Wall clock time and date at job start Tue Mar 31 2020 14:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30441 * 126.17678 * 2 1 4 4 N 1.28673 * 109.52925 * 179.82374 * 3 2 1 5 5 C 1.31351 * 109.22709 * 0.44513 * 4 3 2 6 6 C 1.47636 * 126.38173 * 179.69680 * 5 4 3 7 7 C 1.39808 * 119.99469 * 179.76581 * 6 5 4 8 8 C 1.36578 * 120.00220 * 179.71692 * 7 6 5 9 9 C 1.39843 * 119.99786 * 0.53592 * 8 7 6 10 10 C 1.47683 * 120.00610 * 179.76070 * 9 8 7 11 11 C 1.39187 * 120.27107 * 129.97853 * 10 9 8 12 12 C 1.38064 * 120.16617 * 180.02562 * 11 10 9 13 13 C 1.38860 * 120.73599 * 359.97438 * 12 11 10 14 14 C 1.37705 * 120.54159 * 359.97438 * 13 12 11 15 15 F 1.35101 * 120.09664 * 180.02562 * 14 13 12 16 16 C 1.41049 * 119.80491 * 359.78869 * 14 13 12 17 17 C 1.40723 * 120.35418 * 180.25865 * 16 14 13 18 18 H 1.08000 * 120.00118 * 136.33657 * 17 16 14 19 19 C 1.40082 * 119.99873 * 316.33483 * 17 16 14 20 20 N 1.30777 * 120.00286 * 160.74404 * 19 17 16 21 21 Si 1.86798 * 119.99896 * 340.74825 * 19 17 16 22 22 H 1.48499 * 109.47034 * 95.27261 * 21 19 17 23 23 H 1.48496 * 109.47291 * 215.27303 * 21 19 17 24 24 H 1.48506 * 109.47243 * 335.27248 * 21 19 17 25 25 C 1.39839 * 119.98732 * 359.74267 * 9 8 7 26 26 C 1.36576 * 120.00024 * 359.97438 * 25 9 8 27 27 O 1.34399 * 126.17855 * 180.30714 * 2 1 3 28 28 H 1.08999 * 109.47263 * 269.68638 * 1 2 3 29 29 H 1.09005 * 109.47323 * 149.68987 * 1 2 3 30 30 H 1.09002 * 109.46958 * 29.69182 * 1 2 3 31 31 H 1.08001 * 119.99499 * 0.02562 * 7 6 5 32 32 H 1.07999 * 120.00134 * 180.29731 * 8 7 6 33 33 H 1.07992 * 119.91732 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.63205 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.73314 * 179.97438 * 13 12 11 36 36 H 0.97001 * 120.00338 * 179.97438 * 20 19 17 37 37 H 1.08005 * 119.99768 * 180.02562 * 25 9 8 38 38 H 1.08004 * 120.00230 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0529 0.0000 4 7 3.5097 0.6843 0.0037 5 6 3.5689 -0.6279 -0.0034 6 6 4.7957 -1.4492 -0.0085 7 6 4.7029 -2.8441 -0.0110 8 6 5.8377 -3.6041 -0.0216 9 6 7.0925 -2.9868 -0.0186 10 6 8.3197 -3.8084 -0.0247 11 6 9.3318 -3.5511 -0.9450 12 6 10.4779 -4.3208 -0.9491 13 6 10.6394 -5.3582 -0.0402 14 6 9.6576 -5.6381 0.8839 15 9 9.8243 -6.6491 1.7643 16 6 8.4795 -4.8629 0.9117 17 6 7.4711 -5.1354 1.8546 18 1 6.9916 -4.3241 2.3822 19 6 7.0892 -6.4589 2.1090 20 7 6.4524 -6.7553 3.2122 21 14 7.4896 -7.8006 0.8726 22 1 8.7561 -8.4710 1.2624 23 1 6.3889 -8.7971 0.8495 24 1 7.6423 -7.2004 -0.4772 25 6 7.1851 -1.5915 -0.0102 26 6 6.0501 -0.8319 -0.0055 27 8 2.3003 -1.0848 -0.0058 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3634 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5091 31 1 3.7338 -3.3208 -0.0096 32 1 5.7660 -4.6816 -0.0284 33 1 9.2202 -2.7473 -1.6576 34 1 11.2579 -4.1134 -1.6667 35 1 11.5424 -5.9503 -0.0582 36 1 6.1876 -7.6717 3.3882 37 1 8.1542 -1.1146 -0.0083 38 1 6.1216 0.2458 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239022941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:21 Heat of formation + Delta-G solvation = 19.663319 kcal Electronic energy + Delta-G solvation = -25802.737586 eV Core-core repulsion = 21911.492611 eV Total energy + Delta-G solvation = -3891.244976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.57841 -45.20863 -40.63327 -38.89394 -37.28323 -35.57129 -34.64315 -33.09734 -32.39164 -31.81579 -30.46170 -28.56921 -27.19823 -25.37736 -24.23044 -23.31333 -23.08288 -22.43862 -21.70250 -19.74762 -18.84949 -18.52038 -18.11160 -17.47618 -17.24880 -16.84284 -16.26000 -16.07110 -16.00467 -15.79452 -15.33273 -14.93304 -14.80792 -14.46854 -14.33996 -14.09902 -13.78765 -13.62934 -13.58589 -13.42923 -13.39808 -13.06961 -12.97270 -12.86505 -12.47057 -12.24664 -12.12732 -12.02013 -11.81751 -11.44373 -11.16198 -11.05413 -10.03173 -9.83342 -9.36849 -9.00114 -8.87905 -6.50535 -0.66925 0.35554 0.50573 0.63784 0.81404 1.15670 1.27716 1.31101 1.37572 1.40174 2.09557 2.55330 2.75568 2.79898 3.23125 3.32954 3.74651 3.78690 3.95702 4.00599 4.08184 4.21359 4.29150 4.36885 4.43467 4.52581 4.56354 4.60696 4.69812 4.71248 4.84147 4.87926 5.04273 5.10204 5.21523 5.32196 5.37232 5.52104 5.56439 5.60224 5.73633 5.89707 5.95944 6.12275 6.30322 6.63056 6.75343 7.15179 8.18543 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.003524 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.595838 B = 7943.769389 C = 9095.904323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.166 3.834 3 N -0.322 5.322 4 N -0.306 5.306 5 C 0.217 3.783 6 C -0.062 4.062 7 C -0.082 4.082 8 C -0.103 4.103 9 C 0.022 3.978 10 C -0.143 4.143 11 C -0.072 4.072 12 C -0.182 4.182 13 C -0.117 4.117 14 C -0.045 4.045 15 F -0.160 7.160 16 C 0.062 3.938 17 C -0.475 4.475 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.843 5.843 21 Si 0.938 3.062 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.251 1.251 25 C -0.119 4.119 26 C -0.060 4.060 27 O -0.228 6.228 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.290 0.710 37 H 0.154 0.846 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 7.748 -9.617 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 N -0.169 5.169 4 N -0.153 5.153 5 C 0.010 3.990 6 C -0.064 4.064 7 C -0.102 4.102 8 C -0.121 4.121 9 C 0.021 3.979 10 C -0.145 4.145 11 C -0.090 4.090 12 C -0.201 4.201 13 C -0.136 4.136 14 C -0.064 4.064 15 F -0.139 7.139 16 C 0.058 3.942 17 C -0.505 4.505 18 H 0.083 0.917 19 C -0.151 4.151 20 N -0.470 5.470 21 Si 0.762 3.238 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.174 1.174 25 C -0.137 4.137 26 C -0.079 4.079 27 O -0.109 6.109 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.153 0.847 32 H 0.136 0.864 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.153 0.847 36 H 0.101 0.899 37 H 0.172 0.828 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.975 8.844 -9.374 14.205 hybrid contribution -0.322 -2.370 0.551 2.455 sum -6.296 6.474 -8.823 12.625 Atomic orbital electron populations 1.20756 0.76069 1.07518 1.07007 1.29184 0.99496 0.78464 0.97300 1.74307 0.96170 1.26821 1.19568 1.74675 1.12748 1.08709 1.19173 1.25613 0.83905 0.90279 0.99239 1.17339 0.86986 0.91300 1.10757 1.20904 0.99430 0.91758 0.98062 1.20976 0.91647 1.00342 0.99137 1.19067 0.92383 0.93102 0.93353 1.18903 0.95543 1.01348 0.98666 1.21269 0.92010 0.98759 0.96969 1.20823 0.99718 0.97617 1.01951 1.21154 0.97771 0.99474 0.95199 1.18390 0.97713 0.94452 0.95884 1.91193 1.95433 1.58423 1.68892 1.17820 0.91571 0.92252 0.92510 1.18921 1.18856 0.93202 1.19508 0.91711 1.26518 0.92335 1.00701 0.95557 1.69701 1.31976 1.22538 1.22758 0.86007 0.78243 0.79002 0.80564 1.18938 1.20440 1.17437 1.21152 0.99428 0.91795 1.01335 1.20874 0.89596 1.01037 0.96378 1.84861 1.17115 1.38691 1.70230 0.86338 0.86791 0.85753 0.84652 0.86353 0.83728 0.82961 0.84687 0.89947 0.82808 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 71.23 0.75 0.17 16 2 C 0.17 3.95 8.47 88.31 0.75 4.70 16 3 N -0.32 -9.72 12.22 -165.29 -2.02 -11.74 16 4 N -0.31 -10.26 11.91 -166.31 -1.98 -12.24 16 5 C 0.22 6.99 7.98 87.25 0.70 7.69 16 6 C -0.06 -2.00 5.88 -20.04 -0.12 -2.12 16 7 C -0.08 -2.76 9.66 22.26 0.22 -2.54 16 8 C -0.10 -3.90 8.33 22.27 0.19 -3.72 16 9 C 0.02 0.80 5.03 -20.01 -0.10 0.70 16 10 C -0.14 -5.72 5.51 -19.64 -0.11 -5.82 16 11 C -0.07 -2.34 9.48 22.46 0.21 -2.13 16 12 C -0.18 -5.68 10.02 22.38 0.22 -5.46 16 13 C -0.12 -4.31 9.99 22.29 0.22 -4.09 16 14 C -0.04 -2.03 5.65 22.83 0.13 -1.91 16 15 F -0.16 -7.92 12.91 44.97 0.58 -7.34 16 16 C 0.06 2.91 4.68 -21.07 -0.10 2.81 16 17 C -0.48 -25.17 6.90 23.32 0.16 -25.01 16 18 H 0.06 3.76 7.79 -2.91 -0.02 3.74 16 19 C 0.06 3.40 4.98 85.30 0.42 3.82 16 20 N -0.84 -46.14 13.93 21.85 0.30 -45.83 16 21 Si 0.94 43.03 24.72 68.60 1.70 44.72 16 22 H -0.26 -12.26 6.29 99.48 0.63 -11.63 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.25 -11.31 7.11 99.48 0.71 -10.60 16 25 C -0.12 -3.67 9.45 22.27 0.21 -3.46 16 26 C -0.06 -1.78 9.64 22.26 0.21 -1.57 16 27 O -0.23 -6.56 10.65 -8.70 -0.09 -6.65 16 28 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.14 4.10 7.92 -2.91 -0.02 4.08 16 32 H 0.12 4.90 7.32 -2.91 -0.02 4.87 16 33 H 0.15 3.65 8.03 -2.91 -0.02 3.62 16 34 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 36 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 37 H 0.15 3.92 8.04 -2.91 -0.02 3.89 16 38 H 0.15 3.93 7.85 -2.91 -0.02 3.91 16 Total: -1.00 -66.14 334.81 3.48 -62.66 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.03 Total: 14.35 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 3.97 Total: -37.93 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -3.70 Total: -69.81 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.09 Total: -6.65 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.58 Total: -7.34 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.70 Total: 44.72 kcal Total: -66.14 3.48 -62.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239022941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.322 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds