.36290 6.43677 6.44363 6.47656 6.75323 6.80344 6.93107 7.10955 7.20243 7.32904 7.52459 7.76962 7.98067 8.17430 8.26620 8.40388 9.67190 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029648 B = 0.002491 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.187447 B =11238.299248 C =11580.313646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.147 3.853 3 N -0.286 5.286 4 N -0.290 5.290 5 C 0.231 3.769 6 C -0.070 4.070 7 C -0.056 4.056 8 C -0.130 4.130 9 C 0.048 3.952 10 C -0.254 4.254 11 C -0.023 4.023 12 C -0.248 4.248 13 C 0.114 3.886 14 C -0.418 4.418 15 H 0.098 0.902 16 C 0.081 3.919 17 N -0.782 5.782 18 Si 0.916 3.084 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.240 1.240 22 C -0.251 4.251 23 C 0.158 3.842 24 F -0.157 7.157 25 C -0.125 4.125 26 C -0.072 4.072 27 O -0.223 6.223 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.293 0.707 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.051 6.858 -1.075 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.064 4.064 3 N -0.134 5.134 4 N -0.137 5.137 5 C 0.025 3.975 6 C -0.072 4.072 7 C -0.075 4.075 8 C -0.148 4.148 9 C 0.047 3.953 10 C -0.256 4.256 11 C -0.042 4.042 12 C -0.267 4.267 13 C 0.110 3.890 14 C -0.444 4.444 15 H 0.116 0.884 16 C -0.142 4.142 17 N -0.403 5.403 18 Si 0.741 3.259 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.163 1.163 22 C -0.271 4.271 23 C 0.139 3.861 24 F -0.136 7.136 25 C -0.143 4.143 26 C -0.092 4.092 27 O -0.104 6.104 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.147 0.853 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.461 7.998 -1.112 18.335 hybrid contribution -0.637 -1.228 -0.513 1.475 sum -17.097 6.771 -1.624 18.461 Atomic orbital electron populations 1.20313 0.80289 1.05562 1.05107 1.27955 0.97729 0.79645 1.01024 1.74364 0.96281 1.25661 1.17061 1.74765 1.11633 1.08372 1.18924 1.25649 0.83347 0.90385 0.98152 1.17173 0.86395 0.91365 1.12251 1.20764 0.90062 1.00460 0.96204 1.21039 0.98358 0.92969 1.02424 1.19086 0.92672 0.92604 0.90889 1.17920 0.97482 1.03950 1.06209 1.20248 0.91610 0.96992 0.95320 1.20766 0.99522 1.00715 1.05720 1.17536 0.91121 0.90461 0.89855 1.19643 1.03197 1.24722 0.96838 0.88401 1.26358 0.93818 0.91531 1.02509 1.69662 1.08589 1.29976 1.32094 0.86217 0.82461 0.78274 0.78937 1.19069 1.21339 1.16291 1.20647 0.94380 1.04416 1.07619 1.17248 0.85848 0.95018 0.88036 1.91381 1.61810 1.93796 1.66570 1.21017 0.91201 1.00340 1.01780 1.20809 0.99191 0.91641 0.97569 1.84825 1.17343 1.37961 1.70223 0.88450 0.87651 0.88984 0.84814 0.84853 0.87533 0.87394 0.89655 0.86701 0.85278 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.15 1.67 8.47 -12.87 -0.11 1.56 16 3 N -0.29 -4.13 12.22 32.59 0.40 -3.73 16 4 N -0.29 -4.59 11.91 32.04 0.38 -4.21 16 5 C 0.23 3.41 7.98 -13.92 -0.11 3.30 16 6 C -0.07 -1.02 5.88 -104.89 -0.62 -1.63 16 7 C -0.06 -0.79 9.64 -39.59 -0.38 -1.17 16 8 C -0.13 -1.96 9.43 -39.58 -0.37 -2.33 16 9 C 0.05 0.82 5.31 -104.82 -0.56 0.26 16 10 C -0.25 -4.92 5.50 -104.57 -0.57 -5.50 16 11 C -0.02 -0.45 9.42 -39.65 -0.37 -0.83 16 12 C -0.25 -5.34 7.10 -39.28 -0.28 -5.61 16 13 C 0.11 2.62 5.10 -106.81 -0.55 2.08 16 14 C -0.42 -10.15 9.54 -37.89 -0.36 -10.51 16 15 H 0.10 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.08 1.90 5.40 -17.33 -0.09 1.81 16 17 N -0.78 -18.71 13.93 55.55 0.77 -17.94 16 18 Si 0.92 18.65 24.51 -169.99 -4.17 14.48 16 19 H -0.26 -5.19 6.70 56.52 0.38 -4.81 16 20 H -0.29 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.24 -5.03 6.87 56.52 0.39 -4.64 16 22 C -0.25 -5.47 9.70 -39.23 -0.38 -5.85 16 23 C 0.16 3.26 7.10 -39.48 -0.28 2.98 16 24 F -0.16 -3.09 15.87 2.25 0.04 -3.06 16 25 C -0.13 -1.95 8.80 -39.58 -0.35 -2.30 16 26 C -0.07 -1.01 9.67 -39.59 -0.38 -1.40 16 27 O -0.22 -2.93 10.66 3.97 0.04 -2.89 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.13 1.74 7.85 -52.49 -0.41 1.33 16 32 H 0.13 1.83 8.03 -52.49 -0.42 1.41 16 33 H 0.11 1.79 8.02 -52.49 -0.42 1.37 16 34 H 0.11 2.28 4.73 -52.49 -0.25 2.03 16 35 H 0.29 6.27 8.30 -40.82 -0.34 5.94 16 36 H 0.11 2.40 8.06 -52.48 -0.42 1.97 16 37 H 0.13 1.96 7.79 -52.49 -0.41 1.55 16 38 H 0.12 1.48 7.92 -52.49 -0.42 1.07 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -26.97 337.49 -6.45 -33.42 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -3.61 Total: 3.90 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -5.39 Total: -25.07 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 1.55 Total: -25.88 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.17 Total: 14.48 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.97 -6.45 -33.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239019607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.243 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds