Wall clock time and date at job start Tue Mar 31 2020 14:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30389 * 126.18692 * 2 1 4 4 N 1.28668 * 109.52328 * 179.97438 * 3 2 1 5 5 C 1.31228 * 109.25017 * 0.02562 * 4 3 2 6 6 C 1.47864 * 126.37631 * 180.02562 * 5 4 3 7 7 C 1.39645 * 120.08348 * 179.70284 * 6 5 4 8 8 C 1.38026 * 120.09964 * 179.76900 * 7 6 5 9 9 C 1.38148 * 120.27035 * 0.50739 * 8 7 6 10 10 C 1.39413 * 120.16889 * 359.74267 * 9 8 7 11 11 C 1.48411 * 120.04839 * 179.97438 * 10 9 8 12 12 C 1.39818 * 119.96156 * 179.75167 * 11 10 9 13 13 C 1.38233 * 120.41866 * 179.72382 * 12 11 10 14 14 C 1.38066 * 120.34969 * 0.55058 * 13 12 11 15 15 F 1.35097 * 120.04158 * 179.75080 * 14 13 12 16 16 C 1.41036 * 119.91542 * 359.72232 * 14 13 12 17 17 C 1.41315 * 120.20735 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99897 * 24.62991 * 17 16 14 19 19 C 1.39915 * 120.00060 * 204.63293 * 17 16 14 20 20 N 1.30849 * 120.00223 * 17.80145 * 19 17 16 21 21 Si 1.86808 * 119.99909 * 197.80254 * 19 17 16 22 22 H 1.48496 * 109.47187 * 60.00128 * 21 19 17 23 23 H 1.48506 * 109.46910 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47108 * 299.99595 * 21 19 17 25 25 C 1.38661 * 119.96737 * 0.02562 * 11 10 9 26 26 C 1.39107 * 119.89717 * 0.02562 * 10 9 8 27 27 O 1.34410 * 126.18839 * 179.69513 * 2 1 3 28 28 H 1.08994 * 109.47224 * 90.02404 * 1 2 3 29 29 H 1.09001 * 109.46554 * 210.02461 * 1 2 3 30 30 H 1.09001 * 109.47107 * 330.01880 * 1 2 3 31 31 H 1.08004 * 119.94673 * 0.02562 * 7 6 5 32 32 H 1.07994 * 119.86340 * 180.23299 * 8 7 6 33 33 H 1.08005 * 119.91770 * 179.77014 * 9 8 7 34 34 H 1.07995 * 119.78590 * 359.97438 * 12 11 10 35 35 H 1.08000 * 119.82082 * 180.27647 * 13 12 11 36 36 H 0.96998 * 120.00648 * 180.02562 * 20 19 17 37 37 H 1.08003 * 120.16993 * 0.02744 * 25 11 10 38 38 H 1.08003 * 120.13239 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0524 0.0000 4 7 3.5095 0.6834 0.0005 5 6 3.5687 -0.6275 0.0004 6 6 4.7976 -1.4499 0.0014 7 6 4.7073 -2.8434 0.0073 8 6 5.8542 -3.6114 0.0034 9 6 7.0967 -3.0074 0.0042 10 6 7.1999 -1.6171 0.0035 11 6 8.5361 -0.9712 0.0050 12 6 8.6375 0.4233 -0.0009 13 6 9.8771 1.0349 0.0061 14 6 11.0299 0.2751 0.0076 15 9 12.2382 0.8794 0.0094 16 6 10.9444 -1.1327 0.0079 17 6 12.1204 -1.9164 0.0089 18 1 13.0410 -1.5082 0.3992 19 6 12.0921 -3.2210 -0.4959 20 7 11.1098 -3.6009 -1.2724 21 14 13.4566 -4.4205 -0.0611 22 1 13.5016 -4.6065 1.4114 23 1 13.1946 -5.7270 -0.7168 24 1 14.7578 -3.8818 -0.5322 25 6 9.6825 -1.7512 0.0065 26 6 6.0486 -0.8364 0.0026 27 8 2.3006 -1.0848 0.0058 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 3.7386 -3.3209 0.0107 32 1 5.7799 -4.6888 0.0042 33 1 7.9904 -3.6139 0.0049 34 1 7.7416 1.0264 -0.0070 35 1 9.9442 2.1128 0.0060 36 1 11.0899 -4.5055 -1.6220 37 1 9.6060 -2.8285 0.0061 38 1 6.1242 0.2410 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241936164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:28 Heat of formation + Delta-G solvation = 28.855751 kcal Electronic energy + Delta-G solvation = -25245.664220 eV Core-core repulsion = 21354.817858 eV Total energy + Delta-G solvation = -3890.846362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.32194 -44.19639 -39.28372 -37.20922 -36.23703 -34.04068 -33.52063 -31.84103 -31.25756 -29.88186 -28.13795 -27.75608 -25.56813 -24.28387 -23.18138 -22.16633 -22.12675 -20.75783 -20.00494 -17.91401 -17.50735 -17.07720 -16.58560 -16.08436 -15.73802 -15.25246 -15.07251 -14.64688 -14.25276 -14.09263 -13.89021 -13.70229 -13.59355 -13.16486 -13.06252 -12.89827 -12.70710 -12.46829 -12.01827 -11.93657 -11.77212 -11.57335 -11.45377 -11.18067 -11.10906 -10.99963 -10.86447 -10.58948 -10.12300 -10.07388 -9.58166 -9.40857 -8.90767 -8.47429 -7.73671 -7.15170 -6.91118 -4.54707 0.50507 1.29169 1.66372 2.07644 2.39877 2.61902 2.77470 2.97905 3.00912 3.08797 3.66737 3.80560 3.97453 4.22719 4.49018 4.65453 4.91895 4.98807 5.02564 5.12948 5.23423 5.28686 5.35977 5.37164 5.53910 5.57420 5.66191 5.81435 5.93521 6.01484 6.13728 6.38412 6.45424 6.53961 6.63161 6.77241 6.96847 7.03172 7.09462 7.34336 7.44438 7.73595 7.79067 7.93159 8.21409 8.35194 8.58592 8.66472 9.97536 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.002945 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.515798 B = 9506.650908 C =10850.263242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.149 3.851 3 N -0.285 5.285 4 N -0.281 5.281 5 C 0.226 3.774 6 C -0.037 4.037 7 C -0.102 4.102 8 C -0.119 4.119 9 C -0.085 4.085 10 C -0.008 4.008 11 C -0.060 4.060 12 C -0.200 4.200 13 C -0.122 4.122 14 C -0.020 4.020 15 F -0.161 7.161 16 C 0.082 3.918 17 C -0.451 4.451 18 H 0.084 0.916 19 C 0.077 3.923 20 N -0.790 5.790 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.121 4.121 26 C -0.066 4.066 27 O -0.223 6.223 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.285 0.715 37 H 0.134 0.866 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.313 -2.517 1.766 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 N -0.132 5.132 4 N -0.127 5.127 5 C 0.019 3.981 6 C -0.039 4.039 7 C -0.122 4.122 8 C -0.137 4.137 9 C -0.103 4.103 10 C -0.008 4.008 11 C -0.061 4.061 12 C -0.219 4.219 13 C -0.141 4.141 14 C -0.041 4.041 15 F -0.141 7.141 16 C 0.079 3.921 17 C -0.480 4.480 18 H 0.102 0.898 19 C -0.142 4.142 20 N -0.414 5.414 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.140 4.140 26 C -0.086 4.086 27 O -0.103 6.103 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.008 -1.435 1.615 16.154 hybrid contribution 0.353 -1.607 0.009 1.645 sum -15.656 -3.041 1.625 16.031 Atomic orbital electron populations 1.20317 0.80236 1.05574 1.05125 1.27975 0.97738 0.79665 1.00786 1.74389 0.96230 1.25635 1.16991 1.74772 1.11584 1.08406 1.17963 1.25657 0.83335 0.90424 0.98679 1.17095 0.86250 0.91424 1.09141 1.21075 0.99193 0.91640 1.00260 1.20964 0.91744 0.99918 1.01089 1.21706 0.98187 0.94531 0.95908 1.18965 0.92787 0.92662 0.96396 1.18399 0.90451 0.93079 1.04131 1.20270 0.95685 0.93056 1.12929 1.20436 0.91877 0.98147 1.03596 1.17964 0.79182 0.91235 1.15690 1.91280 1.44088 1.83639 1.95051 1.17532 0.94244 0.89153 0.91186 1.19492 0.96568 0.96883 1.35042 0.89767 1.25912 0.97106 0.98848 0.92312 1.69788 1.30517 1.19600 1.21542 0.86274 0.81255 0.78703 0.80107 1.18594 1.20121 1.18768 1.21318 0.89701 0.99721 1.03280 1.21283 0.89289 1.01057 0.96935 1.84811 1.17294 1.38022 1.70219 0.88419 0.88996 0.87606 0.85795 0.85275 0.84261 0.87734 0.87696 0.90403 0.84853 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.15 1.75 8.47 -12.89 -0.11 1.64 16 3 N -0.28 -4.32 12.22 32.58 0.40 -3.92 16 4 N -0.28 -4.76 11.91 32.07 0.38 -4.38 16 5 C 0.23 3.51 7.99 -13.87 -0.11 3.40 16 6 C -0.04 -0.57 5.87 -105.02 -0.62 -1.19 16 7 C -0.10 -1.36 9.72 -39.13 -0.38 -1.74 16 8 C -0.12 -1.60 10.02 -39.69 -0.40 -2.00 16 9 C -0.08 -1.39 9.42 -39.18 -0.37 -1.76 16 10 C -0.01 -0.15 5.87 -104.95 -0.62 -0.76 16 11 C -0.06 -1.30 5.87 -104.96 -0.62 -1.91 16 12 C -0.20 -4.23 9.43 -38.99 -0.37 -4.60 16 13 C -0.12 -2.70 9.99 -39.65 -0.40 -3.09 16 14 C -0.02 -0.51 7.31 -38.58 -0.28 -0.79 16 15 F -0.16 -4.01 16.70 2.25 0.04 -3.97 16 16 C 0.08 2.10 5.58 -106.80 -0.60 1.51 16 17 C -0.45 -11.56 8.78 -37.79 -0.33 -11.89 16 18 H 0.08 2.15 7.73 -52.49 -0.41 1.74 16 19 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -18.73 10.96 55.55 0.61 -18.12 16 21 Si 0.91 17.71 29.60 -169.99 -5.03 12.68 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 C -0.12 -2.87 8.06 -38.56 -0.31 -3.18 16 26 C -0.07 -1.13 9.07 -38.85 -0.35 -1.49 16 27 O -0.22 -2.97 10.66 4.04 0.04 -2.93 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.12 1.36 7.93 -52.48 -0.42 0.94 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.14 2.34 6.18 -52.48 -0.32 2.01 16 34 H 0.10 1.97 6.17 -52.49 -0.32 1.64 16 35 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 37 H 0.13 3.11 4.28 -52.48 -0.22 2.88 16 38 H 0.14 2.42 5.98 -52.48 -0.31 2.10 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -28.88 337.56 -7.29 -36.18 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -3.26 Total: 5.44 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -5.56 Total: -26.07 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 1.39 Total: -26.42 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.88 -7.29 -36.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241936164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.031 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds