Wall clock time and date at job start Tue Mar 31 2020 14:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30389 * 126.18763 * 2 1 4 4 N 1.28665 * 109.52248 * 179.97438 * 3 2 1 5 5 C 1.31232 * 109.24961 * 0.02562 * 4 3 2 6 6 C 1.47865 * 126.37513 * 180.02562 * 5 4 3 7 7 C 1.39701 * 120.06985 * 179.70243 * 6 5 4 8 8 C 1.38091 * 120.13937 * 179.69953 * 7 6 5 9 9 C 1.38069 * 120.29911 * 0.59763 * 8 7 6 10 10 C 1.39660 * 120.14416 * 359.67864 * 9 8 7 11 11 C 1.48021 * 120.07435 * 180.02562 * 10 9 8 12 12 C 1.40006 * 119.86196 * 179.74514 * 11 10 9 13 13 C 1.36203 * 120.18679 * 179.75599 * 12 11 10 14 14 C 1.40934 * 119.89883 * 0.52012 * 13 12 11 15 15 C 1.40953 * 120.13734 * 179.75717 * 14 13 12 16 16 H 1.08001 * 119.99818 * 150.01026 * 15 14 13 17 17 C 1.39997 * 120.00341 * 330.01463 * 15 14 13 18 18 N 1.30811 * 120.00443 * 161.79379 * 17 15 14 19 19 Si 1.86804 * 119.99857 * 341.79521 * 17 15 14 20 20 H 1.48504 * 109.47189 * 95.40896 * 19 17 15 21 21 H 1.48497 * 109.47229 * 215.40926 * 19 17 15 22 22 H 1.48505 * 109.47243 * 335.41365 * 19 17 15 23 23 C 1.41166 * 119.72707 * 359.73875 * 14 13 12 24 24 F 1.35106 * 120.09645 * 180.02562 * 23 14 13 25 25 C 1.36573 * 119.81081 * 359.97438 * 23 14 13 26 26 C 1.39269 * 120.07542 * 359.97438 * 6 5 4 27 27 O 1.34404 * 126.18686 * 179.69329 * 2 1 3 28 28 H 1.08996 * 109.47093 * 90.02001 * 1 2 3 29 29 H 1.08999 * 109.47344 * 210.02599 * 1 2 3 30 30 H 1.09002 * 109.46945 * 330.02585 * 1 2 3 31 31 H 1.07991 * 119.92744 * 359.97438 * 7 6 5 32 32 H 1.08008 * 119.85094 * 180.30298 * 8 7 6 33 33 H 1.08002 * 119.92998 * 179.70368 * 9 8 7 34 34 H 1.07997 * 119.90742 * 0.02893 * 12 11 10 35 35 H 1.08001 * 120.05076 * 180.25572 * 13 12 11 36 36 H 0.97003 * 120.00178 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.95217 * 179.97438 * 25 23 14 38 38 H 1.07999 * 120.14755 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0524 0.0000 4 7 3.5095 0.6834 0.0005 5 6 3.5686 -0.6276 0.0004 6 6 4.7975 -1.4500 0.0014 7 6 4.7069 -2.8440 0.0073 8 6 5.8535 -3.6135 0.0020 9 6 7.0962 -3.0117 0.0032 10 6 7.2010 -1.6190 0.0031 11 6 8.5340 -0.9755 0.0038 12 6 8.6340 0.4210 -0.0017 13 6 9.8572 1.0200 0.0039 14 6 11.0255 0.2318 0.0043 15 6 12.2939 0.8466 0.0050 16 1 13.1329 0.3530 0.4728 17 6 12.4662 2.0969 -0.6006 18 7 13.5111 2.8273 -0.3077 19 14 11.2037 2.7225 -1.8272 20 1 10.2287 3.5995 -1.1303 21 1 11.8901 3.4950 -2.8936 22 1 10.4885 1.5705 -2.4326 23 6 10.9202 -1.1759 0.0044 24 9 12.0353 -1.9387 0.0053 25 6 9.6878 -1.7645 0.0046 26 6 6.0478 -0.8365 0.0021 27 8 2.3005 -1.0848 0.0058 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 3.7379 -3.3209 0.0116 32 1 5.7780 -4.6909 0.0016 33 1 7.9891 -3.6192 0.0038 34 1 7.7387 1.0249 -0.0061 35 1 9.9317 2.0975 0.0038 36 1 13.6307 3.6935 -0.7276 37 1 9.6046 -2.8413 0.0043 38 1 6.1234 0.2408 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241934691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:56 Heat of formation + Delta-G solvation = 30.642094 kcal Electronic energy + Delta-G solvation = -25176.861662 eV Core-core repulsion = 21286.092762 eV Total energy + Delta-G solvation = -3890.768900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.52299 -44.22855 -39.33583 -37.53539 -36.26953 -34.26850 -33.50247 -32.07120 -31.34225 -29.85194 -29.27736 -27.92142 -25.41718 -24.43390 -23.02501 -22.43991 -22.07231 -20.87134 -20.21400 -17.83832 -17.82510 -17.53877 -16.69194 -16.10413 -15.66363 -15.61870 -14.92200 -14.86297 -14.34748 -14.21564 -14.09038 -13.72927 -13.71048 -13.39919 -13.15383 -12.93579 -12.92002 -12.56139 -12.49980 -12.15347 -11.97543 -11.83617 -11.49980 -11.23115 -11.14489 -10.94812 -10.90359 -10.52010 -10.20140 -10.12696 -9.90586 -9.45410 -8.95981 -8.54156 -7.90572 -7.45371 -7.30570 -4.73400 0.45820 1.21701 1.62122 2.04693 2.28026 2.40150 2.57980 2.95694 3.06144 3.15122 3.63737 3.74809 3.85098 4.19830 4.35162 4.62391 4.89349 4.95613 4.97055 5.07081 5.08771 5.17791 5.25699 5.26350 5.48464 5.53108 5.55922 5.64246 5.68163 5.86815 6.04153 6.20162 6.28966 6.42525 6.46277 6.53402 6.70246 6.79705 6.93337 7.15131 7.24140 7.46378 7.53457 7.72330 7.99724 8.18427 8.28561 8.40294 9.68397 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.003114 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.324471 B = 8988.475160 C =10499.914710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.149 3.851 3 N -0.285 5.285 4 N -0.280 5.280 5 C 0.224 3.776 6 C -0.024 4.024 7 C -0.121 4.121 8 C -0.109 4.109 9 C -0.116 4.116 10 C 0.022 3.978 11 C -0.193 4.193 12 C -0.050 4.050 13 C -0.227 4.227 14 C 0.071 3.929 15 C -0.409 4.409 16 H 0.100 0.900 17 C 0.080 3.920 18 N -0.778 5.778 19 Si 0.915 3.085 20 H -0.263 1.263 21 H -0.285 1.285 22 H -0.239 1.239 23 C -0.013 4.013 24 F -0.156 7.156 25 C -0.083 4.083 26 C -0.087 4.087 27 O -0.223 6.223 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.294 0.706 37 H 0.112 0.888 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.344 -7.262 -0.766 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.061 4.061 3 N -0.132 5.132 4 N -0.126 5.126 5 C 0.017 3.983 6 C -0.026 4.026 7 C -0.141 4.141 8 C -0.127 4.127 9 C -0.134 4.134 10 C 0.021 3.979 11 C -0.194 4.194 12 C -0.069 4.069 13 C -0.246 4.246 14 C 0.067 3.933 15 C -0.435 4.435 16 H 0.118 0.882 17 C -0.143 4.143 18 N -0.399 5.399 19 Si 0.739 3.261 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.162 1.162 23 C -0.033 4.033 24 F -0.135 7.135 25 C -0.103 4.103 26 C -0.106 4.106 27 O -0.103 6.103 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.130 0.870 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.714 -5.786 -0.760 19.603 hybrid contribution -0.554 -0.884 -0.432 1.130 sum -19.269 -6.670 -1.192 20.425 Atomic orbital electron populations 1.20321 0.80214 1.05601 1.05136 1.27987 0.97752 0.79658 1.00686 1.74398 0.96222 1.25628 1.16995 1.74777 1.11612 1.08432 1.17806 1.25698 0.83383 0.90441 0.98817 1.17086 0.86159 0.91398 1.07914 1.20990 0.99074 0.91586 1.02449 1.20881 0.91812 0.99637 1.00360 1.21470 0.97691 0.94292 0.99983 1.18736 0.92326 0.92333 0.94459 1.17620 0.89599 0.92435 1.19753 1.20534 0.96819 0.93314 0.96205 1.20540 0.91857 0.98553 1.13613 1.17801 0.94105 0.90157 0.91283 1.19634 0.95748 1.00332 1.27753 0.88177 1.26358 0.96340 0.94969 0.96621 1.69661 1.26572 1.10006 1.33695 0.86227 0.79870 0.80395 0.79581 1.18827 1.21152 1.16195 1.17275 0.81504 0.88731 1.15779 1.91330 1.51802 1.75258 1.95129 1.20368 0.91009 0.98517 1.00363 1.21220 0.89331 1.00860 0.99234 1.84809 1.17301 1.38020 1.70195 0.88408 0.88981 0.87581 0.85995 0.85576 0.85316 0.87533 0.87094 0.89558 0.87042 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.30 10.51 36.01 0.38 0.08 16 2 C 0.15 1.73 8.47 -12.89 -0.11 1.62 16 3 N -0.28 -4.29 12.22 32.58 0.40 -3.89 16 4 N -0.28 -4.70 11.91 32.07 0.38 -4.32 16 5 C 0.22 3.40 7.99 -13.87 -0.11 3.29 16 6 C -0.02 -0.35 5.87 -105.03 -0.62 -0.97 16 7 C -0.12 -1.53 9.72 -39.09 -0.38 -1.91 16 8 C -0.11 -1.31 10.02 -39.70 -0.40 -1.71 16 9 C -0.12 -1.64 9.42 -39.11 -0.37 -2.01 16 10 C 0.02 0.36 5.87 -104.94 -0.62 -0.25 16 11 C -0.19 -3.76 5.90 -104.65 -0.62 -4.38 16 12 C -0.05 -1.03 9.35 -39.65 -0.37 -1.40 16 13 C -0.23 -5.11 7.10 -39.29 -0.28 -5.38 16 14 C 0.07 1.72 5.11 -106.74 -0.55 1.17 16 15 C -0.41 -10.53 9.24 -37.90 -0.35 -10.88 16 16 H 0.10 2.74 7.97 -52.49 -0.42 2.32 16 17 C 0.08 1.97 5.40 -17.33 -0.09 1.88 16 18 N -0.78 -19.30 13.93 55.55 0.77 -18.52 16 19 Si 0.91 19.44 24.51 -169.99 -4.17 15.27 16 20 H -0.26 -5.37 6.71 56.52 0.38 -4.99 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.24 -5.24 6.87 56.52 0.39 -4.85 16 23 C -0.01 -0.30 7.26 -39.07 -0.28 -0.58 16 24 F -0.16 -3.64 16.76 2.25 0.04 -3.60 16 25 C -0.08 -1.68 9.33 -39.61 -0.37 -2.05 16 26 C -0.09 -1.41 9.07 -38.78 -0.35 -1.77 16 27 O -0.22 -2.91 10.66 4.06 0.04 -2.87 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.12 1.28 7.92 -52.49 -0.42 0.86 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.13 1.66 6.16 -52.49 -0.32 1.34 16 34 H 0.11 1.94 6.17 -52.49 -0.32 1.61 16 35 H 0.11 2.45 4.73 -52.49 -0.25 2.21 16 36 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 37 H 0.11 1.92 6.16 -52.49 -0.32 1.59 16 38 H 0.14 2.29 5.98 -52.49 -0.31 1.98 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -28.53 332.17 -6.24 -34.77 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.23 Total: 3.41 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -5.48 Total: -25.26 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 1.55 Total: -26.73 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.17 Total: 15.27 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.53 -6.24 -34.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241934691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.411 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds