Wall clock time and date at job start Tue Mar 31 2020 14:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30389 * 126.18692 * 2 1 4 4 N 1.28668 * 109.52328 * 179.97438 * 3 2 1 5 5 C 1.31228 * 109.25017 * 0.02562 * 4 3 2 6 6 C 1.47864 * 126.37631 * 180.02562 * 5 4 3 7 7 C 1.39645 * 120.08348 * 179.70284 * 6 5 4 8 8 C 1.38026 * 120.09964 * 179.76900 * 7 6 5 9 9 C 1.38148 * 120.27035 * 0.50739 * 8 7 6 10 10 C 1.39413 * 120.16889 * 359.74267 * 9 8 7 11 11 C 1.48411 * 120.04839 * 179.97438 * 10 9 8 12 12 C 1.39818 * 119.96156 * 179.75167 * 11 10 9 13 13 C 1.38233 * 120.41866 * 179.72382 * 12 11 10 14 14 C 1.38066 * 120.34969 * 0.55058 * 13 12 11 15 15 F 1.35097 * 120.04158 * 179.75080 * 14 13 12 16 16 C 1.41036 * 119.91542 * 359.72232 * 14 13 12 17 17 C 1.41315 * 120.20735 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99897 * 24.62991 * 17 16 14 19 19 C 1.39915 * 120.00060 * 204.63293 * 17 16 14 20 20 N 1.30849 * 120.00223 * 17.80145 * 19 17 16 21 21 Si 1.86808 * 119.99909 * 197.80254 * 19 17 16 22 22 H 1.48496 * 109.47187 * 60.00128 * 21 19 17 23 23 H 1.48506 * 109.46910 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47108 * 299.99595 * 21 19 17 25 25 C 1.38661 * 119.96737 * 0.02562 * 11 10 9 26 26 C 1.39107 * 119.89717 * 0.02562 * 10 9 8 27 27 O 1.34410 * 126.18839 * 179.69513 * 2 1 3 28 28 H 1.08994 * 109.47224 * 90.02404 * 1 2 3 29 29 H 1.09001 * 109.46554 * 210.02461 * 1 2 3 30 30 H 1.09001 * 109.47107 * 330.01880 * 1 2 3 31 31 H 1.08004 * 119.94673 * 0.02562 * 7 6 5 32 32 H 1.07994 * 119.86340 * 180.23299 * 8 7 6 33 33 H 1.08005 * 119.91770 * 179.77014 * 9 8 7 34 34 H 1.07995 * 119.78590 * 359.97438 * 12 11 10 35 35 H 1.08000 * 119.82082 * 180.27647 * 13 12 11 36 36 H 0.96998 * 120.00648 * 180.02562 * 20 19 17 37 37 H 1.08003 * 120.16993 * 0.02744 * 25 11 10 38 38 H 1.08003 * 120.13239 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0524 0.0000 4 7 3.5095 0.6834 0.0005 5 6 3.5687 -0.6275 0.0004 6 6 4.7976 -1.4499 0.0014 7 6 4.7073 -2.8434 0.0073 8 6 5.8542 -3.6114 0.0034 9 6 7.0967 -3.0074 0.0042 10 6 7.1999 -1.6171 0.0035 11 6 8.5361 -0.9712 0.0050 12 6 8.6375 0.4233 -0.0009 13 6 9.8771 1.0349 0.0061 14 6 11.0299 0.2751 0.0076 15 9 12.2382 0.8794 0.0094 16 6 10.9444 -1.1327 0.0079 17 6 12.1204 -1.9164 0.0089 18 1 13.0410 -1.5082 0.3992 19 6 12.0921 -3.2210 -0.4959 20 7 11.1098 -3.6009 -1.2724 21 14 13.4566 -4.4205 -0.0611 22 1 13.5016 -4.6065 1.4114 23 1 13.1946 -5.7270 -0.7168 24 1 14.7578 -3.8818 -0.5322 25 6 9.6825 -1.7512 0.0065 26 6 6.0486 -0.8364 0.0026 27 8 2.3006 -1.0848 0.0058 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 3.7386 -3.3209 0.0107 32 1 5.7799 -4.6888 0.0042 33 1 7.9904 -3.6139 0.0049 34 1 7.7416 1.0264 -0.0070 35 1 9.9442 2.1128 0.0060 36 1 11.0899 -4.5055 -1.6220 37 1 9.6060 -2.8285 0.0061 38 1 6.1242 0.2410 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241936164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:27 Heat of formation + Delta-G solvation = 11.208431 kcal Electronic energy + Delta-G solvation = -25246.429465 eV Core-core repulsion = 21354.817858 eV Total energy + Delta-G solvation = -3891.611607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.23512 -45.24585 -40.62882 -38.84401 -37.30544 -35.78590 -34.58044 -33.21147 -32.32772 -31.60984 -29.56395 -28.81619 -27.33213 -25.50090 -24.39968 -23.63808 -23.30653 -22.22387 -21.53601 -19.45505 -18.54759 -18.47659 -18.16489 -17.43119 -17.27667 -16.72746 -16.50837 -16.01044 -15.81755 -15.65572 -15.21667 -14.82156 -14.68454 -14.40951 -14.35862 -13.93369 -13.76775 -13.61323 -13.55496 -13.44945 -13.21307 -13.03975 -12.88537 -12.73175 -12.54504 -12.43191 -12.15552 -12.01491 -11.77282 -11.31571 -11.28593 -11.09193 -10.31879 -9.66239 -9.56328 -8.84932 -8.63166 -6.44425 -0.62149 -0.07707 0.58858 0.86618 1.03136 1.08139 1.37857 1.39100 1.48933 1.53972 2.19029 2.51962 2.72269 2.87542 3.33826 3.54178 3.64237 3.80357 3.92279 4.01740 4.09376 4.12183 4.29724 4.34426 4.38434 4.46968 4.58653 4.59708 4.69894 4.74737 4.94012 4.98643 5.06112 5.10555 5.21317 5.22190 5.34248 5.51186 5.54607 5.67428 5.83568 5.96234 6.00689 6.13593 6.49319 6.73839 6.82161 7.15429 8.23504 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019541 B = 0.002945 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.515798 B = 9506.650908 C =10850.263242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.172 3.828 3 N -0.327 5.327 4 N -0.312 5.312 5 C 0.215 3.785 6 C -0.041 4.041 7 C -0.081 4.081 8 C -0.106 4.106 9 C -0.091 4.091 10 C -0.038 4.038 11 C -0.054 4.054 12 C -0.202 4.202 13 C -0.120 4.120 14 C -0.060 4.060 15 F -0.170 7.170 16 C 0.055 3.945 17 C -0.491 4.491 18 H 0.070 0.930 19 C 0.043 3.957 20 N -0.809 5.809 21 Si 0.982 3.018 22 H -0.259 1.259 23 H -0.258 1.258 24 H -0.266 1.266 25 C -0.140 4.140 26 C -0.071 4.071 27 O -0.220 6.220 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.296 0.704 37 H 0.133 0.867 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.695 -4.644 1.774 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.038 4.038 3 N -0.174 5.174 4 N -0.158 5.158 5 C 0.006 3.994 6 C -0.043 4.043 7 C -0.100 4.100 8 C -0.123 4.123 9 C -0.110 4.110 10 C -0.038 4.038 11 C -0.054 4.054 12 C -0.221 4.221 13 C -0.139 4.139 14 C -0.080 4.080 15 F -0.149 7.149 16 C 0.052 3.948 17 C -0.520 4.520 18 H 0.088 0.912 19 C -0.174 4.174 20 N -0.434 5.434 21 Si 0.802 3.198 22 H -0.183 1.183 23 H -0.181 1.181 24 H -0.191 1.191 25 C -0.159 4.159 26 C -0.090 4.090 27 O -0.100 6.100 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.177 0.823 32 H 0.186 0.814 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.150 0.850 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.417 -3.531 1.618 19.802 hybrid contribution 1.072 -0.919 -0.014 1.412 sum -18.345 -4.449 1.605 18.945 Atomic orbital electron populations 1.20783 0.75768 1.07586 1.07171 1.29239 0.99484 0.78442 0.96655 1.74340 0.96066 1.27187 1.19774 1.74695 1.12998 1.09460 1.18655 1.25531 0.84098 0.90135 0.99611 1.17175 0.85653 0.92483 1.08978 1.21481 1.00716 0.90577 0.97266 1.21320 0.90170 1.01817 0.98999 1.21755 0.99449 0.93608 0.96150 1.18823 0.91513 0.93752 0.99680 1.18734 0.91694 0.93336 1.01664 1.20618 0.96152 0.93446 1.11917 1.20724 0.91403 0.99307 1.02423 1.18285 0.79734 0.91640 1.18385 1.91234 1.44649 1.83664 1.95389 1.17923 0.95286 0.89863 0.91721 1.19635 0.96305 0.98727 1.37307 0.91182 1.26657 0.99583 0.99550 0.91560 1.69801 1.31716 1.20509 1.21393 0.85253 0.77830 0.76844 0.79870 1.18339 1.18131 1.19089 1.21337 0.89798 0.99897 1.04862 1.21152 0.89790 1.00593 0.97473 1.84823 1.16539 1.38356 1.70314 0.86047 0.86334 0.86147 0.82316 0.81393 0.85217 0.85413 0.85376 0.89303 0.84973 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.17 3.57 8.47 88.32 0.75 4.32 16 3 N -0.33 -9.55 12.22 -165.33 -2.02 -11.57 16 4 N -0.31 -10.42 11.91 -166.30 -1.98 -12.40 16 5 C 0.21 6.32 7.99 87.33 0.70 7.02 16 6 C -0.04 -1.19 5.87 -20.12 -0.12 -1.31 16 7 C -0.08 -1.87 9.72 22.56 0.22 -1.65 16 8 C -0.11 -2.48 10.02 22.20 0.22 -2.26 16 9 C -0.09 -2.91 9.42 22.53 0.21 -2.70 16 10 C -0.04 -1.39 5.87 -20.07 -0.12 -1.51 16 11 C -0.05 -2.39 5.87 -20.08 -0.12 -2.51 16 12 C -0.20 -8.76 9.43 22.65 0.21 -8.54 16 13 C -0.12 -5.48 9.99 22.23 0.22 -5.26 16 14 C -0.06 -3.16 7.31 22.92 0.17 -2.99 16 15 F -0.17 -8.94 16.70 44.97 0.75 -8.19 16 16 C 0.06 2.99 5.58 -21.28 -0.12 2.87 16 17 C -0.49 -26.57 8.78 23.43 0.21 -26.36 16 18 H 0.07 3.82 7.73 -2.91 -0.02 3.80 16 19 C 0.04 2.10 5.14 85.25 0.44 2.54 16 20 N -0.81 -39.12 10.96 21.82 0.24 -38.89 16 21 Si 0.98 36.69 29.60 68.60 2.03 38.72 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 25 C -0.14 -6.93 8.06 22.93 0.18 -6.74 16 26 C -0.07 -2.39 9.07 22.74 0.21 -2.19 16 27 O -0.22 -5.21 10.66 -8.47 -0.09 -5.30 16 28 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.16 2.62 7.93 -2.91 -0.02 2.59 16 32 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.13 4.37 6.18 -2.91 -0.02 4.35 16 34 H 0.13 4.85 6.17 -2.91 -0.02 4.83 16 35 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 36 H 0.30 12.66 8.30 -92.71 -0.77 11.89 16 37 H 0.13 6.44 4.28 -2.91 -0.01 6.43 16 38 H 0.13 4.59 5.98 -2.91 -0.02 4.57 16 Total: -1.00 -67.40 337.56 4.08 -63.32 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 1.14 Total: 21.25 kcal Atomic # 6 Polarization: -50.95 SS G_CDS: 4.01 Total: -46.93 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -3.76 Total: -62.85 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.09 Total: -5.30 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 0.75 Total: -8.19 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -67.40 4.08 -63.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241936164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.529 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds