Wall clock time and date at job start Tue Mar 31 2020 14:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30388 * 126.18591 * 2 1 4 4 N 1.28662 * 109.53583 * 179.70878 * 3 2 1 5 5 C 1.31289 * 109.24028 * 0.44942 * 4 3 2 6 6 C 1.47741 * 126.38785 * 179.82508 * 5 4 3 7 7 C 1.39676 * 120.02510 * 179.97438 * 6 5 4 8 8 C 1.37684 * 119.97412 * 180.22994 * 7 6 5 9 9 C 1.39477 * 120.02181 * 359.50351 * 8 7 6 10 10 C 1.48313 * 119.97314 * 180.24800 * 9 8 7 11 11 C 1.39750 * 119.99253 * 359.73050 * 10 9 8 12 12 C 1.38611 * 120.34130 * 179.71861 * 11 10 9 13 13 F 1.35108 * 119.82956 * 180.29376 * 12 11 10 14 14 C 1.37944 * 120.33873 * 0.55266 * 12 11 10 15 15 C 1.40724 * 119.97253 * 359.72216 * 14 12 11 16 16 C 1.41433 * 120.16743 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99566 * 154.76145 * 16 15 14 18 18 C 1.39927 * 120.00106 * 334.76227 * 16 15 14 19 19 N 1.30824 * 119.99939 * 342.77773 * 18 16 15 20 20 Si 1.86801 * 119.99623 * 162.78134 * 18 16 15 21 21 H 1.48500 * 109.47321 * 90.00250 * 20 18 16 22 22 H 1.48503 * 109.46821 * 209.99847 * 20 18 16 23 23 H 1.48496 * 109.47224 * 329.99477 * 20 18 16 24 24 C 1.38799 * 119.99502 * 179.97438 * 10 9 8 25 25 C 1.39481 * 120.05002 * 0.26991 * 9 8 7 26 26 C 1.37683 * 120.02280 * 359.97438 * 25 9 8 27 27 O 1.34420 * 126.17896 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46851 * 270.02414 * 1 2 3 29 29 H 1.09005 * 109.46706 * 30.01718 * 1 2 3 30 30 H 1.08988 * 109.47003 * 150.02236 * 1 2 3 31 31 H 1.07993 * 120.01218 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.98642 * 179.77360 * 8 7 6 33 33 H 1.07997 * 119.82562 * 359.97008 * 11 10 9 34 34 H 1.07998 * 120.01372 * 179.74156 * 14 12 11 35 35 H 0.97007 * 120.00088 * 180.02562 * 19 18 16 36 36 H 1.08010 * 120.15858 * 0.02799 * 24 10 9 37 37 H 1.07998 * 119.98766 * 180.02562 * 25 9 8 38 38 H 1.08001 * 120.01083 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0524 0.0000 4 7 3.5095 0.6837 0.0062 5 6 3.5689 -0.6278 0.0006 6 6 4.7967 -1.4496 0.0011 7 6 4.7048 -2.8433 -0.0048 8 6 5.8496 -3.6082 0.0004 9 6 7.1008 -2.9917 0.0011 10 6 8.3333 -3.8167 0.0012 11 6 8.2406 -5.2111 0.0062 12 6 9.3878 -5.9891 0.0005 13 9 9.2861 -7.3363 -0.0006 14 6 10.6327 -5.3949 0.0011 15 6 10.7420 -3.9919 0.0018 16 6 12.0164 -3.3783 0.0019 17 1 12.1357 -2.3816 -0.3965 18 6 13.1223 -4.0626 0.5181 19 7 12.9453 -5.1015 1.2933 20 14 14.8515 -3.4927 0.1003 21 1 15.3047 -2.5039 1.1114 22 1 15.7709 -4.6589 0.1019 23 1 14.8537 -2.8625 -1.2442 24 6 9.5786 -3.2036 0.0013 25 6 7.1937 -1.6000 0.0022 26 6 6.0501 -0.8332 0.0020 27 8 2.3005 -1.0850 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5134 31 1 3.7362 -3.3208 -0.0092 32 1 5.7788 -4.6859 -0.0004 33 1 7.2701 -5.6849 0.0106 34 1 11.5230 -6.0061 0.0008 35 1 13.7120 -5.5757 1.6515 36 1 9.6530 -2.1261 0.0018 37 1 8.1629 -1.1237 0.0023 38 1 6.1222 0.2444 0.0033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239022437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:50 Heat of formation + Delta-G solvation = 26.904464 kcal Electronic energy + Delta-G solvation = -24745.677244 eV Core-core repulsion = 20854.746268 eV Total energy + Delta-G solvation = -3890.930976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.78050 -44.24016 -39.37229 -37.32575 -36.28857 -34.28666 -33.35406 -31.75516 -31.18773 -29.80940 -29.03251 -27.36496 -25.69888 -24.34903 -23.25674 -22.21164 -22.14249 -20.50450 -20.38110 -18.03336 -17.61440 -17.55432 -16.46641 -16.02628 -15.42727 -15.28369 -14.98542 -14.75407 -14.50257 -14.44826 -14.10834 -13.74213 -13.56566 -13.46098 -13.12466 -12.98016 -12.95202 -12.53185 -12.21330 -12.01582 -11.80287 -11.62466 -11.51930 -11.23048 -11.18008 -11.03206 -10.68837 -10.59930 -10.18400 -10.06111 -9.83086 -9.38517 -8.95170 -8.67262 -7.66841 -7.25129 -6.97158 -4.64429 0.34689 1.44654 1.47872 2.03867 2.25632 2.50922 2.79372 2.97456 2.99140 3.05497 3.62464 3.77482 3.92665 4.17398 4.42086 4.61318 4.88444 4.91702 4.97745 5.00341 5.06961 5.24209 5.26393 5.35159 5.47038 5.51262 5.56954 5.68442 5.82652 6.00188 6.20105 6.33254 6.38221 6.46684 6.52175 6.71604 6.83931 6.95537 7.00214 7.29397 7.45645 7.54836 7.70354 7.97640 8.15170 8.32488 8.59394 8.61190 9.95643 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.002430 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.650807 B =11520.288769 C =12691.558969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.149 3.851 3 N -0.286 5.286 4 N -0.287 5.287 5 C 0.228 3.772 6 C -0.059 4.059 7 C -0.078 4.078 8 C -0.124 4.124 9 C 0.022 3.978 10 C -0.026 4.026 11 C -0.257 4.257 12 C 0.105 3.895 13 F -0.165 7.165 14 C -0.189 4.189 15 C 0.124 3.876 16 C -0.453 4.453 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.784 5.784 20 Si 0.912 3.088 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.201 4.201 25 C -0.121 4.121 26 C -0.059 4.059 27 O -0.223 6.223 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.285 0.715 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 4.774 -1.761 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.061 4.061 3 N -0.133 5.133 4 N -0.133 5.133 5 C 0.022 3.978 6 C -0.061 4.061 7 C -0.097 4.097 8 C -0.142 4.142 9 C 0.022 3.978 10 C -0.026 4.026 11 C -0.277 4.277 12 C 0.086 3.914 13 F -0.144 7.144 14 C -0.209 4.209 15 C 0.121 3.879 16 C -0.482 4.482 17 H 0.103 0.897 18 C -0.145 4.145 19 N -0.408 5.408 20 Si 0.736 3.264 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.220 4.220 25 C -0.138 4.138 26 C -0.078 4.078 27 O -0.103 6.103 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.124 0.876 34 H 0.149 0.851 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.159 0.841 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.350 5.821 -1.606 16.495 hybrid contribution 0.361 -1.344 0.004 1.392 sum -14.990 4.477 -1.601 15.726 Atomic orbital electron populations 1.20323 0.80237 1.05606 1.05145 1.27967 0.97747 0.79614 1.00789 1.74358 0.96246 1.25657 1.17081 1.74751 1.11666 1.08377 1.18549 1.25641 0.83364 0.90405 0.98436 1.17178 0.86431 0.91415 1.11076 1.21062 0.99157 0.91629 0.97892 1.21214 0.91012 1.00559 1.01378 1.19336 0.93148 0.92980 0.92370 1.18041 0.91044 0.91598 1.01904 1.20295 0.96000 0.92764 1.18661 1.17544 0.94985 0.75422 1.03420 1.91353 1.97270 1.31237 1.94534 1.21416 0.94756 0.96158 1.08567 1.17300 0.92575 0.90558 0.87461 1.19604 0.91493 1.02206 1.34860 0.89662 1.25990 1.02115 0.93982 0.92448 1.69792 1.33929 1.16042 1.21074 0.86237 0.80499 0.79304 0.80385 1.19242 1.19920 1.18209 1.21209 0.91059 0.98393 1.11356 1.21302 0.98675 0.93004 1.00859 1.21045 0.89906 1.00605 0.96238 1.84828 1.17310 1.37991 1.70207 0.88411 0.87607 0.88951 0.85511 0.84686 0.87602 0.85133 0.90346 0.87479 0.84106 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.09 16 2 C 0.15 1.66 8.47 -12.89 -0.11 1.55 16 3 N -0.29 -4.06 12.22 32.58 0.40 -3.66 16 4 N -0.29 -4.47 11.91 32.06 0.38 -4.09 16 5 C 0.23 3.29 7.98 -13.90 -0.11 3.18 16 6 C -0.06 -0.84 5.88 -104.94 -0.62 -1.45 16 7 C -0.08 -1.03 9.71 -39.25 -0.38 -1.41 16 8 C -0.12 -1.83 9.41 -39.32 -0.37 -2.19 16 9 C 0.02 0.38 5.88 -104.83 -0.62 -0.24 16 10 C -0.03 -0.52 5.87 -104.98 -0.62 -1.13 16 11 C -0.26 -5.39 9.41 -38.88 -0.37 -5.75 16 12 C 0.11 2.44 7.28 -39.55 -0.29 2.15 16 13 F -0.16 -3.71 17.26 2.25 0.04 -3.67 16 14 C -0.19 -4.68 8.66 -38.75 -0.34 -5.02 16 15 C 0.12 3.03 5.56 -106.88 -0.59 2.44 16 16 C -0.45 -10.98 9.05 -37.73 -0.34 -11.32 16 17 H 0.09 1.95 7.90 -52.49 -0.41 1.53 16 18 C 0.07 1.73 5.14 -17.35 -0.09 1.64 16 19 N -0.78 -19.12 10.96 55.55 0.61 -18.51 16 20 Si 0.91 17.39 29.59 -169.99 -5.03 12.36 16 21 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 24 C -0.20 -4.38 9.16 -38.51 -0.35 -4.73 16 25 C -0.12 -1.84 9.40 -39.32 -0.37 -2.21 16 26 C -0.06 -0.83 9.68 -39.25 -0.38 -1.21 16 27 O -0.22 -2.84 10.66 3.94 0.04 -2.80 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.32 8.14 -51.94 -0.42 -0.11 16 31 H 0.13 1.40 7.92 -52.49 -0.42 0.99 16 32 H 0.14 1.84 6.17 -52.48 -0.32 1.52 16 33 H 0.11 1.95 6.17 -52.49 -0.32 1.62 16 34 H 0.13 3.38 6.18 -52.49 -0.32 3.06 16 35 H 0.29 6.32 8.30 -40.82 -0.34 5.99 16 36 H 0.11 2.11 6.17 -52.48 -0.32 1.79 16 37 H 0.14 2.03 6.18 -52.49 -0.32 1.71 16 38 H 0.14 1.77 7.85 -52.49 -0.41 1.35 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -28.14 338.24 -7.29 -35.42 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.26 Total: 5.47 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -5.56 Total: -25.62 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 1.39 Total: -26.26 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.04 Total: -3.67 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.14 -7.29 -35.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239022437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.327 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds