Wall clock time and date at job start Tue Mar 31 2020 13:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86804 * 119.99888 * 2 1 4 4 H 1.48501 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47144 * 300.00221 * 3 2 1 6 6 H 1.48505 * 109.47013 * 60.00134 * 3 2 1 7 7 C 1.38633 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99809 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00255 * 0.02562 * 7 2 1 10 10 C 1.35665 * 117.00034 * 174.93386 * 9 7 2 11 11 C 1.38693 * 120.12581 * 5.60016 * 10 9 7 12 12 C 1.38340 * 120.03226 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.86441 * 179.97438 * 12 11 10 14 14 C 1.38684 * 120.27066 * 359.97438 * 12 11 10 15 15 C 1.37967 * 120.25085 * 359.97438 * 14 12 11 16 16 C 1.39322 * 119.96531 * 359.74298 * 15 14 12 17 17 C 1.48232 * 120.13639 * 180.25491 * 16 15 14 18 18 C 1.39463 * 120.05902 * 130.02034 * 17 16 15 19 19 C 1.37864 * 119.93522 * 179.74571 * 18 17 16 20 20 C 1.38946 * 120.06322 * 0.53125 * 19 18 17 21 21 N 1.40108 * 119.94014 * 179.76386 * 20 19 18 22 22 C 1.35235 * 126.05268 * 359.69714 * 21 20 19 23 23 C 1.35325 * 107.70897 * 179.83670 * 22 21 20 24 24 C 1.39917 * 107.93351 * 0.42625 * 23 22 21 25 25 N 1.30882 * 108.24422 * 359.73196 * 24 23 22 26 26 C 1.38948 * 120.11986 * 359.74562 * 20 19 18 27 27 C 1.37862 * 120.06177 * 359.97438 * 26 20 19 28 28 H 0.97003 * 119.99769 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.98611 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.86825 * 179.97438 * 14 12 11 31 31 H 1.07993 * 120.01384 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.02750 * 0.02562 * 18 17 16 33 33 H 1.08001 * 119.96948 * 180.25300 * 19 18 17 34 34 H 1.07994 * 126.14397 * 359.97438 * 22 21 20 35 35 H 1.08000 * 126.03319 * 180.14982 * 23 22 21 36 36 H 1.08006 * 125.87790 * 179.77432 * 24 23 22 37 37 H 1.08003 * 119.97053 * 179.97438 * 26 20 19 38 38 H 1.08002 * 120.02916 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3965 1.2126 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0696 -3.5036 -0.1057 11 6 3.4550 -3.4400 -0.0912 12 6 4.2025 -4.5990 -0.2001 13 9 5.5517 -4.5331 -0.1861 14 6 3.5723 -5.8282 -0.3237 15 6 2.1949 -5.9048 -0.3383 16 6 1.4322 -4.7446 -0.2233 17 6 -0.0481 -4.8231 -0.2329 18 6 -0.7881 -4.1806 0.7593 19 6 -2.1649 -4.2509 0.7449 20 6 -2.8148 -4.9701 -0.2506 21 7 -4.2139 -5.0439 -0.2599 22 6 -5.0471 -4.4707 0.6379 23 6 -6.3149 -4.7749 0.2756 24 6 -6.2555 -5.5678 -0.8757 25 7 -4.9971 -5.7295 -1.1974 26 6 -2.0797 -5.6159 -1.2371 27 6 -0.7029 -5.5442 -1.2309 28 1 -0.4850 0.8401 0.0004 29 1 3.9506 -2.4852 0.0044 30 1 4.1623 -6.7289 -0.4087 31 1 1.7082 -6.8640 -0.4351 32 1 -0.2832 -3.6249 1.5356 33 1 -2.7387 -3.7502 1.5108 34 1 -4.7535 -3.8751 1.4896 35 1 -7.2139 -4.4646 0.7875 36 1 -7.1022 -5.9757 -1.4079 37 1 -2.5873 -6.1746 -2.0095 38 1 -0.1321 -6.0460 -1.9982 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241393143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:02 Heat of formation + Delta-G solvation = 48.367738 kcal Electronic energy + Delta-G solvation = -25625.096445 eV Core-core repulsion = 21735.096186 eV Total energy + Delta-G solvation = -3890.000259 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.87577 -42.43521 -41.09500 -39.68190 -38.01990 -34.79041 -34.32742 -32.30183 -31.98171 -30.95490 -30.90916 -28.72401 -27.39609 -24.81522 -24.25887 -23.36382 -22.78095 -21.44736 -21.38982 -20.10637 -19.34448 -19.14245 -17.62964 -17.12359 -16.96084 -16.63491 -16.23252 -16.20189 -15.98705 -15.84820 -15.47331 -15.36836 -15.03767 -14.79108 -14.59406 -14.39973 -14.13180 -13.85470 -13.64222 -13.59500 -13.40353 -12.96962 -12.55927 -12.46516 -12.30696 -12.17271 -12.06928 -11.67326 -11.48229 -11.26105 -10.84997 -10.16421 -9.99644 -9.75058 -9.28897 -8.64845 -8.51341 -6.18511 -0.32724 0.33249 0.40034 0.53388 1.25388 1.34255 1.40237 1.42866 1.50295 1.87769 2.12497 2.58324 2.83697 3.04491 3.24248 3.45814 3.53800 3.75404 3.82125 3.96020 4.01128 4.03385 4.21010 4.34670 4.39633 4.43749 4.59569 4.74299 4.76342 4.82909 4.99286 5.01660 5.06162 5.09697 5.26369 5.26404 5.30066 5.42298 5.43276 5.68250 5.71723 5.80089 5.94839 6.03178 6.21365 6.67070 6.92762 7.65864 8.68632 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.004035 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.523438 B = 6937.886697 C = 9278.219722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.419 4.419 8 H 0.098 0.902 9 O -0.193 6.193 10 C 0.158 3.842 11 C -0.285 4.285 12 C 0.137 3.863 13 F -0.146 7.146 14 C -0.219 4.219 15 C -0.022 4.022 16 C -0.142 4.142 17 C -0.036 4.036 18 C -0.071 4.071 19 C -0.137 4.137 20 C 0.138 3.862 21 N -0.333 5.333 22 C 0.037 3.963 23 C -0.263 4.263 24 C 0.052 3.948 25 N -0.332 5.332 26 C -0.126 4.126 27 C -0.086 4.086 28 H 0.273 0.727 29 H 0.127 0.873 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.194 0.806 35 H 0.184 0.816 36 H 0.223 0.777 37 H 0.142 0.858 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -10.785 0.895 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.115 0.885 9 O -0.098 6.098 10 C 0.105 3.895 11 C -0.306 4.306 12 C 0.117 3.883 13 F -0.125 7.125 14 C -0.238 4.238 15 C -0.039 4.039 16 C -0.144 4.144 17 C -0.037 4.037 18 C -0.089 4.089 19 C -0.157 4.157 20 C 0.046 3.954 21 N -0.108 5.108 22 C -0.105 4.105 23 C -0.291 4.291 24 C -0.134 4.134 25 N -0.151 5.151 26 C -0.145 4.145 27 C -0.104 4.104 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.180 0.820 31 H 0.186 0.814 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.211 0.789 35 H 0.201 0.799 36 H 0.240 0.760 37 H 0.160 0.840 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.734 -11.099 0.105 12.493 hybrid contribution 0.232 1.777 0.707 1.927 sum -5.502 -9.322 0.812 10.855 Atomic orbital electron populations 1.70171 1.07584 1.28712 1.47215 1.26363 0.96721 1.02121 0.95532 0.84660 0.78279 0.75561 0.78613 1.17979 1.19539 1.19158 1.21796 0.92403 0.81489 1.53780 0.88515 1.83992 1.34722 1.11865 1.79178 1.19475 0.89651 0.88029 0.92341 1.21026 0.94056 0.99015 1.16455 1.17660 0.76049 0.94574 0.99986 1.91432 1.29838 1.97387 1.93858 1.20973 0.95310 0.96086 1.11468 1.21035 0.92138 0.97118 0.93656 1.18201 0.92211 0.90851 1.13101 1.18703 0.91688 0.97951 0.95356 1.20974 0.92950 0.96605 0.98413 1.20737 0.94493 1.01062 0.99412 1.17679 0.78913 1.00785 0.98048 1.45973 1.04053 1.39487 1.21319 1.23257 0.90970 0.99598 0.96719 1.21994 0.97577 1.08079 1.01437 1.24743 0.94742 0.97309 0.96616 1.77368 1.04335 1.19390 1.14054 1.20821 0.93738 1.01346 0.98625 1.21260 0.93198 0.98361 0.97574 0.91785 0.85520 0.82019 0.81387 0.86981 0.84096 0.78886 0.79915 0.76032 0.84006 0.82734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.88 13.67 21.61 0.30 -51.58 16 2 C -0.01 -0.39 5.49 84.83 0.47 0.08 16 3 Si 1.01 41.43 29.55 68.60 2.03 43.46 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.42 -23.03 9.49 67.91 0.64 -22.38 16 8 H 0.10 5.02 5.21 -2.91 -0.02 5.00 16 9 O -0.19 -10.58 8.12 -21.63 -0.18 -10.76 16 10 C 0.16 7.29 6.56 22.81 0.15 7.44 16 11 C -0.29 -12.26 9.14 22.40 0.20 -12.05 16 12 C 0.14 4.94 7.30 22.40 0.16 5.10 16 13 F -0.15 -5.09 17.26 44.97 0.78 -4.32 16 14 C -0.22 -6.47 10.01 22.31 0.22 -6.24 16 15 C -0.02 -0.64 9.49 22.47 0.21 -0.43 16 16 C -0.14 -5.44 5.49 -19.93 -0.11 -5.55 16 17 C -0.04 -1.35 5.28 -20.03 -0.11 -1.46 16 18 C -0.07 -2.76 8.78 22.48 0.20 -2.56 16 19 C -0.14 -4.72 9.44 22.35 0.21 -4.51 16 20 C 0.14 4.64 6.69 38.16 0.26 4.90 16 21 N -0.33 -10.31 3.80 -187.65 -0.71 -11.02 16 22 C 0.04 0.92 10.79 83.50 0.90 1.82 16 23 C -0.26 -5.34 10.81 22.00 0.24 -5.10 16 24 C 0.05 1.13 12.03 85.24 1.03 2.16 16 25 N -0.33 -9.83 11.86 -56.96 -0.68 -10.51 16 26 C -0.13 -4.03 9.64 22.35 0.22 -3.81 16 27 C -0.09 -2.72 9.49 22.47 0.21 -2.50 16 28 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.13 5.68 5.64 -2.91 -0.02 5.66 16 30 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.17 3.60 8.03 -2.91 -0.02 3.58 16 32 H 0.11 4.81 7.70 -2.91 -0.02 4.78 16 33 H 0.14 4.21 6.72 -2.91 -0.02 4.19 16 34 H 0.19 3.85 7.03 -2.91 -0.02 3.83 16 35 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.22 2.82 8.06 -2.91 -0.02 2.79 16 37 H 0.14 4.21 7.68 -2.91 -0.02 4.18 16 38 H 0.16 3.96 8.03 -2.91 -0.02 3.94 16 Total: -1.00 -69.07 340.01 7.76 -61.32 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 1.12 Total: 28.53 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 5.11 Total: -45.12 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.09 Total: -73.11 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.18 Total: -10.76 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.78 Total: -4.32 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -69.07 7.76 -61.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241393143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.684 kcal (2) G-P(sol) polarization free energy of solvation -69.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds