Wall clock time and date at job start Tue Mar 31 2020 14:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30446 * 126.18081 * 2 1 4 4 N 1.28663 * 109.52953 * 179.73028 * 3 2 1 5 5 C 1.31351 * 109.22944 * 0.37687 * 4 3 2 6 6 C 1.47632 * 126.38135 * 179.88542 * 5 4 3 7 7 C 1.39809 * 120.00265 * 359.69546 * 6 5 4 8 8 C 1.36582 * 120.00519 * 179.97438 * 7 6 5 9 9 C 1.39829 * 119.99390 * 0.02562 * 8 7 6 10 10 C 1.47755 * 119.99999 * 179.97438 * 9 8 7 11 11 C 1.40046 * 119.90563 * 310.27232 * 10 9 8 12 12 C 1.36161 * 120.13383 * 180.27763 * 11 10 9 13 13 C 1.41014 * 119.93643 * 359.45186 * 12 11 10 14 14 C 1.40965 * 120.09752 * 180.25382 * 13 12 11 15 15 H 1.08000 * 120.00187 * 150.08841 * 14 13 12 16 16 C 1.39992 * 119.99836 * 330.09593 * 14 13 12 17 17 N 1.30799 * 119.99956 * 161.73636 * 16 14 13 18 18 Si 1.86797 * 119.99819 * 341.72589 * 16 14 13 19 19 H 1.48504 * 109.46952 * 95.42588 * 18 16 14 20 20 H 1.48505 * 109.47421 * 215.42111 * 18 16 14 21 21 H 1.48493 * 109.47647 * 335.42207 * 18 16 14 22 22 C 1.40892 * 119.81044 * 0.27883 * 13 12 11 23 23 C 1.36435 * 119.86341 * 359.97438 * 22 13 12 24 24 F 1.35102 * 119.96536 * 180.02562 * 23 22 13 25 25 C 1.39832 * 120.00022 * 0.25811 * 9 8 7 26 26 C 1.36583 * 119.99294 * 359.45722 * 25 9 8 27 27 O 1.34397 * 126.17410 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46904 * 270.04988 * 1 2 3 29 29 H 1.09003 * 109.46648 * 30.04726 * 1 2 3 30 30 H 1.08999 * 109.47283 * 150.04617 * 1 2 3 31 31 H 1.07999 * 119.99485 * 0.02562 * 7 6 5 32 32 H 1.07994 * 120.00121 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.93374 * 0.02562 * 11 10 9 34 34 H 1.08002 * 120.03335 * 179.72444 * 12 11 10 35 35 H 0.97002 * 120.00229 * 179.97438 * 17 16 14 36 36 H 1.08005 * 120.06891 * 180.02562 * 22 13 12 37 37 H 1.07998 * 120.00358 * 179.73076 * 25 9 8 38 38 H 1.07999 * 119.99580 * 180.25461 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2771 1.0529 0.0000 4 7 3.5098 0.6842 0.0057 5 6 3.5689 -0.6279 0.0014 6 6 4.7956 -1.4493 0.0031 7 6 6.0501 -0.8321 0.0034 8 6 7.1851 -1.5919 0.0055 9 6 7.0923 -2.9871 0.0068 10 6 8.3200 -3.8092 0.0085 11 6 9.3375 -3.5465 -0.9172 12 6 10.4684 -4.3048 -0.9235 13 6 10.6205 -5.3493 0.0116 14 6 11.7923 -6.1330 0.0116 15 1 12.1503 -6.5690 0.9325 16 6 12.4918 -6.3461 -1.1821 17 7 13.7351 -6.7511 -1.1482 18 14 11.6497 -6.0522 -2.8234 19 1 11.9685 -4.6842 -3.3054 20 1 12.1308 -7.0501 -3.8124 21 1 10.1804 -6.1887 -2.6574 22 6 9.5978 -5.6078 0.9455 23 6 8.4657 -4.8463 0.9413 24 9 7.4839 -5.0921 1.8363 25 6 5.8376 -3.6044 0.0005 26 6 4.7028 -2.8443 0.0043 27 8 2.3003 -1.0849 0.0005 28 1 -0.3633 0.0009 1.0277 29 1 -0.3633 0.8896 -0.5146 30 1 -0.3634 -0.8904 -0.5131 31 1 6.1217 0.2455 0.0028 32 1 8.1541 -1.1151 0.0054 33 1 9.2232 -2.7435 -1.6303 34 1 11.2502 -4.1036 -1.6410 35 1 14.2197 -6.8991 -1.9753 36 1 9.7101 -6.4065 1.6638 37 1 5.7659 -4.6819 -0.0028 38 1 3.7337 -3.3210 0.0036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239019607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:46 Heat of formation + Delta-G solvation = 11.324832 kcal Electronic energy + Delta-G solvation = -25042.777881 eV Core-core repulsion = 21151.171321 eV Total energy + Delta-G solvation = -3891.606559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.72320 -45.22005 -40.55911 -39.26056 -37.29441 -35.82815 -34.61286 -33.20638 -32.28565 -31.38633 -31.18244 -28.97811 -27.14484 -25.06066 -24.23658 -23.51446 -23.18373 -22.57976 -22.00681 -19.74992 -18.93369 -18.53260 -18.04453 -17.42349 -17.07498 -16.96557 -16.82401 -16.44007 -15.98673 -15.39437 -15.29553 -14.95441 -14.67616 -14.49368 -14.43077 -14.30508 -14.04315 -13.77054 -13.66135 -13.52667 -13.50547 -13.04776 -12.93477 -12.84902 -12.67036 -12.38719 -12.07022 -11.98861 -11.74330 -11.55147 -11.28574 -11.03388 -10.11526 -9.92636 -9.58085 -9.06449 -9.03656 -6.62910 -0.71009 0.32476 0.41317 0.68575 0.74001 1.12815 1.27234 1.35168 1.43775 1.50321 2.07978 2.39673 2.74295 2.75624 3.29705 3.32740 3.56997 3.72339 3.82109 3.90588 4.01748 4.18112 4.19191 4.34198 4.35694 4.49323 4.56208 4.57459 4.67902 4.71610 4.77169 4.82051 5.02383 5.04909 5.11329 5.20896 5.30104 5.43123 5.44519 5.52997 5.73387 5.77361 5.85155 6.06313 6.22984 6.54574 6.64408 7.15000 8.02408 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029648 B = 0.002491 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.187447 B =11238.299248 C =11580.313646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.169 3.831 3 N -0.325 5.325 4 N -0.309 5.309 5 C 0.216 3.784 6 C -0.062 4.062 7 C -0.057 4.057 8 C -0.120 4.120 9 C 0.017 3.983 10 C -0.228 4.228 11 C -0.023 4.023 12 C -0.255 4.255 13 C 0.103 3.897 14 C -0.461 4.461 15 H 0.065 0.935 16 C 0.051 3.949 17 N -0.824 5.824 18 Si 0.964 3.036 19 H -0.248 1.248 20 H -0.276 1.276 21 H -0.250 1.250 22 C -0.265 4.265 23 C 0.149 3.851 24 F -0.152 7.152 25 C -0.124 4.124 26 C -0.068 4.068 27 O -0.225 6.225 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.301 0.699 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.846 8.891 -2.237 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.041 4.041 3 N -0.171 5.171 4 N -0.155 5.155 5 C 0.008 3.992 6 C -0.064 4.064 7 C -0.076 4.076 8 C -0.138 4.138 9 C 0.016 3.984 10 C -0.230 4.230 11 C -0.041 4.041 12 C -0.274 4.274 13 C 0.100 3.900 14 C -0.488 4.488 15 H 0.083 0.917 16 C -0.168 4.168 17 N -0.448 5.448 18 Si 0.786 3.214 19 H -0.173 1.173 20 H -0.202 1.202 21 H -0.173 1.173 22 C -0.285 4.285 23 C 0.130 3.870 24 F -0.130 7.130 25 C -0.143 4.143 26 C -0.087 4.087 27 O -0.106 6.106 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.148 0.852 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.264 10.052 -2.263 22.733 hybrid contribution 0.060 -1.629 -0.017 1.630 sum -20.204 8.423 -2.280 22.008 Atomic orbital electron populations 1.20764 0.76058 1.07501 1.07083 1.29183 0.99455 0.78460 0.97048 1.74333 0.96189 1.26958 1.19647 1.74690 1.12816 1.09002 1.19039 1.25590 0.83978 0.90237 0.99383 1.17353 0.86661 0.91689 1.10663 1.20888 0.89747 1.01066 0.95880 1.21128 0.99327 0.92106 1.01232 1.19050 0.92027 0.93234 0.94051 1.18255 0.98102 1.02481 1.04184 1.20605 0.90652 0.97233 0.95605 1.20903 1.00576 1.00427 1.05463 1.17646 0.90834 0.90777 0.90721 1.19538 1.05267 1.27564 0.96460 0.91716 1.26957 0.94061 0.91069 1.04709 1.69680 1.09615 1.32294 1.33212 0.85501 0.80765 0.79262 0.75880 1.17252 1.20244 1.17309 1.20743 0.94949 1.05024 1.07783 1.17336 0.85583 0.95533 0.88567 1.91388 1.61377 1.93815 1.66449 1.21059 0.91198 1.00603 1.01390 1.20958 0.99699 0.91342 0.96712 1.84846 1.16931 1.38513 1.70288 0.86167 0.86023 0.86650 0.83647 0.83503 0.84096 0.86962 0.88824 0.87050 0.85183 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.17 3.31 8.47 88.32 0.75 4.06 16 3 N -0.32 -8.66 12.22 -165.28 -2.02 -10.68 16 4 N -0.31 -9.17 11.91 -166.31 -1.98 -11.15 16 5 C 0.22 5.83 7.98 87.25 0.70 6.53 16 6 C -0.06 -1.62 5.88 -20.04 -0.12 -1.74 16 7 C -0.06 -1.45 9.64 22.26 0.21 -1.24 16 8 C -0.12 -3.26 9.43 22.27 0.21 -3.05 16 9 C 0.02 0.54 5.31 -19.99 -0.11 0.43 16 10 C -0.23 -8.43 5.50 -19.83 -0.11 -8.54 16 11 C -0.02 -0.84 9.42 22.22 0.21 -0.63 16 12 C -0.25 -10.77 7.10 22.47 0.16 -10.61 16 13 C 0.10 4.89 5.10 -21.28 -0.11 4.79 16 14 C -0.46 -23.81 9.54 23.36 0.22 -23.58 16 15 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 16 C 0.05 2.47 5.40 85.27 0.46 2.93 16 17 N -0.82 -41.34 13.93 21.83 0.30 -41.04 16 18 Si 0.96 38.39 24.51 68.60 1.68 40.07 16 19 H -0.25 -9.10 6.70 99.48 0.67 -8.43 16 20 H -0.28 -10.40 7.11 99.48 0.71 -9.70 16 21 H -0.25 -10.20 6.87 99.48 0.68 -9.52 16 22 C -0.26 -11.87 9.70 22.50 0.22 -11.65 16 23 C 0.15 6.07 7.10 22.34 0.16 6.23 16 24 F -0.15 -5.85 15.87 44.97 0.71 -5.14 16 25 C -0.12 -3.55 8.80 22.27 0.20 -3.35 16 26 C -0.07 -1.68 9.67 22.26 0.22 -1.47 16 27 O -0.23 -5.21 10.66 -8.71 -0.09 -5.31 16 28 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.15 3.40 7.85 -2.91 -0.02 3.38 16 32 H 0.15 3.55 8.03 -2.91 -0.02 3.52 16 33 H 0.14 4.20 8.02 -2.91 -0.02 4.17 16 34 H 0.11 4.62 4.73 -2.91 -0.01 4.61 16 35 H 0.30 13.39 8.30 -92.71 -0.77 12.62 16 36 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 37 H 0.13 3.66 7.79 -2.91 -0.02 3.64 16 38 H 0.15 2.97 7.92 -2.91 -0.02 2.95 16 Total: -1.00 -60.68 337.49 3.68 -57.00 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.05 Total: 16.77 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 4.02 Total: -40.52 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -3.70 Total: -62.87 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.09 Total: -5.31 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.71 Total: -5.14 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.68 Total: 40.07 kcal Total: -60.68 3.68 -57.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239019607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.325 kcal (2) G-P(sol) polarization free energy of solvation -60.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds