Wall clock time and date at job start Tue Mar 31 2020 14:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30441 * 126.17678 * 2 1 4 4 N 1.28673 * 109.52925 * 179.82374 * 3 2 1 5 5 C 1.31351 * 109.22709 * 0.44513 * 4 3 2 6 6 C 1.47636 * 126.38173 * 179.69680 * 5 4 3 7 7 C 1.39808 * 119.99469 * 179.76581 * 6 5 4 8 8 C 1.36578 * 120.00220 * 179.71692 * 7 6 5 9 9 C 1.39843 * 119.99786 * 0.53592 * 8 7 6 10 10 C 1.47683 * 120.00610 * 179.76070 * 9 8 7 11 11 C 1.39187 * 120.27107 * 129.97853 * 10 9 8 12 12 C 1.38064 * 120.16617 * 180.02562 * 11 10 9 13 13 C 1.38860 * 120.73599 * 359.97438 * 12 11 10 14 14 C 1.37705 * 120.54159 * 359.97438 * 13 12 11 15 15 F 1.35101 * 120.09664 * 180.02562 * 14 13 12 16 16 C 1.41049 * 119.80491 * 359.78869 * 14 13 12 17 17 C 1.40723 * 120.35418 * 180.25865 * 16 14 13 18 18 H 1.08000 * 120.00118 * 136.33657 * 17 16 14 19 19 C 1.40082 * 119.99873 * 316.33483 * 17 16 14 20 20 N 1.30777 * 120.00286 * 160.74404 * 19 17 16 21 21 Si 1.86798 * 119.99896 * 340.74825 * 19 17 16 22 22 H 1.48499 * 109.47034 * 95.27261 * 21 19 17 23 23 H 1.48496 * 109.47291 * 215.27303 * 21 19 17 24 24 H 1.48506 * 109.47243 * 335.27248 * 21 19 17 25 25 C 1.39839 * 119.98732 * 359.74267 * 9 8 7 26 26 C 1.36576 * 120.00024 * 359.97438 * 25 9 8 27 27 O 1.34399 * 126.17855 * 180.30714 * 2 1 3 28 28 H 1.08999 * 109.47263 * 269.68638 * 1 2 3 29 29 H 1.09005 * 109.47323 * 149.68987 * 1 2 3 30 30 H 1.09002 * 109.46958 * 29.69182 * 1 2 3 31 31 H 1.08001 * 119.99499 * 0.02562 * 7 6 5 32 32 H 1.07999 * 120.00134 * 180.29731 * 8 7 6 33 33 H 1.07992 * 119.91732 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.63205 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.73314 * 179.97438 * 13 12 11 36 36 H 0.97001 * 120.00338 * 179.97438 * 20 19 17 37 37 H 1.08005 * 119.99768 * 180.02562 * 25 9 8 38 38 H 1.08004 * 120.00230 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0529 0.0000 4 7 3.5097 0.6843 0.0037 5 6 3.5689 -0.6279 -0.0034 6 6 4.7957 -1.4492 -0.0085 7 6 4.7029 -2.8441 -0.0110 8 6 5.8377 -3.6041 -0.0216 9 6 7.0925 -2.9868 -0.0186 10 6 8.3197 -3.8084 -0.0247 11 6 9.3318 -3.5511 -0.9450 12 6 10.4779 -4.3208 -0.9491 13 6 10.6394 -5.3582 -0.0402 14 6 9.6576 -5.6381 0.8839 15 9 9.8243 -6.6491 1.7643 16 6 8.4795 -4.8629 0.9117 17 6 7.4711 -5.1354 1.8546 18 1 6.9916 -4.3241 2.3822 19 6 7.0892 -6.4589 2.1090 20 7 6.4524 -6.7553 3.2122 21 14 7.4896 -7.8006 0.8726 22 1 8.7561 -8.4710 1.2624 23 1 6.3889 -8.7971 0.8495 24 1 7.6423 -7.2004 -0.4772 25 6 7.1851 -1.5915 -0.0102 26 6 6.0501 -0.8319 -0.0055 27 8 2.3003 -1.0848 -0.0058 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3634 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5091 31 1 3.7338 -3.3208 -0.0096 32 1 5.7660 -4.6816 -0.0284 33 1 9.2202 -2.7473 -1.6576 34 1 11.2579 -4.1134 -1.6667 35 1 11.5424 -5.9503 -0.0582 36 1 6.1876 -7.6717 3.3882 37 1 8.1542 -1.1146 -0.0083 38 1 6.1216 0.2458 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239022941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:22 Heat of formation + Delta-G solvation = 38.084349 kcal Electronic energy + Delta-G solvation = -25801.938791 eV Core-core repulsion = 21911.492611 eV Total energy + Delta-G solvation = -3890.446180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.79868 -44.04321 -39.21669 -37.36921 -36.09779 -33.84898 -33.44431 -31.85806 -30.96622 -30.31263 -29.16053 -27.39180 -25.56057 -24.02428 -23.03110 -21.99934 -21.69611 -20.92640 -20.22853 -17.99238 -17.58401 -17.36322 -16.61175 -16.01349 -15.76265 -15.24932 -14.83154 -14.64647 -14.48632 -14.19749 -14.10051 -13.58366 -13.50229 -13.18750 -13.08336 -13.00284 -12.69198 -12.39176 -12.27778 -11.91751 -11.85941 -11.79211 -11.47628 -11.20448 -10.98024 -10.88575 -10.72625 -10.33900 -10.29321 -9.94256 -9.74339 -9.29739 -8.70303 -8.40885 -7.70544 -7.53223 -7.07672 -4.67757 0.59980 1.66206 1.84326 2.21509 2.24222 2.28678 2.68272 3.08275 3.11369 3.17418 3.82461 3.88992 4.11304 4.30700 4.36695 4.80319 4.91139 5.02346 5.15387 5.23105 5.26257 5.31596 5.41382 5.49732 5.56833 5.68343 5.70822 5.78253 5.93755 5.97220 6.14243 6.22712 6.41800 6.50008 6.64265 6.73149 6.93832 6.97409 7.04671 7.18088 7.24733 7.40123 7.48463 7.78348 8.12964 8.32900 8.34228 8.53785 9.91975 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.003524 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.595838 B = 7943.769389 C = 9095.904323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.145 3.855 3 N -0.287 5.287 4 N -0.293 5.293 5 C 0.234 3.766 6 C -0.067 4.067 7 C -0.080 4.080 8 C -0.092 4.092 9 C 0.049 3.951 10 C -0.153 4.153 11 C -0.069 4.069 12 C -0.212 4.212 13 C -0.111 4.111 14 C -0.015 4.015 15 F -0.145 7.145 16 C 0.084 3.916 17 C -0.449 4.449 18 H 0.101 0.899 19 C 0.093 3.907 20 N -0.792 5.792 21 Si 0.899 3.101 22 H -0.257 1.257 23 H -0.289 1.289 24 H -0.249 1.249 25 C -0.132 4.132 26 C -0.061 4.061 27 O -0.222 6.222 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.287 0.713 37 H 0.130 0.870 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.438 5.907 -6.948 11.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.066 4.066 3 N -0.135 5.135 4 N -0.140 5.140 5 C 0.028 3.972 6 C -0.069 4.069 7 C -0.100 4.100 8 C -0.110 4.110 9 C 0.049 3.951 10 C -0.154 4.154 11 C -0.087 4.087 12 C -0.231 4.231 13 C -0.130 4.130 14 C -0.035 4.035 15 F -0.124 7.124 16 C 0.081 3.919 17 C -0.477 4.477 18 H 0.119 0.881 19 C -0.129 4.129 20 N -0.414 5.414 21 Si 0.724 3.276 22 H -0.181 1.181 23 H -0.216 1.216 24 H -0.173 1.173 25 C -0.151 4.151 26 C -0.081 4.081 27 O -0.102 6.102 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.156 0.844 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.148 0.852 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.260 6.983 -6.688 11.519 hybrid contribution -0.232 -2.104 -0.069 2.117 sum -6.492 4.879 -6.757 10.565 Atomic orbital electron populations 1.20295 0.80411 1.05448 1.05067 1.27913 0.97705 0.79714 1.01237 1.74341 0.96343 1.25711 1.17114 1.74753 1.11560 1.08430 1.19260 1.25704 0.83389 0.90337 0.97753 1.17198 0.86268 0.91436 1.11992 1.20841 0.99422 0.91494 0.98252 1.21065 0.90708 1.01049 0.98222 1.18993 0.92987 0.92026 0.91130 1.18534 0.94427 1.02964 0.99499 1.20796 0.92786 0.97852 0.97287 1.20197 0.99362 1.00208 1.03325 1.20752 0.97719 0.98695 0.95838 1.17964 0.96628 0.94142 0.94739 1.91240 1.95325 1.57699 1.68106 1.17610 0.91762 0.90680 0.91877 1.19190 1.17097 0.94051 1.17344 0.88141 1.26091 0.92420 0.99521 0.94822 1.69660 1.28474 1.22108 1.21189 0.86609 0.78604 0.80349 0.82080 1.18141 1.21579 1.17258 1.20983 0.98132 0.93026 1.02912 1.20674 0.90102 1.00203 0.97077 1.84836 1.17372 1.37884 1.70130 0.88503 0.89025 0.87756 0.85828 0.84419 0.87564 0.87459 0.87318 0.90188 0.85233 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.37 10.51 36.00 0.38 0.01 16 2 C 0.14 1.87 8.47 -12.87 -0.11 1.76 16 3 N -0.29 -4.53 12.22 32.58 0.40 -4.14 16 4 N -0.29 -5.05 11.91 32.04 0.38 -4.67 16 5 C 0.23 3.87 7.98 -13.92 -0.11 3.76 16 6 C -0.07 -1.10 5.88 -104.89 -0.62 -1.72 16 7 C -0.08 -1.34 9.66 -39.59 -0.38 -1.72 16 8 C -0.09 -1.70 8.33 -39.58 -0.33 -2.03 16 9 C 0.05 0.92 5.03 -104.84 -0.53 0.40 16 10 C -0.15 -3.13 5.51 -104.27 -0.58 -3.70 16 11 C -0.07 -1.26 9.48 -39.29 -0.37 -1.63 16 12 C -0.21 -3.81 10.02 -39.42 -0.40 -4.21 16 13 C -0.11 -2.20 9.99 -39.55 -0.40 -2.59 16 14 C -0.01 -0.34 5.65 -38.71 -0.22 -0.56 16 15 F -0.14 -3.50 12.91 2.25 0.03 -3.47 16 16 C 0.08 1.96 4.68 -106.48 -0.50 1.46 16 17 C -0.45 -11.20 6.90 -37.95 -0.26 -11.46 16 18 H 0.10 2.67 7.79 -52.49 -0.41 2.27 16 19 C 0.09 2.31 4.98 -17.31 -0.09 2.22 16 20 N -0.79 -20.20 13.93 55.56 0.77 -19.43 16 21 Si 0.90 20.14 24.72 -169.99 -4.20 15.94 16 22 H -0.26 -5.85 6.29 56.52 0.36 -5.49 16 23 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.25 -5.58 7.11 56.52 0.40 -5.18 16 25 C -0.13 -2.16 9.45 -39.58 -0.37 -2.53 16 26 C -0.06 -0.96 9.64 -39.59 -0.38 -1.34 16 27 O -0.22 -3.33 10.65 3.97 0.04 -3.28 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.12 1.84 7.92 -52.49 -0.42 1.42 16 32 H 0.14 2.67 7.32 -52.49 -0.38 2.28 16 33 H 0.11 1.64 8.03 -52.49 -0.42 1.22 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 37 H 0.13 1.87 8.04 -52.48 -0.42 1.45 16 38 H 0.13 1.88 7.85 -52.48 -0.41 1.46 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -28.41 334.81 -6.55 -34.96 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.76 Total: 2.93 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -5.26 Total: -23.88 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 1.55 Total: -28.24 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.03 Total: -3.47 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.20 Total: 15.94 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.41 -6.55 -34.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239022941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.043 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds