Wall clock time and date at job start Tue Mar 31 2020 13:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86804 * 119.99888 * 2 1 4 4 H 1.48501 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47144 * 300.00221 * 3 2 1 6 6 H 1.48505 * 109.47013 * 60.00134 * 3 2 1 7 7 C 1.38633 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99809 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.35665 * 117.00034 * 174.93386 * 9 7 2 11 11 C 1.38693 * 120.12581 * 5.60016 * 10 9 7 12 12 C 1.38340 * 120.03226 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.86441 * 179.97438 * 12 11 10 14 14 C 1.38684 * 120.27066 * 359.97438 * 12 11 10 15 15 C 1.37967 * 120.25085 * 359.97438 * 14 12 11 16 16 C 1.39322 * 119.96531 * 359.74298 * 15 14 12 17 17 C 1.48232 * 120.13639 * 180.25491 * 16 15 14 18 18 C 1.39463 * 120.05902 * 130.02034 * 17 16 15 19 19 C 1.37864 * 119.93522 * 179.74571 * 18 17 16 20 20 C 1.38946 * 120.06322 * 0.53125 * 19 18 17 21 21 N 1.40108 * 119.94014 * 179.76386 * 20 19 18 22 22 C 1.35235 * 126.05268 * 359.69714 * 21 20 19 23 23 C 1.35325 * 107.70897 * 179.83670 * 22 21 20 24 24 C 1.39917 * 107.93351 * 0.42625 * 23 22 21 25 25 N 1.30882 * 108.24422 * 359.73196 * 24 23 22 26 26 C 1.38948 * 120.11986 * 359.74562 * 20 19 18 27 27 C 1.37862 * 120.06177 * 359.97438 * 26 20 19 28 28 H 0.97003 * 119.99769 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.98611 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.86825 * 179.97438 * 14 12 11 31 31 H 1.07993 * 120.01384 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.02750 * 0.02562 * 18 17 16 33 33 H 1.08001 * 119.96948 * 180.25300 * 19 18 17 34 34 H 1.07994 * 126.14397 * 359.97438 * 22 21 20 35 35 H 1.08000 * 126.03319 * 180.14982 * 23 22 21 36 36 H 1.08006 * 125.87790 * 179.77432 * 24 23 22 37 37 H 1.08003 * 119.97053 * 179.97438 * 26 20 19 38 38 H 1.08002 * 120.02916 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3965 1.2126 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0696 -3.5036 -0.1057 11 6 3.4550 -3.4400 -0.0912 12 6 4.2025 -4.5990 -0.2001 13 9 5.5517 -4.5331 -0.1861 14 6 3.5723 -5.8282 -0.3237 15 6 2.1949 -5.9048 -0.3383 16 6 1.4322 -4.7446 -0.2233 17 6 -0.0481 -4.8231 -0.2329 18 6 -0.7881 -4.1806 0.7593 19 6 -2.1649 -4.2509 0.7449 20 6 -2.8148 -4.9701 -0.2506 21 7 -4.2139 -5.0439 -0.2599 22 6 -5.0471 -4.4707 0.6379 23 6 -6.3149 -4.7749 0.2756 24 6 -6.2555 -5.5678 -0.8757 25 7 -4.9971 -5.7295 -1.1974 26 6 -2.0797 -5.6159 -1.2371 27 6 -0.7029 -5.5442 -1.2309 28 1 -0.4850 0.8401 0.0004 29 1 3.9506 -2.4852 0.0044 30 1 4.1623 -6.7289 -0.4087 31 1 1.7082 -6.8640 -0.4351 32 1 -0.2832 -3.6249 1.5356 33 1 -2.7387 -3.7502 1.5108 34 1 -4.7535 -3.8751 1.4896 35 1 -7.2139 -4.4646 0.7875 36 1 -7.1022 -5.9757 -1.4079 37 1 -2.5873 -6.1746 -2.0095 38 1 -0.1321 -6.0460 -1.9982 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241393143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:03 Heat of formation + Delta-G solvation = 62.749892 kcal Electronic energy + Delta-G solvation = -25624.472788 eV Core-core repulsion = 21735.096186 eV Total energy + Delta-G solvation = -3889.376602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.39056 -41.38277 -39.56932 -38.27984 -36.44093 -33.54704 -32.49109 -31.04526 -30.62832 -29.87458 -29.38188 -27.36583 -25.58364 -23.53937 -22.92812 -21.89320 -21.42638 -20.33788 -20.17097 -18.40531 -18.11767 -17.57989 -16.22726 -15.55129 -15.32713 -15.17075 -15.10289 -15.05116 -14.61547 -14.33316 -14.04906 -13.79879 -13.53905 -13.43772 -13.33189 -13.12362 -12.74466 -12.64621 -12.42681 -12.21577 -11.76527 -11.38224 -11.09512 -11.00783 -10.90877 -10.76265 -10.56579 -10.48634 -10.07733 -9.71409 -9.07203 -9.02955 -8.67127 -8.34435 -7.83115 -7.22661 -6.64730 -4.23643 0.95932 1.72132 1.75607 2.04496 2.44722 2.52060 2.79538 3.02117 3.04844 3.10036 3.80621 4.02635 4.29810 4.58453 4.74825 4.81609 4.90093 5.04187 5.15461 5.16923 5.19571 5.38892 5.48695 5.61063 5.64219 5.71110 5.83392 5.92670 5.95099 6.03027 6.26920 6.35874 6.39381 6.46413 6.68273 6.72741 6.77740 6.82623 6.85307 7.02096 7.05103 7.19531 7.40293 7.52785 7.70048 7.78102 8.79757 9.42231 10.50877 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.004035 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.523438 B = 6937.886697 C = 9278.219722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.046 3.954 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.398 4.398 8 H 0.095 0.905 9 O -0.152 6.152 10 C 0.186 3.814 11 C -0.270 4.270 12 C 0.146 3.854 13 F -0.150 7.150 14 C -0.248 4.248 15 C -0.032 4.032 16 C -0.145 4.145 17 C -0.012 4.012 18 C -0.056 4.056 19 C -0.129 4.129 20 C 0.135 3.865 21 N -0.309 5.309 22 C 0.056 3.944 23 C -0.273 4.273 24 C 0.045 3.955 25 N -0.294 5.294 26 C -0.119 4.119 27 C -0.096 4.096 28 H 0.272 0.728 29 H 0.141 0.859 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.185 0.815 37 H 0.132 0.868 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 -8.582 1.405 10.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.160 4.160 3 Si 0.765 3.235 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.473 4.473 8 H 0.113 0.887 9 O -0.053 6.053 10 C 0.129 3.871 11 C -0.290 4.290 12 C 0.127 3.873 13 F -0.129 7.129 14 C -0.268 4.268 15 C -0.050 4.050 16 C -0.146 4.146 17 C -0.012 4.012 18 C -0.074 4.074 19 C -0.150 4.150 20 C 0.044 3.956 21 N -0.084 5.084 22 C -0.088 4.088 23 C -0.302 4.302 24 C -0.141 4.141 25 N -0.114 5.114 26 C -0.139 4.139 27 C -0.114 4.114 28 H 0.082 0.918 29 H 0.159 0.841 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.194 0.806 35 H 0.168 0.832 36 H 0.202 0.798 37 H 0.150 0.850 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.188 -8.850 0.606 10.276 hybrid contribution 0.137 1.431 0.559 1.543 sum -5.051 -7.418 1.165 9.050 Atomic orbital electron populations 1.70048 1.05932 1.27982 1.44154 1.25306 0.95868 0.98898 0.95973 0.85644 0.79317 0.80093 0.78453 1.18911 1.19958 1.19939 1.21452 0.92026 0.80571 1.53296 0.88741 1.83995 1.33956 1.11280 1.76119 1.18965 0.88958 0.87646 0.91485 1.20998 0.94101 0.98390 1.15558 1.17543 0.75869 0.94393 0.99505 1.91421 1.30247 1.97378 1.93872 1.20467 0.94965 0.95805 1.15582 1.20548 0.92255 0.96527 0.95651 1.17826 0.91287 0.91029 1.14488 1.18622 0.91938 0.96395 0.94259 1.21056 0.91995 0.96165 0.98221 1.20642 0.95061 1.00693 0.98596 1.17548 0.77748 1.01784 0.98554 1.45900 1.04419 1.37987 1.20116 1.22673 0.90383 0.99387 0.96359 1.21524 0.97126 1.09510 1.02003 1.23980 0.94817 0.98582 0.96738 1.77402 1.02934 1.17993 1.13044 1.20636 0.93644 1.01186 0.98408 1.21061 0.93012 0.99316 0.98042 0.91770 0.84112 0.86069 0.85653 0.84651 0.85645 0.80614 0.83217 0.79769 0.85040 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.06 13.67 55.48 0.76 -22.30 16 2 C 0.05 1.18 5.49 -17.52 -0.10 1.08 16 3 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.40 -10.29 9.49 30.88 0.29 -10.00 16 8 H 0.10 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.15 -3.91 8.12 0.36 0.00 -3.90 16 10 C 0.19 4.12 6.56 -38.75 -0.25 3.87 16 11 C -0.27 -5.66 9.14 -39.38 -0.36 -6.02 16 12 C 0.15 2.75 7.30 -39.38 -0.29 2.46 16 13 F -0.15 -2.74 17.26 2.25 0.04 -2.70 16 14 C -0.25 -4.12 10.01 -39.52 -0.40 -4.52 16 15 C -0.03 -0.52 9.49 -39.28 -0.37 -0.89 16 16 C -0.14 -2.78 5.49 -104.72 -0.57 -3.36 16 17 C -0.01 -0.21 5.28 -104.88 -0.55 -0.77 16 18 C -0.06 -1.03 8.78 -39.26 -0.34 -1.38 16 19 C -0.13 -2.17 9.44 -39.46 -0.37 -2.54 16 20 C 0.13 2.27 6.69 -83.55 -0.56 1.71 16 21 N -0.31 -4.91 3.80 -10.66 -0.04 -4.95 16 22 C 0.06 0.74 10.79 -17.09 -0.18 0.55 16 23 C -0.27 -3.15 10.81 -39.99 -0.43 -3.58 16 24 C 0.05 0.55 12.03 -17.33 -0.21 0.34 16 25 N -0.29 -4.56 11.86 30.64 0.36 -4.20 16 26 C -0.12 -1.95 9.64 -39.46 -0.38 -2.33 16 27 C -0.10 -1.57 9.49 -39.27 -0.37 -1.94 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.14 2.98 5.64 -52.48 -0.30 2.69 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.13 1.67 8.03 -52.49 -0.42 1.24 16 32 H 0.14 2.64 7.70 -52.49 -0.40 2.24 16 33 H 0.13 1.80 6.72 -52.49 -0.35 1.45 16 34 H 0.18 1.84 7.03 -52.49 -0.37 1.47 16 35 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.19 1.53 8.06 -52.48 -0.42 1.10 16 37 H 0.13 2.02 7.68 -52.48 -0.40 1.62 16 38 H 0.13 1.82 8.03 -52.49 -0.42 1.40 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -29.64 340.01 -7.58 -37.22 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -3.34 Total: 8.60 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -5.45 Total: -27.31 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 1.08 Total: -31.45 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: 0.00 Total: -3.90 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.64 -7.58 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241393143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.965 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds