Wall clock time and date at job start Tue Mar 31 2020 14:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30380 * 126.18874 * 2 1 4 4 N 1.28665 * 109.52238 * 179.97438 * 3 2 1 5 5 C 1.31226 * 109.25011 * 0.02562 * 4 3 2 6 6 C 1.47864 * 126.37711 * 180.02562 * 5 4 3 7 7 C 1.39708 * 120.07235 * 179.70379 * 6 5 4 8 8 C 1.38088 * 120.15347 * 179.69521 * 7 6 5 9 9 C 1.38065 * 120.30562 * 0.60152 * 8 7 6 10 10 C 1.39712 * 120.13556 * 359.67592 * 9 8 7 11 11 C 1.47907 * 120.07745 * 180.02562 * 10 9 8 12 12 C 1.39037 * 120.31687 * 129.74262 * 11 10 9 13 13 C 1.38404 * 119.95899 * 179.77269 * 12 11 10 14 14 F 1.35103 * 119.70047 * 180.25619 * 13 12 11 15 15 C 1.39211 * 120.60745 * 0.50560 * 13 12 11 16 16 C 1.36359 * 120.64917 * 359.75033 * 15 13 12 17 17 C 1.40784 * 120.01537 * 359.97438 * 16 15 13 18 18 C 1.40823 * 120.30101 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00625 * 152.97053 * 18 17 16 20 20 C 1.40049 * 119.99741 * 332.96890 * 18 17 16 21 21 N 1.30796 * 119.99857 * 344.35943 * 20 18 17 22 22 Si 1.86799 * 119.99957 * 164.36363 * 20 18 17 23 23 H 1.48502 * 109.47282 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47410 * 119.99698 * 22 20 18 25 25 H 1.48503 * 109.47068 * 239.99992 * 22 20 18 26 26 C 1.39259 * 120.07291 * 359.97270 * 6 5 4 27 27 O 1.34411 * 126.18398 * 179.69188 * 2 1 3 28 28 H 1.08997 * 109.47454 * 90.01780 * 1 2 3 29 29 H 1.08998 * 109.47121 * 210.02490 * 1 2 3 30 30 H 1.08997 * 109.46840 * 330.02122 * 1 2 3 31 31 H 1.08001 * 119.92015 * 359.97058 * 7 6 5 32 32 H 1.08006 * 119.84984 * 180.27501 * 8 7 6 33 33 H 1.07995 * 119.93274 * 179.69314 * 9 8 7 34 34 H 1.07994 * 120.02125 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.67471 * 179.76670 * 15 13 12 36 36 H 1.07995 * 119.99198 * 179.97438 * 16 15 13 37 37 H 0.97005 * 119.99833 * 179.97438 * 21 20 18 38 38 H 1.08007 * 120.14740 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0523 0.0000 4 7 3.5095 0.6833 0.0005 5 6 3.5686 -0.6277 0.0004 6 6 4.7974 -1.4501 0.0014 7 6 4.7068 -2.8442 0.0073 8 6 5.8532 -3.6139 0.0019 9 6 7.0961 -3.0126 0.0031 10 6 7.2013 -1.6195 0.0030 11 6 8.5334 -0.9767 0.0038 12 6 8.8325 0.0193 -0.9190 13 6 10.0798 0.6192 -0.9086 14 9 10.3631 1.5901 -1.8044 15 6 11.0469 0.2276 0.0130 16 6 10.7819 -0.7502 0.9256 17 6 9.5201 -1.3743 0.9428 18 6 9.2398 -2.3845 1.8830 19 1 8.2229 -2.5571 2.2034 20 6 10.2797 -3.1654 2.4028 21 7 11.4461 -3.1786 1.8112 22 14 10.0008 -4.1883 3.9408 23 1 8.6059 -4.0000 4.4143 24 1 10.2290 -5.6222 3.6298 25 1 10.9457 -3.7552 5.0014 26 6 6.0477 -0.8367 0.0021 27 8 2.3006 -1.0849 0.0058 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 3.7377 -3.3210 0.0116 32 1 5.7774 -4.6913 0.0020 33 1 7.9888 -3.6204 0.0039 34 1 8.0908 0.3276 -1.6408 35 1 12.0165 0.7032 0.0052 36 1 11.5402 -1.0459 1.6355 37 1 12.1665 -3.7192 2.1714 38 1 6.1233 0.2407 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241935924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:25 Heat of formation + Delta-G solvation = 26.565662 kcal Electronic energy + Delta-G solvation = -25592.060907 eV Core-core repulsion = 21701.115240 eV Total energy + Delta-G solvation = -3890.945667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.54641 -44.08154 -39.08250 -37.25223 -36.12311 -33.84543 -33.43680 -31.89791 -31.04685 -29.60200 -28.46572 -27.75034 -25.29126 -24.16737 -23.10473 -22.16989 -21.64003 -20.90302 -20.05399 -17.71899 -17.39573 -17.36591 -16.43129 -15.82210 -15.52948 -15.21835 -15.03016 -14.66546 -14.32617 -14.19554 -14.05249 -13.61083 -13.51682 -13.04779 -13.00796 -12.68083 -12.61623 -12.36719 -12.11541 -11.98210 -11.82947 -11.47842 -11.36385 -11.17312 -11.05833 -10.97916 -10.66630 -10.52534 -10.18431 -9.88348 -9.65983 -9.38708 -8.63919 -8.26057 -7.60645 -7.43450 -7.02361 -4.58909 0.67197 1.60660 1.82604 2.19382 2.47680 2.57394 2.78854 2.94684 2.98242 3.00709 3.73833 3.78985 4.16826 4.33522 4.35089 4.77053 4.98698 5.12387 5.20575 5.26524 5.36335 5.38357 5.39046 5.54957 5.64940 5.80806 5.85984 5.90141 5.98560 6.11857 6.25347 6.46606 6.62989 6.73826 6.76142 6.87503 6.97269 7.10256 7.23728 7.26577 7.52607 7.67770 7.77260 7.96426 8.30635 8.33072 8.56191 8.63539 9.89114 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.003901 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.412781 B = 7176.723486 C = 8958.866552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.145 3.855 3 N -0.285 5.285 4 N -0.284 5.284 5 C 0.230 3.770 6 C -0.043 4.043 7 C -0.104 4.104 8 C -0.128 4.128 9 C -0.065 4.065 10 C 0.018 3.982 11 C -0.173 4.173 12 C -0.092 4.092 13 C -0.043 4.043 14 F -0.172 7.172 15 C -0.122 4.122 16 C -0.134 4.134 17 C 0.126 3.874 18 C -0.445 4.445 19 H 0.087 0.913 20 C 0.076 3.924 21 N -0.782 5.782 22 Si 0.907 3.093 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.072 4.072 27 O -0.224 6.224 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.285 0.715 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 -2.672 -0.775 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.066 4.066 3 N -0.133 5.133 4 N -0.130 5.130 5 C 0.023 3.977 6 C -0.045 4.045 7 C -0.124 4.124 8 C -0.146 4.146 9 C -0.083 4.083 10 C 0.018 3.982 11 C -0.175 4.175 12 C -0.111 4.111 13 C -0.063 4.063 14 F -0.151 7.151 15 C -0.141 4.141 16 C -0.153 4.153 17 C 0.123 3.877 18 C -0.473 4.473 19 H 0.105 0.895 20 C -0.144 4.144 21 N -0.406 5.406 22 Si 0.731 3.269 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.091 4.091 27 O -0.104 6.104 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.097 0.903 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.745 -1.487 -0.786 12.856 hybrid contribution -0.313 -1.509 0.520 1.626 sum -13.058 -2.996 -0.266 13.400 Atomic orbital electron populations 1.20293 0.80353 1.05494 1.05010 1.27935 0.97701 0.79751 1.01196 1.74369 0.96316 1.25704 1.16911 1.74776 1.11445 1.08483 1.18331 1.25750 0.83320 0.90418 0.98188 1.17079 0.86116 0.91389 1.09899 1.21031 0.99012 0.91599 1.00788 1.20954 0.91940 0.99700 1.02017 1.21753 0.97750 0.94675 0.94162 1.18629 0.91975 0.92403 0.95174 1.18226 0.94211 1.03800 1.01227 1.20543 0.94702 0.96682 0.99167 1.17179 0.96269 0.96291 0.96523 1.91300 1.94407 1.62002 1.67440 1.20528 0.97397 0.99450 0.96750 1.20945 0.98704 0.95813 0.99865 1.17547 0.90093 0.90490 0.89599 1.19642 0.95233 1.13100 1.19315 0.89466 1.25986 0.94308 0.96712 0.97392 1.69778 1.03175 1.32176 1.35472 0.86249 0.80269 0.79273 0.81126 1.18078 1.19679 1.19463 1.21357 0.89411 1.00614 0.97767 1.84809 1.17366 1.37989 1.70275 0.88530 0.89062 0.87697 0.86161 0.85628 0.84223 0.87724 0.87998 0.85407 0.90342 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.14 1.85 8.47 -12.89 -0.11 1.74 16 3 N -0.29 -4.64 12.22 32.58 0.40 -4.24 16 4 N -0.28 -5.17 11.91 32.07 0.38 -4.79 16 5 C 0.23 3.86 7.99 -13.87 -0.11 3.75 16 6 C -0.04 -0.72 5.87 -105.03 -0.62 -1.34 16 7 C -0.10 -1.54 9.72 -39.09 -0.38 -1.92 16 8 C -0.13 -1.90 10.02 -39.70 -0.40 -2.30 16 9 C -0.06 -1.16 8.00 -39.09 -0.31 -1.47 16 10 C 0.02 0.36 4.92 -104.95 -0.52 -0.16 16 11 C -0.17 -3.84 5.52 -104.24 -0.58 -4.41 16 12 C -0.09 -2.03 9.48 -39.22 -0.37 -2.40 16 13 C -0.04 -0.98 7.31 -39.16 -0.29 -1.26 16 14 F -0.17 -3.83 17.26 2.25 0.04 -3.80 16 15 C -0.12 -2.75 9.94 -39.90 -0.40 -3.15 16 16 C -0.13 -3.17 8.61 -39.30 -0.34 -3.51 16 17 C 0.13 2.98 5.55 -106.56 -0.59 2.39 16 18 C -0.44 -10.24 7.09 -37.93 -0.27 -10.51 16 19 H 0.09 1.98 6.65 -52.49 -0.35 1.63 16 20 C 0.08 1.67 5.16 -17.31 -0.09 1.58 16 21 N -0.78 -17.86 10.99 55.55 0.61 -17.25 16 22 Si 0.91 16.79 29.59 -169.99 -5.03 11.76 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 25 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 26 C -0.07 -1.33 9.17 -38.77 -0.36 -1.69 16 27 O -0.22 -3.24 10.66 4.05 0.04 -3.20 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.12 1.49 7.93 -52.49 -0.42 1.07 16 32 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 33 H 0.14 2.59 7.30 -52.49 -0.38 2.21 16 34 H 0.10 2.13 8.04 -52.49 -0.42 1.71 16 35 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.13 3.06 6.26 -52.49 -0.33 2.73 16 37 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 38 H 0.13 2.53 7.85 -52.48 -0.41 2.12 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -27.28 340.13 -7.33 -34.61 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.56 Total: 6.41 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -5.34 Total: -24.63 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 1.39 Total: -26.28 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.28 -7.33 -34.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241935924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.176 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds