Wall clock time and date at job start Tue Mar 31 2020 14:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30452 * 126.17798 * 2 1 4 4 N 1.28668 * 109.52744 * 179.74368 * 3 2 1 5 5 C 1.31347 * 109.23074 * 0.38809 * 4 3 2 6 6 C 1.47623 * 126.38635 * 179.88491 * 5 4 3 7 7 C 1.39820 * 119.99535 * 359.68886 * 6 5 4 8 8 C 1.36561 * 120.00734 * 179.97438 * 7 6 5 9 9 C 1.39870 * 119.99852 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00919 * 180.02562 * 9 8 7 11 11 C 1.39276 * 120.26359 * 310.24918 * 10 9 8 12 12 C 1.37920 * 120.12567 * 180.29192 * 11 10 9 13 13 C 1.39236 * 120.66909 * 359.45515 * 12 11 10 14 14 F 1.35105 * 119.74017 * 180.25266 * 13 12 11 15 15 C 1.37604 * 120.52445 * 0.27463 * 13 12 11 16 16 C 1.40738 * 119.85053 * 359.97438 * 15 13 12 17 17 C 1.40806 * 120.32330 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99915 * 153.96104 * 17 16 15 19 19 C 1.40057 * 120.00060 * 333.96855 * 17 16 15 20 20 N 1.30785 * 119.99897 * 344.21785 * 19 17 16 21 21 Si 1.86801 * 120.00288 * 164.22444 * 19 17 16 22 22 H 1.48497 * 109.47332 * 94.95783 * 21 19 17 23 23 H 1.48499 * 109.47318 * 214.95949 * 21 19 17 24 24 H 1.48501 * 109.46980 * 334.95835 * 21 19 17 25 25 C 1.39876 * 119.98279 * 0.27504 * 9 8 7 26 26 C 1.36569 * 119.99369 * 359.44699 * 25 9 8 27 27 O 1.34389 * 126.17920 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47056 * 270.02793 * 1 2 3 29 29 H 1.09004 * 109.46587 * 30.02334 * 1 2 3 30 30 H 1.08998 * 109.47262 * 150.02108 * 1 2 3 31 31 H 1.08005 * 119.99437 * 359.97438 * 7 6 5 32 32 H 1.08008 * 120.00503 * 179.97438 * 8 7 6 33 33 H 1.08008 * 119.93471 * 0.04515 * 11 10 9 34 34 H 1.08004 * 119.66427 * 179.72866 * 12 11 10 35 35 H 1.07998 * 120.07596 * 179.97438 * 15 13 12 36 36 H 0.96994 * 119.99763 * 180.02562 * 20 19 17 37 37 H 1.07997 * 119.99976 * 179.69937 * 25 9 8 38 38 H 1.08001 * 119.99539 * 180.27456 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2771 1.0530 0.0000 4 7 3.5098 0.6843 0.0054 5 6 3.5689 -0.6278 0.0007 6 6 4.7956 -1.4491 0.0020 7 6 6.0501 -0.8318 0.0022 8 6 7.1850 -1.5914 0.0039 9 6 7.0925 -2.9870 0.0049 10 6 8.3193 -3.8084 0.0073 11 6 9.3363 -3.5538 -0.9096 12 6 10.4785 -4.3268 -0.9088 13 6 10.6361 -5.3602 0.0110 14 9 11.7650 -6.1023 -0.0017 15 6 9.6510 -5.6319 0.9325 16 6 8.4741 -4.8603 0.9479 17 6 7.4594 -5.1299 1.8862 18 1 6.7852 -4.3441 2.1932 19 6 7.3247 -6.4172 2.4214 20 7 7.9163 -7.4306 1.8440 21 14 6.2998 -6.6866 3.9597 22 1 4.9228 -7.0864 3.5734 23 1 6.9143 -7.7594 4.7823 24 1 6.2475 -5.4282 4.7463 25 6 5.8373 -3.6043 -0.0017 26 6 4.7027 -2.8443 0.0024 27 8 2.3003 -1.0848 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 6.1216 0.2458 0.0010 32 1 8.1541 -1.1145 0.0036 33 1 9.2284 -2.7521 -1.6253 34 1 11.2606 -4.1256 -1.6260 35 1 9.7806 -6.4354 1.6423 36 1 7.8227 -8.3221 2.2145 37 1 5.7655 -4.6819 -0.0058 38 1 3.7335 -3.3209 0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239020817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:15 Heat of formation + Delta-G solvation = 9.845716 kcal Electronic energy + Delta-G solvation = -25423.094820 eV Core-core repulsion = 21531.424121 eV Total energy + Delta-G solvation = -3891.670699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.57872 -45.17745 -40.56930 -38.83131 -37.25240 -35.67956 -34.56602 -32.86561 -32.25823 -31.54448 -30.25495 -28.44562 -27.39455 -25.25882 -24.20542 -23.32839 -23.12143 -22.49482 -21.59015 -19.53611 -18.77766 -18.49169 -17.83215 -17.51323 -16.99457 -16.77128 -16.49730 -16.24235 -15.94698 -15.28735 -15.20262 -14.81595 -14.51056 -14.40516 -14.35511 -14.05882 -13.83374 -13.60393 -13.45971 -13.43236 -13.39627 -12.99264 -12.87527 -12.80060 -12.45522 -12.21455 -12.11556 -11.93560 -11.71508 -11.54971 -11.11716 -11.02093 -9.98522 -9.65675 -9.51740 -8.93861 -8.66632 -6.44329 -0.60983 0.45286 0.55088 0.84866 0.95796 1.18278 1.38049 1.44400 1.45825 1.51953 2.14808 2.58850 2.80054 2.86729 3.36599 3.53587 3.78178 3.81908 4.00628 4.04755 4.12287 4.26218 4.39580 4.43099 4.51811 4.56213 4.58199 4.68502 4.73204 4.89554 4.99552 5.03994 5.06332 5.13947 5.25363 5.35730 5.42516 5.59955 5.68114 5.75672 5.79779 5.98182 6.03696 6.22896 6.53388 6.79297 6.83547 7.18727 8.19646 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003496 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.049443 B = 8008.256467 C = 9687.148687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.165 3.835 3 N -0.323 5.323 4 N -0.311 5.311 5 C 0.220 3.780 6 C -0.068 4.068 7 C -0.057 4.057 8 C -0.128 4.128 9 C 0.036 3.964 10 C -0.204 4.204 11 C -0.038 4.038 12 C -0.277 4.277 13 C 0.096 3.904 14 F -0.168 7.168 15 C -0.223 4.223 16 C 0.126 3.874 17 C -0.459 4.459 18 H 0.089 0.911 19 C 0.042 3.958 20 N -0.809 5.809 21 Si 0.970 3.030 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.111 4.111 26 C -0.076 4.076 27 O -0.227 6.227 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.292 0.708 37 H 0.124 0.876 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.398 7.860 -2.038 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.045 4.045 3 N -0.170 5.170 4 N -0.157 5.157 5 C 0.013 3.987 6 C -0.071 4.071 7 C -0.076 4.076 8 C -0.146 4.146 9 C 0.035 3.965 10 C -0.206 4.206 11 C -0.056 4.056 12 C -0.296 4.296 13 C 0.077 3.923 14 F -0.147 7.147 15 C -0.243 4.243 16 C 0.123 3.877 17 C -0.487 4.487 18 H 0.107 0.893 19 C -0.176 4.176 20 N -0.434 5.434 21 Si 0.791 3.209 22 H -0.182 1.182 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.129 4.129 26 C -0.095 4.095 27 O -0.108 6.108 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.002 8.847 -2.030 15.048 hybrid contribution -0.035 -2.022 0.674 2.132 sum -12.036 6.825 -1.356 13.903 Atomic orbital electron populations 1.20746 0.76104 1.07451 1.07012 1.29164 0.99460 0.78502 0.97413 1.74311 0.96203 1.26917 1.19566 1.74679 1.12738 1.08897 1.19425 1.25618 0.83908 0.90222 0.98986 1.17305 0.86703 0.91480 1.11564 1.20831 0.89722 1.00833 0.96235 1.21131 0.99130 0.92182 1.02159 1.19067 0.92505 0.92807 0.92130 1.18890 0.96001 1.03868 1.01811 1.20775 0.91051 0.97178 0.96568 1.20517 1.02317 1.01638 1.05158 1.18043 0.82606 0.92703 0.98985 1.91331 1.50562 1.76423 1.96344 1.21208 0.94504 1.05921 1.02679 1.17542 0.90945 0.88943 0.90299 1.19762 1.12864 0.96077 1.19990 0.89285 1.26739 0.96089 0.95087 0.99677 1.69831 1.35276 1.01327 1.36917 0.85339 0.78779 0.79212 0.77565 1.18226 1.19324 1.18255 1.21028 0.91326 1.00517 1.00047 1.20924 0.99481 0.91490 0.97635 1.84851 1.17053 1.38594 1.70303 0.86268 0.85941 0.86779 0.83739 0.83676 0.84509 0.85498 0.87117 0.89657 0.85827 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 71.24 0.75 0.24 16 2 C 0.16 3.73 8.47 88.31 0.75 4.48 16 3 N -0.32 -9.49 12.22 -165.29 -2.02 -11.51 16 4 N -0.31 -10.17 11.91 -166.32 -1.98 -12.15 16 5 C 0.22 6.79 7.98 87.25 0.70 7.48 16 6 C -0.07 -2.12 5.88 -20.03 -0.12 -2.23 16 7 C -0.06 -1.69 9.64 22.26 0.21 -1.47 16 8 C -0.13 -4.02 9.45 22.27 0.21 -3.81 16 9 C 0.04 1.32 4.92 -20.00 -0.10 1.22 16 10 C -0.20 -8.66 5.52 -19.62 -0.11 -8.77 16 11 C -0.04 -1.46 9.48 22.44 0.21 -1.25 16 12 C -0.28 -11.38 10.00 22.43 0.22 -11.15 16 13 C 0.10 4.49 7.28 22.36 0.16 4.65 16 14 F -0.17 -7.68 17.26 44.97 0.78 -6.91 16 15 C -0.22 -11.25 8.64 22.73 0.20 -11.05 16 16 C 0.13 6.09 5.56 -21.12 -0.12 5.98 16 17 C -0.46 -21.77 7.13 23.34 0.17 -21.60 16 18 H 0.09 4.10 6.60 -2.91 -0.02 4.08 16 19 C 0.04 1.91 5.17 85.29 0.44 2.35 16 20 N -0.81 -39.05 10.93 21.85 0.24 -38.81 16 21 Si 0.97 35.06 29.59 68.60 2.03 37.09 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 23 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 24 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 25 C -0.11 -3.97 7.92 22.28 0.18 -3.79 16 26 C -0.08 -2.35 9.66 22.26 0.22 -2.13 16 27 O -0.23 -6.14 10.65 -8.67 -0.09 -6.23 16 28 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.14 3.86 7.85 -2.91 -0.02 3.84 16 32 H 0.15 4.01 8.03 -2.91 -0.02 3.99 16 33 H 0.14 4.32 8.03 -2.91 -0.02 4.30 16 34 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.11 5.94 6.20 -2.91 -0.02 5.92 16 36 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 37 H 0.12 4.79 7.32 -2.91 -0.02 4.77 16 38 H 0.14 3.75 7.92 -2.91 -0.02 3.73 16 Total: -1.00 -59.85 339.82 4.04 -55.81 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 1.12 Total: 23.57 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 3.97 Total: -40.86 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -3.76 Total: -62.47 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.09 Total: -6.23 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 0.78 Total: -6.91 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.09 kcal Total: -59.85 4.04 -55.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239020817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.656 kcal (2) G-P(sol) polarization free energy of solvation -59.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds