Wall clock time and date at job start Tue Mar 31 2020 14:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30388 * 126.18591 * 2 1 4 4 N 1.28662 * 109.53583 * 179.70878 * 3 2 1 5 5 C 1.31289 * 109.24028 * 0.44942 * 4 3 2 6 6 C 1.47741 * 126.38785 * 179.82508 * 5 4 3 7 7 C 1.39676 * 120.02510 * 179.97438 * 6 5 4 8 8 C 1.37684 * 119.97412 * 180.22994 * 7 6 5 9 9 C 1.39477 * 120.02181 * 359.50351 * 8 7 6 10 10 C 1.48313 * 119.97314 * 180.24800 * 9 8 7 11 11 C 1.39750 * 119.99253 * 359.73050 * 10 9 8 12 12 C 1.38611 * 120.34130 * 179.71861 * 11 10 9 13 13 F 1.35108 * 119.82956 * 180.29376 * 12 11 10 14 14 C 1.37944 * 120.33873 * 0.55266 * 12 11 10 15 15 C 1.40724 * 119.97253 * 359.72216 * 14 12 11 16 16 C 1.41433 * 120.16743 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99566 * 154.76145 * 16 15 14 18 18 C 1.39927 * 120.00106 * 334.76227 * 16 15 14 19 19 N 1.30824 * 119.99939 * 342.77773 * 18 16 15 20 20 Si 1.86801 * 119.99623 * 162.78134 * 18 16 15 21 21 H 1.48500 * 109.47321 * 90.00250 * 20 18 16 22 22 H 1.48503 * 109.46821 * 209.99847 * 20 18 16 23 23 H 1.48496 * 109.47224 * 329.99477 * 20 18 16 24 24 C 1.38799 * 119.99502 * 179.97438 * 10 9 8 25 25 C 1.39481 * 120.05002 * 0.26991 * 9 8 7 26 26 C 1.37683 * 120.02280 * 359.97438 * 25 9 8 27 27 O 1.34420 * 126.17896 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46851 * 270.02414 * 1 2 3 29 29 H 1.09005 * 109.46706 * 30.01718 * 1 2 3 30 30 H 1.08988 * 109.47003 * 150.02236 * 1 2 3 31 31 H 1.07993 * 120.01218 * 359.97438 * 7 6 5 32 32 H 1.08004 * 119.98642 * 179.77360 * 8 7 6 33 33 H 1.07997 * 119.82562 * 359.97008 * 11 10 9 34 34 H 1.07998 * 120.01372 * 179.74156 * 14 12 11 35 35 H 0.97007 * 120.00088 * 180.02562 * 19 18 16 36 36 H 1.08010 * 120.15858 * 0.02799 * 24 10 9 37 37 H 1.07998 * 119.98766 * 180.02562 * 25 9 8 38 38 H 1.08001 * 120.01083 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0524 0.0000 4 7 3.5095 0.6837 0.0062 5 6 3.5689 -0.6278 0.0006 6 6 4.7967 -1.4496 0.0011 7 6 4.7048 -2.8433 -0.0048 8 6 5.8496 -3.6082 0.0004 9 6 7.1008 -2.9917 0.0011 10 6 8.3333 -3.8167 0.0012 11 6 8.2406 -5.2111 0.0062 12 6 9.3878 -5.9891 0.0005 13 9 9.2861 -7.3363 -0.0006 14 6 10.6327 -5.3949 0.0011 15 6 10.7420 -3.9919 0.0018 16 6 12.0164 -3.3783 0.0019 17 1 12.1357 -2.3816 -0.3965 18 6 13.1223 -4.0626 0.5181 19 7 12.9453 -5.1015 1.2933 20 14 14.8515 -3.4927 0.1003 21 1 15.3047 -2.5039 1.1114 22 1 15.7709 -4.6589 0.1019 23 1 14.8537 -2.8625 -1.2442 24 6 9.5786 -3.2036 0.0013 25 6 7.1937 -1.6000 0.0022 26 6 6.0501 -0.8332 0.0020 27 8 2.3005 -1.0850 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5134 31 1 3.7362 -3.3208 -0.0092 32 1 5.7788 -4.6859 -0.0004 33 1 7.2701 -5.6849 0.0106 34 1 11.5230 -6.0061 0.0008 35 1 13.7120 -5.5757 1.6515 36 1 9.6530 -2.1261 0.0018 37 1 8.1629 -1.1237 0.0023 38 1 6.1222 0.2444 0.0033 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239022437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:49 Heat of formation + Delta-G solvation = 10.382181 kcal Electronic energy + Delta-G solvation = -24746.393704 eV Core-core repulsion = 20854.746268 eV Total energy + Delta-G solvation = -3891.647436 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.58737 -45.22926 -40.64556 -38.92033 -37.29587 -35.87091 -34.48460 -32.91476 -32.40633 -31.42538 -30.30319 -28.46200 -27.44210 -25.55505 -24.36578 -23.51337 -23.27931 -22.00972 -21.87997 -19.49472 -18.89045 -18.53435 -17.85871 -17.43916 -16.91534 -16.76274 -16.49516 -16.26082 -15.96830 -15.85215 -15.28981 -14.83886 -14.76162 -14.40722 -14.39621 -13.96562 -13.91071 -13.60943 -13.56405 -13.43101 -13.09864 -13.03648 -12.93749 -12.69532 -12.65068 -12.25525 -12.13405 -12.05585 -11.76456 -11.48023 -11.33487 -11.00735 -10.06518 -10.02700 -9.43017 -8.82515 -8.68958 -6.47542 -0.78601 0.32815 0.35545 0.76464 1.01338 1.11378 1.38015 1.41122 1.52370 1.57217 2.18013 2.51743 2.72707 2.87155 3.32360 3.53624 3.57879 3.69807 3.88933 3.93044 4.02391 4.16983 4.30853 4.35493 4.43285 4.46510 4.58421 4.60133 4.72433 4.81503 4.87383 4.99686 5.03265 5.06252 5.18385 5.23395 5.28645 5.40686 5.59408 5.69318 5.78934 5.88639 5.92366 6.21836 6.53030 6.81006 6.82222 7.15217 8.24490 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.002430 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.650807 B =11520.288769 C =12691.558969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.171 3.829 3 N -0.326 5.326 4 N -0.308 5.308 5 C 0.215 3.785 6 C -0.051 4.051 7 C -0.070 4.070 8 C -0.116 4.116 9 C -0.007 4.007 10 C -0.014 4.014 11 C -0.256 4.256 12 C 0.094 3.906 13 F -0.165 7.165 14 C -0.221 4.221 15 C 0.100 3.900 16 C -0.484 4.484 17 H 0.091 0.909 18 C 0.034 3.966 19 N -0.820 5.820 20 Si 0.984 3.016 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.213 4.213 25 C -0.117 4.117 26 C -0.061 4.061 27 O -0.223 6.223 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.291 0.709 36 H 0.122 0.878 37 H 0.143 0.857 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.615 5.666 -1.983 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.039 4.039 3 N -0.172 5.172 4 N -0.155 5.155 5 C 0.006 3.994 6 C -0.053 4.053 7 C -0.089 4.089 8 C -0.134 4.134 9 C -0.008 4.008 10 C -0.014 4.014 11 C -0.276 4.276 12 C 0.075 3.925 13 F -0.144 7.144 14 C -0.241 4.241 15 C 0.097 3.903 16 C -0.513 4.513 17 H 0.109 0.891 18 C -0.182 4.182 19 N -0.445 5.445 20 Si 0.804 3.196 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.232 4.232 25 C -0.135 4.135 26 C -0.080 4.080 27 O -0.104 6.104 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.161 0.839 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.176 6.727 -1.828 19.467 hybrid contribution 0.862 -1.531 0.080 1.759 sum -17.313 5.196 -1.748 18.161 Atomic orbital electron populations 1.20773 0.75994 1.07537 1.07120 1.29190 0.99460 0.78442 0.96821 1.74324 0.96155 1.27032 1.19706 1.74677 1.12877 1.09135 1.18795 1.25562 0.84018 0.90207 0.99564 1.17344 0.86456 0.91962 1.09574 1.21272 0.99874 0.91097 0.96669 1.21342 0.90451 1.01331 1.00262 1.19219 0.92558 0.93277 0.95733 1.18314 0.91992 0.91750 0.99364 1.20618 0.96391 0.93083 1.17461 1.17746 0.95358 0.75674 1.03761 1.91339 1.97268 1.31196 1.94570 1.21313 0.94783 0.96497 1.11535 1.17636 0.93861 0.90801 0.87980 1.19899 0.92347 1.02893 1.36131 0.89139 1.26853 1.05871 0.93811 0.91712 1.69864 1.35256 1.17308 1.22121 0.85165 0.75359 0.78886 0.80170 1.18439 1.19466 1.17851 1.21430 0.91109 0.99149 1.11545 1.21328 0.99281 0.92560 1.00322 1.21109 0.89680 1.01026 0.96170 1.84847 1.16803 1.38454 1.70274 0.86120 0.86061 0.86547 0.82728 0.83403 0.84717 0.87313 0.89845 0.85983 0.83895 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 71.24 0.75 0.40 16 2 C 0.17 3.30 8.47 88.32 0.75 4.05 16 3 N -0.33 -8.69 12.22 -165.31 -2.02 -10.71 16 4 N -0.31 -9.21 11.91 -166.31 -1.98 -11.19 16 5 C 0.21 5.74 7.98 87.29 0.70 6.44 16 6 C -0.05 -1.34 5.88 -20.07 -0.12 -1.46 16 7 C -0.07 -1.64 9.71 22.49 0.22 -1.42 16 8 C -0.12 -3.12 9.41 22.44 0.21 -2.91 16 9 C -0.01 -0.23 5.88 -20.00 -0.12 -0.35 16 10 C -0.01 -0.56 5.87 -20.10 -0.12 -0.68 16 11 C -0.26 -10.60 9.41 22.72 0.21 -10.39 16 12 C 0.09 4.45 7.28 22.29 0.16 4.61 16 13 F -0.16 -7.55 17.26 44.97 0.78 -6.77 16 14 C -0.22 -11.51 8.66 22.81 0.20 -11.31 16 15 C 0.10 5.09 5.56 -21.33 -0.12 4.97 16 16 C -0.48 -24.36 9.05 23.47 0.21 -24.14 16 17 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 18 C 0.03 1.62 5.14 85.25 0.44 2.05 16 19 N -0.82 -41.75 10.96 21.82 0.24 -41.51 16 20 Si 0.98 36.30 29.59 68.60 2.03 38.33 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 24 C -0.21 -9.48 9.16 22.96 0.21 -9.27 16 25 C -0.12 -3.45 9.40 22.44 0.21 -3.24 16 26 C -0.06 -1.62 9.68 22.49 0.22 -1.40 16 27 O -0.22 -5.02 10.66 -8.81 -0.09 -5.12 16 28 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.16 2.77 7.92 -2.91 -0.02 2.75 16 32 H 0.15 3.55 6.17 -2.91 -0.02 3.54 16 33 H 0.14 4.69 6.17 -2.91 -0.02 4.67 16 34 H 0.11 6.03 6.18 -2.91 -0.02 6.01 16 35 H 0.29 13.41 8.30 -92.70 -0.77 12.64 16 36 H 0.12 4.89 6.17 -2.91 -0.02 4.87 16 37 H 0.14 4.05 6.18 -2.91 -0.02 4.03 16 38 H 0.15 3.60 7.85 -2.91 -0.02 3.58 16 Total: -1.00 -63.75 338.24 4.10 -59.65 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 1.13 Total: 21.37 kcal Atomic # 6 Polarization: -48.07 SS G_CDS: 4.01 Total: -44.05 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -3.76 Total: -63.41 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.09 Total: -5.12 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.78 Total: -6.77 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -63.75 4.10 -59.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239022437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.031 kcal (2) G-P(sol) polarization free energy of solvation -63.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds