Wall clock time and date at job start Tue Mar 31 2020 14:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30452 * 126.17798 * 2 1 4 4 N 1.28668 * 109.52744 * 179.74368 * 3 2 1 5 5 C 1.31347 * 109.23074 * 0.38809 * 4 3 2 6 6 C 1.47623 * 126.38635 * 179.88491 * 5 4 3 7 7 C 1.39820 * 119.99535 * 359.68886 * 6 5 4 8 8 C 1.36561 * 120.00734 * 179.97438 * 7 6 5 9 9 C 1.39870 * 119.99852 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00919 * 180.02562 * 9 8 7 11 11 C 1.39276 * 120.26359 * 310.24918 * 10 9 8 12 12 C 1.37920 * 120.12567 * 180.29192 * 11 10 9 13 13 C 1.39236 * 120.66909 * 359.45515 * 12 11 10 14 14 F 1.35105 * 119.74017 * 180.25266 * 13 12 11 15 15 C 1.37604 * 120.52445 * 0.27463 * 13 12 11 16 16 C 1.40738 * 119.85053 * 359.97438 * 15 13 12 17 17 C 1.40806 * 120.32330 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99915 * 153.96104 * 17 16 15 19 19 C 1.40057 * 120.00060 * 333.96855 * 17 16 15 20 20 N 1.30785 * 119.99897 * 344.21785 * 19 17 16 21 21 Si 1.86801 * 120.00288 * 164.22444 * 19 17 16 22 22 H 1.48497 * 109.47332 * 94.95783 * 21 19 17 23 23 H 1.48499 * 109.47318 * 214.95949 * 21 19 17 24 24 H 1.48501 * 109.46980 * 334.95835 * 21 19 17 25 25 C 1.39876 * 119.98279 * 0.27504 * 9 8 7 26 26 C 1.36569 * 119.99369 * 359.44699 * 25 9 8 27 27 O 1.34389 * 126.17920 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47056 * 270.02793 * 1 2 3 29 29 H 1.09004 * 109.46587 * 30.02334 * 1 2 3 30 30 H 1.08998 * 109.47262 * 150.02108 * 1 2 3 31 31 H 1.08005 * 119.99437 * 359.97438 * 7 6 5 32 32 H 1.08008 * 120.00503 * 179.97438 * 8 7 6 33 33 H 1.08008 * 119.93471 * 0.04515 * 11 10 9 34 34 H 1.08004 * 119.66427 * 179.72866 * 12 11 10 35 35 H 1.07998 * 120.07596 * 179.97438 * 15 13 12 36 36 H 0.96994 * 119.99763 * 180.02562 * 20 19 17 37 37 H 1.07997 * 119.99976 * 179.69937 * 25 9 8 38 38 H 1.08001 * 119.99539 * 180.27456 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2771 1.0530 0.0000 4 7 3.5098 0.6843 0.0054 5 6 3.5689 -0.6278 0.0007 6 6 4.7956 -1.4491 0.0020 7 6 6.0501 -0.8318 0.0022 8 6 7.1850 -1.5914 0.0039 9 6 7.0925 -2.9870 0.0049 10 6 8.3193 -3.8084 0.0073 11 6 9.3363 -3.5538 -0.9096 12 6 10.4785 -4.3268 -0.9088 13 6 10.6361 -5.3602 0.0110 14 9 11.7650 -6.1023 -0.0017 15 6 9.6510 -5.6319 0.9325 16 6 8.4741 -4.8603 0.9479 17 6 7.4594 -5.1299 1.8862 18 1 6.7852 -4.3441 2.1932 19 6 7.3247 -6.4172 2.4214 20 7 7.9163 -7.4306 1.8440 21 14 6.2998 -6.6866 3.9597 22 1 4.9228 -7.0864 3.5734 23 1 6.9143 -7.7594 4.7823 24 1 6.2475 -5.4282 4.7463 25 6 5.8373 -3.6043 -0.0017 26 6 4.7027 -2.8443 0.0024 27 8 2.3003 -1.0848 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 6.1216 0.2458 0.0010 32 1 8.1541 -1.1145 0.0036 33 1 9.2284 -2.7521 -1.6253 34 1 11.2606 -4.1256 -1.6260 35 1 9.7806 -6.4354 1.6423 36 1 7.8227 -8.3221 2.2145 37 1 5.7655 -4.6819 -0.0058 38 1 3.7335 -3.3209 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239020817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:16 Heat of formation + Delta-G solvation = 24.841315 kcal Electronic energy + Delta-G solvation = -25422.444562 eV Core-core repulsion = 21531.424121 eV Total energy + Delta-G solvation = -3891.020441 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -47.79904 -44.04320 -39.15243 -37.25687 -36.09920 -34.01501 -33.41609 -31.66248 -30.88974 -29.92807 -28.95119 -27.20562 -25.76573 -23.93310 -23.00996 -21.95952 -21.70910 -21.05879 -20.05760 -17.86991 -17.53082 -17.36731 -16.24959 -16.11063 -15.61885 -15.17374 -14.97972 -14.71731 -14.46280 -14.08845 -13.81634 -13.59482 -13.29304 -13.13786 -13.07653 -12.86518 -12.70993 -12.36882 -12.24415 -11.99737 -11.81716 -11.79705 -11.33312 -11.24931 -10.98188 -10.87766 -10.66063 -10.53194 -10.13945 -10.01512 -9.70772 -9.46494 -8.68006 -8.23125 -7.80733 -7.32026 -7.03080 -4.71250 0.62854 1.71838 1.86737 2.24147 2.37331 2.55303 2.77979 2.91808 2.94398 3.00514 3.69637 3.82831 4.17088 4.30599 4.37048 4.80107 5.00545 5.13651 5.21405 5.25096 5.35376 5.41479 5.43250 5.50335 5.59017 5.67782 5.83262 6.00303 6.02284 6.18444 6.27167 6.44206 6.66779 6.70107 6.72341 6.80703 6.91178 7.10996 7.26150 7.27632 7.46956 7.56535 7.68136 7.92527 8.25449 8.33181 8.49538 8.54605 9.82263 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003496 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.049443 B = 8008.256467 C = 9687.148687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.143 3.857 3 N -0.287 5.287 4 N -0.295 5.295 5 C 0.236 3.764 6 C -0.076 4.076 7 C -0.059 4.059 8 C -0.139 4.139 9 C 0.061 3.939 10 C -0.208 4.208 11 C -0.038 4.038 12 C -0.277 4.277 13 C 0.112 3.888 14 F -0.165 7.165 15 C -0.195 4.195 16 C 0.150 3.850 17 C -0.440 4.440 18 H 0.090 0.910 19 C 0.076 3.924 20 N -0.775 5.775 21 Si 0.908 3.092 22 H -0.266 1.266 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.106 4.106 26 C -0.080 4.080 27 O -0.223 6.223 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.132 0.868 36 H 0.288 0.712 37 H 0.140 0.860 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 6.143 -1.716 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 N -0.135 5.135 4 N -0.142 5.142 5 C 0.030 3.970 6 C -0.078 4.078 7 C -0.078 4.078 8 C -0.157 4.157 9 C 0.061 3.939 10 C -0.210 4.210 11 C -0.056 4.056 12 C -0.297 4.297 13 C 0.093 3.907 14 F -0.144 7.144 15 C -0.215 4.215 16 C 0.147 3.853 17 C -0.468 4.468 18 H 0.108 0.892 19 C -0.145 4.145 20 N -0.398 5.398 21 Si 0.731 3.269 22 H -0.191 1.191 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.124 4.124 26 C -0.100 4.100 27 O -0.104 6.104 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.150 0.850 36 H 0.099 0.901 37 H 0.158 0.842 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.612 7.112 -1.696 12.076 hybrid contribution -0.606 -1.648 0.664 1.877 sum -10.217 5.464 -1.032 11.632 Atomic orbital electron populations 1.20286 0.80449 1.05439 1.05004 1.27899 0.97683 0.79746 1.01458 1.74341 0.96369 1.25728 1.17030 1.74753 1.11514 1.08470 1.19469 1.25732 0.83360 0.90334 0.97549 1.17171 0.86199 0.91432 1.12976 1.20681 0.90159 1.00134 0.96821 1.21032 0.98022 0.93268 1.03365 1.19096 0.93240 0.91978 0.89632 1.18583 0.94865 1.04745 1.02793 1.20410 0.91912 0.96752 0.96555 1.20210 1.01306 1.02612 1.05580 1.17803 0.82727 0.91857 0.98346 1.91350 1.50611 1.76205 1.96279 1.21277 0.93204 1.05227 1.01771 1.17238 0.90941 0.87890 0.89254 1.19665 1.12476 0.95584 1.19031 0.89201 1.26038 0.95325 0.95636 0.97549 1.69772 1.33737 1.00796 1.35481 0.86265 0.79969 0.79600 0.81025 1.19125 1.19686 1.18015 1.21158 0.90771 1.01140 0.99368 1.20840 0.99333 0.91511 0.98319 1.84829 1.17409 1.37893 1.70228 0.88566 0.87774 0.89053 0.85235 0.85342 0.87883 0.87891 0.85029 0.90118 0.84199 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.14 1.82 8.47 -12.86 -0.11 1.71 16 3 N -0.29 -4.49 12.22 32.59 0.40 -4.09 16 4 N -0.30 -5.06 11.91 32.04 0.38 -4.68 16 5 C 0.24 3.86 7.98 -13.93 -0.11 3.74 16 6 C -0.08 -1.23 5.88 -104.88 -0.62 -1.85 16 7 C -0.06 -0.92 9.64 -39.60 -0.38 -1.31 16 8 C -0.14 -2.30 9.45 -39.58 -0.37 -2.67 16 9 C 0.06 1.15 4.92 -104.84 -0.52 0.64 16 10 C -0.21 -4.41 5.52 -104.25 -0.58 -4.99 16 11 C -0.04 -0.76 9.48 -39.31 -0.37 -1.13 16 12 C -0.28 -5.80 10.00 -39.33 -0.39 -6.19 16 13 C 0.11 2.57 7.28 -39.44 -0.29 2.28 16 14 F -0.17 -3.71 17.26 2.25 0.04 -3.67 16 15 C -0.19 -4.70 8.64 -38.87 -0.34 -5.04 16 16 C 0.15 3.52 5.56 -106.56 -0.59 2.93 16 17 C -0.44 -10.10 7.13 -37.93 -0.27 -10.37 16 18 H 0.09 2.02 6.60 -52.48 -0.35 1.67 16 19 C 0.08 1.68 5.17 -17.32 -0.09 1.59 16 20 N -0.77 -17.93 10.93 55.55 0.61 -17.32 16 21 Si 0.91 16.88 29.59 -169.99 -5.03 11.85 16 22 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 25 C -0.11 -1.91 7.92 -39.57 -0.31 -2.23 16 26 C -0.08 -1.30 9.66 -39.59 -0.38 -1.68 16 27 O -0.22 -3.28 10.65 3.98 0.04 -3.24 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.87 7.85 -52.48 -0.41 1.46 16 32 H 0.13 1.93 8.03 -52.48 -0.42 1.51 16 33 H 0.10 1.77 8.03 -52.48 -0.42 1.35 16 34 H 0.10 1.94 8.06 -52.48 -0.42 1.51 16 35 H 0.13 3.31 6.20 -52.49 -0.33 2.98 16 36 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 37 H 0.14 2.64 7.32 -52.49 -0.38 2.25 16 38 H 0.12 1.73 7.92 -52.49 -0.42 1.32 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -26.76 339.82 -7.33 -34.10 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -3.55 Total: 6.48 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -5.34 Total: -24.55 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 1.39 Total: -26.09 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.04 Total: -3.67 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.76 -7.33 -34.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239020817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.939 kcal (2) G-P(sol) polarization free energy of solvation -26.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds