Wall clock time and date at job start Tue Mar 31 2020 14:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30389 * 126.18763 * 2 1 4 4 N 1.28665 * 109.52248 * 179.97438 * 3 2 1 5 5 C 1.31232 * 109.24961 * 0.02562 * 4 3 2 6 6 C 1.47865 * 126.37513 * 180.02562 * 5 4 3 7 7 C 1.39701 * 120.06985 * 179.70243 * 6 5 4 8 8 C 1.38091 * 120.13937 * 179.69953 * 7 6 5 9 9 C 1.38069 * 120.29911 * 0.59763 * 8 7 6 10 10 C 1.39660 * 120.14416 * 359.67864 * 9 8 7 11 11 C 1.48021 * 120.07435 * 180.02562 * 10 9 8 12 12 C 1.40006 * 119.86196 * 179.74514 * 11 10 9 13 13 C 1.36203 * 120.18679 * 179.75599 * 12 11 10 14 14 C 1.40934 * 119.89883 * 0.52012 * 13 12 11 15 15 C 1.40953 * 120.13734 * 179.75717 * 14 13 12 16 16 H 1.08001 * 119.99818 * 150.01026 * 15 14 13 17 17 C 1.39997 * 120.00341 * 330.01463 * 15 14 13 18 18 N 1.30811 * 120.00443 * 161.79379 * 17 15 14 19 19 Si 1.86804 * 119.99857 * 341.79521 * 17 15 14 20 20 H 1.48504 * 109.47189 * 95.40896 * 19 17 15 21 21 H 1.48497 * 109.47229 * 215.40926 * 19 17 15 22 22 H 1.48505 * 109.47243 * 335.41365 * 19 17 15 23 23 C 1.41166 * 119.72707 * 359.73875 * 14 13 12 24 24 F 1.35106 * 120.09645 * 180.02562 * 23 14 13 25 25 C 1.36573 * 119.81081 * 359.97438 * 23 14 13 26 26 C 1.39269 * 120.07542 * 359.97438 * 6 5 4 27 27 O 1.34404 * 126.18686 * 179.69329 * 2 1 3 28 28 H 1.08996 * 109.47093 * 90.02001 * 1 2 3 29 29 H 1.08999 * 109.47344 * 210.02599 * 1 2 3 30 30 H 1.09002 * 109.46945 * 330.02585 * 1 2 3 31 31 H 1.07991 * 119.92744 * 359.97438 * 7 6 5 32 32 H 1.08008 * 119.85094 * 180.30298 * 8 7 6 33 33 H 1.08002 * 119.92998 * 179.70368 * 9 8 7 34 34 H 1.07997 * 119.90742 * 0.02893 * 12 11 10 35 35 H 1.08001 * 120.05076 * 180.25572 * 13 12 11 36 36 H 0.97003 * 120.00178 * 179.97438 * 18 17 15 37 37 H 1.08001 * 119.95217 * 179.97438 * 25 23 14 38 38 H 1.07999 * 120.14755 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0524 0.0000 4 7 3.5095 0.6834 0.0005 5 6 3.5686 -0.6276 0.0004 6 6 4.7975 -1.4500 0.0014 7 6 4.7069 -2.8440 0.0073 8 6 5.8535 -3.6135 0.0020 9 6 7.0962 -3.0117 0.0032 10 6 7.2010 -1.6190 0.0031 11 6 8.5340 -0.9755 0.0038 12 6 8.6340 0.4210 -0.0017 13 6 9.8572 1.0200 0.0039 14 6 11.0255 0.2318 0.0043 15 6 12.2939 0.8466 0.0050 16 1 13.1329 0.3530 0.4728 17 6 12.4662 2.0969 -0.6006 18 7 13.5111 2.8273 -0.3077 19 14 11.2037 2.7225 -1.8272 20 1 10.2287 3.5995 -1.1303 21 1 11.8901 3.4950 -2.8936 22 1 10.4885 1.5705 -2.4326 23 6 10.9202 -1.1759 0.0044 24 9 12.0353 -1.9387 0.0053 25 6 9.6878 -1.7645 0.0046 26 6 6.0478 -0.8365 0.0021 27 8 2.3005 -1.0848 0.0058 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 3.7379 -3.3209 0.0116 32 1 5.7780 -4.6909 0.0016 33 1 7.9891 -3.6192 0.0038 34 1 7.7387 1.0249 -0.0061 35 1 9.9317 2.0975 0.0038 36 1 13.6307 3.6935 -0.7276 37 1 9.6046 -2.8413 0.0043 38 1 6.1234 0.2408 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241934691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:55 Heat of formation + Delta-G solvation = 11.528512 kcal Electronic energy + Delta-G solvation = -25177.690489 eV Core-core repulsion = 21286.092762 eV Total energy + Delta-G solvation = -3891.597727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.34264 -45.24788 -40.64398 -39.09370 -37.30970 -35.92855 -34.55966 -33.48565 -32.35315 -31.39446 -30.82155 -28.81819 -27.03832 -25.57142 -24.25690 -23.81794 -23.28874 -22.18226 -21.71802 -19.60979 -19.08040 -18.55238 -17.90171 -17.43131 -17.27695 -17.04209 -16.37353 -16.15211 -15.89984 -15.69349 -15.38875 -15.00257 -14.80454 -14.59547 -14.38385 -14.06659 -13.94714 -13.84237 -13.60531 -13.56270 -13.43485 -13.04856 -12.96098 -12.75459 -12.51508 -12.33900 -12.16721 -11.95003 -11.91698 -11.61090 -11.26915 -11.07616 -10.36058 -9.67188 -9.58211 -9.08154 -9.02691 -6.59747 -0.60260 -0.09958 0.60585 0.64020 0.89041 1.08987 1.22816 1.33654 1.40396 1.45777 2.03295 2.37699 2.73481 2.86348 3.32983 3.34454 3.58566 3.79985 3.85410 3.96256 4.07810 4.14281 4.22944 4.29911 4.34205 4.38311 4.51442 4.57464 4.64064 4.71207 4.81149 4.84565 4.97932 5.05018 5.08738 5.24897 5.32068 5.38076 5.46288 5.53482 5.72058 5.87921 5.91962 5.95000 6.16932 6.48192 6.60074 7.15379 7.98732 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016377 B = 0.003114 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.324471 B = 8988.475160 C =10499.914710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.172 3.828 3 N -0.329 5.329 4 N -0.315 5.315 5 C 0.213 3.787 6 C -0.036 4.036 7 C -0.096 4.096 8 C -0.099 4.099 9 C -0.104 4.104 10 C -0.012 4.012 11 C -0.161 4.161 12 C -0.063 4.063 13 C -0.230 4.230 14 C 0.054 3.946 15 C -0.462 4.462 16 H 0.060 0.940 17 C 0.051 3.949 18 N -0.825 5.825 19 Si 0.962 3.038 20 H -0.250 1.250 21 H -0.270 1.270 22 H -0.251 1.251 23 C -0.037 4.037 24 F -0.164 7.164 25 C -0.082 4.082 26 C -0.091 4.091 27 O -0.220 6.220 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.170 0.830 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.301 0.699 37 H 0.147 0.853 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.824 -10.208 -1.302 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.039 4.039 3 N -0.175 5.175 4 N -0.161 5.161 5 C 0.005 3.995 6 C -0.038 4.038 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.123 4.123 10 C -0.012 4.012 11 C -0.162 4.162 12 C -0.081 4.081 13 C -0.249 4.249 14 C 0.050 3.950 15 C -0.490 4.490 16 H 0.078 0.922 17 C -0.167 4.167 18 N -0.449 5.449 19 Si 0.784 3.216 20 H -0.174 1.174 21 H -0.196 1.196 22 H -0.175 1.175 23 C -0.057 4.057 24 F -0.143 7.143 25 C -0.100 4.100 26 C -0.110 4.110 27 O -0.101 6.101 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.170 0.830 32 H 0.188 0.812 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.165 0.835 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.209 -8.719 -1.288 25.763 hybrid contribution 0.530 -0.339 -0.198 0.660 sum -23.679 -9.057 -1.486 25.395 Atomic orbital electron populations 1.20776 0.75826 1.07558 1.07159 1.29223 0.99477 0.78466 0.96698 1.74342 0.96139 1.27257 1.19794 1.74695 1.12975 1.09635 1.18799 1.25688 0.84245 0.90168 0.99432 1.17190 0.85490 0.92527 1.08591 1.21451 1.00893 0.90470 0.98717 1.21328 0.90290 1.01746 0.98282 1.21762 0.99621 0.93042 0.97851 1.18616 0.90668 0.93753 0.98182 1.18056 0.91164 0.92179 1.14826 1.20844 0.96769 0.94384 0.96119 1.20653 0.92130 0.98675 1.13441 1.17965 0.94073 0.91136 0.91811 1.19427 0.95534 1.02066 1.31962 0.92203 1.26916 0.97812 0.94642 0.97330 1.69677 1.28432 1.11002 1.35747 0.85524 0.78258 0.79684 0.78138 1.17448 1.19602 1.17459 1.17635 0.82464 0.88617 1.16941 1.91298 1.52496 1.75227 1.95302 1.20688 0.89687 1.00453 0.99180 1.21150 0.90118 1.00434 0.99335 1.84820 1.16606 1.38310 1.70343 0.86053 0.86304 0.86249 0.82988 0.81245 0.83676 0.85382 0.87134 0.88756 0.83508 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 71.24 0.75 0.39 16 2 C 0.17 3.45 8.47 88.32 0.75 4.20 16 3 N -0.33 -9.45 12.22 -165.33 -2.02 -11.47 16 4 N -0.31 -10.28 11.91 -166.30 -1.98 -12.26 16 5 C 0.21 5.97 7.99 87.33 0.70 6.67 16 6 C -0.04 -0.95 5.87 -20.13 -0.12 -1.07 16 7 C -0.10 -1.88 9.72 22.59 0.22 -1.66 16 8 C -0.10 -1.75 10.02 22.19 0.22 -1.53 16 9 C -0.10 -2.45 9.42 22.57 0.21 -2.23 16 10 C -0.01 -0.37 5.87 -20.07 -0.12 -0.49 16 11 C -0.16 -6.02 5.90 -19.88 -0.12 -6.13 16 12 C -0.06 -2.55 9.35 22.22 0.21 -2.34 16 13 C -0.23 -10.62 7.10 22.46 0.16 -10.46 16 14 C 0.05 2.74 5.11 -21.23 -0.11 2.63 16 15 C -0.46 -25.91 9.24 23.36 0.22 -25.70 16 16 H 0.06 3.67 7.97 -2.91 -0.02 3.65 16 17 C 0.05 2.68 5.40 85.27 0.46 3.14 16 18 N -0.82 -43.95 13.93 21.84 0.30 -43.64 16 19 Si 0.96 41.53 24.51 68.60 1.68 43.22 16 20 H -0.25 -10.09 6.71 99.48 0.67 -9.42 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 22 H -0.25 -11.14 6.87 99.48 0.68 -10.46 16 23 C -0.04 -1.74 7.26 22.60 0.16 -1.57 16 24 F -0.16 -7.97 16.76 44.97 0.75 -7.22 16 25 C -0.08 -3.16 9.33 22.25 0.21 -2.96 16 26 C -0.09 -2.75 9.07 22.79 0.21 -2.54 16 27 O -0.22 -4.99 10.66 -8.38 -0.09 -5.08 16 28 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.15 2.15 7.92 -2.92 -0.02 2.13 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.15 2.94 6.16 -2.91 -0.02 2.92 16 34 H 0.13 4.58 6.17 -2.91 -0.02 4.56 16 35 H 0.11 5.03 4.73 -2.91 -0.01 5.02 16 36 H 0.30 14.23 8.30 -92.71 -0.77 13.46 16 37 H 0.15 4.57 6.16 -2.91 -0.02 4.55 16 38 H 0.13 4.05 5.98 -2.91 -0.02 4.03 16 Total: -1.00 -68.86 332.17 3.73 -65.13 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.08 Total: 12.98 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.01 Total: -41.65 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -3.70 Total: -67.37 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.09 Total: -5.08 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 0.75 Total: -7.22 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.68 Total: 43.22 kcal Total: -68.86 3.73 -65.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241934691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.656 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds