Wall clock time and date at job start Tue Mar 31 2020 14:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30380 * 126.18874 * 2 1 4 4 N 1.28665 * 109.52238 * 179.97438 * 3 2 1 5 5 C 1.31226 * 109.25011 * 0.02562 * 4 3 2 6 6 C 1.47864 * 126.37711 * 180.02562 * 5 4 3 7 7 C 1.39708 * 120.07235 * 179.70379 * 6 5 4 8 8 C 1.38088 * 120.15347 * 179.69521 * 7 6 5 9 9 C 1.38065 * 120.30562 * 0.60152 * 8 7 6 10 10 C 1.39712 * 120.13556 * 359.67592 * 9 8 7 11 11 C 1.47907 * 120.07745 * 180.02562 * 10 9 8 12 12 C 1.39037 * 120.31687 * 129.74262 * 11 10 9 13 13 C 1.38404 * 119.95899 * 179.77269 * 12 11 10 14 14 F 1.35103 * 119.70047 * 180.25619 * 13 12 11 15 15 C 1.39211 * 120.60745 * 0.50560 * 13 12 11 16 16 C 1.36359 * 120.64917 * 359.75033 * 15 13 12 17 17 C 1.40784 * 120.01537 * 359.97438 * 16 15 13 18 18 C 1.40823 * 120.30101 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00625 * 152.97053 * 18 17 16 20 20 C 1.40049 * 119.99741 * 332.96890 * 18 17 16 21 21 N 1.30796 * 119.99857 * 344.35943 * 20 18 17 22 22 Si 1.86799 * 119.99957 * 164.36363 * 20 18 17 23 23 H 1.48502 * 109.47282 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47410 * 119.99698 * 22 20 18 25 25 H 1.48503 * 109.47068 * 239.99992 * 22 20 18 26 26 C 1.39259 * 120.07291 * 359.97270 * 6 5 4 27 27 O 1.34411 * 126.18398 * 179.69188 * 2 1 3 28 28 H 1.08997 * 109.47454 * 90.01780 * 1 2 3 29 29 H 1.08998 * 109.47121 * 210.02490 * 1 2 3 30 30 H 1.08997 * 109.46840 * 330.02122 * 1 2 3 31 31 H 1.08001 * 119.92015 * 359.97058 * 7 6 5 32 32 H 1.08006 * 119.84984 * 180.27501 * 8 7 6 33 33 H 1.07995 * 119.93274 * 179.69314 * 9 8 7 34 34 H 1.07994 * 120.02125 * 0.02562 * 12 11 10 35 35 H 1.08001 * 119.67471 * 179.76670 * 15 13 12 36 36 H 1.07995 * 119.99198 * 179.97438 * 16 15 13 37 37 H 0.97005 * 119.99833 * 179.97438 * 21 20 18 38 38 H 1.08007 * 120.14740 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0523 0.0000 4 7 3.5095 0.6833 0.0005 5 6 3.5686 -0.6277 0.0004 6 6 4.7974 -1.4501 0.0014 7 6 4.7068 -2.8442 0.0073 8 6 5.8532 -3.6139 0.0019 9 6 7.0961 -3.0126 0.0031 10 6 7.2013 -1.6195 0.0030 11 6 8.5334 -0.9767 0.0038 12 6 8.8325 0.0193 -0.9190 13 6 10.0798 0.6192 -0.9086 14 9 10.3631 1.5901 -1.8044 15 6 11.0469 0.2276 0.0130 16 6 10.7819 -0.7502 0.9256 17 6 9.5201 -1.3743 0.9428 18 6 9.2398 -2.3845 1.8830 19 1 8.2229 -2.5571 2.2034 20 6 10.2797 -3.1654 2.4028 21 7 11.4461 -3.1786 1.8112 22 14 10.0008 -4.1883 3.9408 23 1 8.6059 -4.0000 4.4143 24 1 10.2290 -5.6222 3.6298 25 1 10.9457 -3.7552 5.0014 26 6 6.0477 -0.8367 0.0021 27 8 2.3006 -1.0849 0.0058 28 1 -0.3634 -0.0003 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 3.7377 -3.3210 0.0116 32 1 5.7774 -4.6913 0.0020 33 1 7.9888 -3.6204 0.0039 34 1 8.0908 0.3276 -1.6408 35 1 12.0165 0.7032 0.0052 36 1 11.5402 -1.0459 1.6355 37 1 12.1665 -3.7192 2.1714 38 1 6.1233 0.2407 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241935924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:24 Heat of formation + Delta-G solvation = 10.864828 kcal Electronic energy + Delta-G solvation = -25592.741747 eV Core-core repulsion = 21701.115240 eV Total energy + Delta-G solvation = -3891.626507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.34026 -45.23171 -40.52921 -38.86407 -37.29179 -35.56031 -34.56811 -33.31816 -32.18000 -31.31556 -30.03106 -28.77766 -27.01848 -25.43920 -24.44942 -23.42898 -23.11806 -22.41556 -21.57372 -19.37037 -18.80938 -18.53541 -17.78847 -17.31583 -17.08939 -16.59849 -16.53452 -16.12774 -15.92732 -15.80203 -15.29924 -14.83781 -14.51438 -14.34394 -14.20018 -14.04456 -13.79413 -13.62419 -13.57387 -13.41418 -13.14606 -13.02710 -12.84062 -12.62128 -12.49145 -12.36057 -12.22236 -11.91608 -11.77469 -11.35331 -11.12381 -11.06676 -10.09968 -9.60337 -9.31768 -9.12355 -8.69736 -6.35295 -0.54424 0.19809 0.64738 0.77417 0.99673 1.12301 1.41788 1.42982 1.48502 1.56675 2.19515 2.60147 2.75787 2.84008 3.36515 3.55384 3.71641 3.87028 4.01209 4.09200 4.14458 4.22767 4.25754 4.36843 4.46885 4.52426 4.58344 4.60201 4.72381 4.88519 5.00052 5.05877 5.07250 5.09410 5.24642 5.29864 5.43522 5.52400 5.65935 5.73733 5.87398 5.98419 6.03269 6.21066 6.54245 6.81664 6.87521 7.17083 8.24371 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011686 B = 0.003901 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.412781 B = 7176.723486 C = 8958.866552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.170 3.830 3 N -0.328 5.328 4 N -0.317 5.317 5 C 0.218 3.782 6 C -0.045 4.045 7 C -0.086 4.086 8 C -0.113 4.113 9 C -0.073 4.073 10 C -0.007 4.007 11 C -0.173 4.173 12 C -0.099 4.099 13 C -0.061 4.061 14 F -0.171 7.171 15 C -0.125 4.125 16 C -0.154 4.154 17 C 0.102 3.898 18 C -0.457 4.457 19 H 0.087 0.913 20 C 0.043 3.957 21 N -0.809 5.809 22 Si 0.974 3.026 23 H -0.258 1.258 24 H -0.262 1.262 25 H -0.268 1.268 26 C -0.081 4.081 27 O -0.220 6.220 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.294 0.706 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.402 -4.847 -0.221 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.041 4.041 3 N -0.175 5.175 4 N -0.163 5.163 5 C 0.009 3.991 6 C -0.047 4.047 7 C -0.106 4.106 8 C -0.131 4.131 9 C -0.092 4.092 10 C -0.007 4.007 11 C -0.174 4.174 12 C -0.118 4.118 13 C -0.081 4.081 14 F -0.151 7.151 15 C -0.144 4.144 16 C -0.174 4.174 17 C 0.099 3.901 18 C -0.485 4.485 19 H 0.105 0.895 20 C -0.174 4.174 21 N -0.433 5.433 22 Si 0.795 3.205 23 H -0.181 1.181 24 H -0.186 1.186 25 H -0.193 1.193 26 C -0.101 4.101 27 O -0.101 6.101 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.821 -3.636 -0.248 16.235 hybrid contribution 0.435 -0.830 0.298 0.983 sum -15.386 -4.466 0.050 16.022 Atomic orbital electron populations 1.20774 0.75694 1.07545 1.07174 1.29247 0.99507 0.78471 0.96860 1.74318 0.96083 1.27287 1.19782 1.74704 1.12970 1.09591 1.19031 1.25608 0.84122 0.90119 0.99210 1.17158 0.85500 0.92484 1.09588 1.21412 1.00540 0.90473 0.98170 1.21306 0.90398 1.01599 0.99764 1.21718 0.98865 0.93662 0.94955 1.18553 0.90979 0.93430 0.97730 1.18542 0.95333 1.03273 1.00266 1.20745 0.94769 0.96771 0.99507 1.17334 0.96775 0.96917 0.97079 1.91288 1.94439 1.61970 1.67383 1.20669 0.98116 0.99248 0.96415 1.20930 0.98983 0.96861 1.00586 1.17880 0.90597 0.91246 0.90413 1.19748 0.95630 1.13406 1.19727 0.89523 1.26706 0.93732 0.97399 0.99599 1.69816 1.03984 1.32845 1.36669 0.85251 0.79885 0.78042 0.77338 1.18122 1.18627 1.19328 1.21171 0.90163 0.99833 0.98918 1.84821 1.16549 1.38347 1.70368 0.85997 0.86357 0.86191 0.82671 0.81721 0.85468 0.86683 0.86404 0.86255 0.89533 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.17 3.92 8.47 88.33 0.75 4.67 16 3 N -0.33 -10.45 12.22 -165.33 -2.02 -12.47 16 4 N -0.32 -11.62 11.91 -166.31 -1.98 -13.60 16 5 C 0.22 7.11 7.99 87.33 0.70 7.81 16 6 C -0.05 -1.48 5.87 -20.13 -0.12 -1.60 16 7 C -0.09 -2.28 9.72 22.59 0.22 -2.06 16 8 C -0.11 -3.02 10.02 22.19 0.22 -2.80 16 9 C -0.07 -2.57 8.00 22.59 0.18 -2.39 16 10 C -0.01 -0.28 4.92 -20.08 -0.10 -0.37 16 11 C -0.17 -7.97 5.52 -19.62 -0.11 -8.08 16 12 C -0.10 -4.55 9.48 22.50 0.21 -4.34 16 13 C -0.06 -2.90 7.31 22.54 0.16 -2.73 16 14 F -0.17 -7.82 17.26 44.97 0.78 -7.05 16 15 C -0.13 -5.88 9.94 22.07 0.22 -5.66 16 16 C -0.15 -7.62 8.61 22.45 0.19 -7.43 16 17 C 0.10 5.00 5.55 -21.12 -0.12 4.88 16 18 C -0.46 -21.50 7.09 23.34 0.17 -21.33 16 19 H 0.09 3.98 6.65 -2.91 -0.02 3.96 16 20 C 0.04 1.92 5.16 85.29 0.44 2.36 16 21 N -0.81 -37.47 10.99 21.85 0.24 -37.23 16 22 Si 0.97 33.91 29.59 68.60 2.03 35.94 16 23 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 24 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 25 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 26 C -0.08 -3.07 9.17 22.80 0.21 -2.86 16 27 O -0.22 -5.82 10.66 -8.42 -0.09 -5.91 16 28 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.16 3.05 7.93 -2.91 -0.02 3.03 16 32 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 33 H 0.13 4.76 7.30 -2.91 -0.02 4.73 16 34 H 0.12 4.90 8.04 -2.91 -0.02 4.87 16 35 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 36 H 0.12 5.99 6.26 -2.91 -0.02 5.97 16 37 H 0.29 12.25 8.30 -92.70 -0.77 11.48 16 38 H 0.12 4.72 7.85 -2.91 -0.02 4.70 16 Total: -1.00 -62.15 340.13 4.05 -58.09 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 1.12 Total: 23.90 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 3.98 Total: -41.67 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -3.76 Total: -63.30 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.09 Total: -5.91 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.78 Total: -7.05 kcal Atomic # 14 Polarization: 33.91 SS G_CDS: 2.03 Total: 35.94 kcal Total: -62.15 4.05 -58.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241935924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.958 kcal (2) G-P(sol) polarization free energy of solvation -62.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds