Wall clock time and date at job start Tue Mar 31 2020 14:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30379 * 126.19063 * 2 1 4 4 N 1.28660 * 109.52423 * 180.02562 * 3 2 1 5 5 C 1.31226 * 109.25220 * 0.02562 * 4 3 2 6 6 C 1.47865 * 126.37748 * 180.02562 * 5 4 3 7 7 C 1.39641 * 120.08073 * 179.69665 * 6 5 4 8 8 C 1.38030 * 120.10040 * 179.76443 * 7 6 5 9 9 C 1.38152 * 120.26995 * 0.51620 * 8 7 6 10 10 C 1.39413 * 120.17038 * 359.73795 * 9 8 7 11 11 C 1.48387 * 120.05361 * 179.97438 * 10 9 8 12 12 C 1.38661 * 120.01828 * 309.74396 * 11 10 9 13 13 C 1.40551 * 119.66170 * 179.77222 * 12 11 10 14 14 C 1.41342 * 120.15921 * 180.24706 * 13 12 11 15 15 H 1.08003 * 119.99285 * 24.80830 * 14 13 12 16 16 C 1.39896 * 120.00366 * 204.80242 * 14 13 12 17 17 N 1.30866 * 119.99634 * 17.92712 * 16 14 13 18 18 Si 1.86794 * 120.00438 * 197.92726 * 16 14 13 19 19 H 1.48497 * 109.46985 * 60.00080 * 18 16 14 20 20 H 1.48498 * 109.47373 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47095 * 300.00340 * 18 16 14 22 22 C 1.40850 * 119.68473 * 0.48428 * 13 12 11 23 23 C 1.37551 * 120.02293 * 359.76600 * 22 13 12 24 24 C 1.38763 * 120.35000 * 0.02562 * 23 22 13 25 25 F 1.35093 * 119.84603 * 180.02562 * 24 23 22 26 26 C 1.39119 * 119.89534 * 0.02562 * 10 9 8 27 27 O 1.34411 * 126.18141 * 179.69644 * 2 1 3 28 28 H 1.08997 * 109.46970 * 90.01894 * 1 2 3 29 29 H 1.08997 * 109.47120 * 210.02654 * 1 2 3 30 30 H 1.08999 * 109.46435 * 330.01987 * 1 2 3 31 31 H 1.08007 * 119.95343 * 0.02562 * 7 6 5 32 32 H 1.07999 * 119.86792 * 180.25151 * 8 7 6 33 33 H 1.07998 * 119.91412 * 179.76510 * 9 8 7 34 34 H 1.08001 * 120.16895 * 0.02562 * 12 11 10 35 35 H 0.97002 * 119.99988 * 179.97438 * 17 16 14 36 36 H 1.08000 * 119.98817 * 179.79208 * 22 13 12 37 37 H 1.07999 * 119.82921 * 179.97438 * 23 22 13 38 38 H 1.07999 * 120.13592 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0522 0.0000 4 7 3.5094 0.6832 -0.0005 5 6 3.5686 -0.6277 -0.0015 6 6 4.7975 -1.4501 -0.0018 7 6 4.7071 -2.8435 0.0036 8 6 5.8540 -3.6116 -0.0016 9 6 7.0965 -3.0078 -0.0014 10 6 7.1999 -1.6175 -0.0015 11 6 8.5359 -0.9717 -0.0007 12 6 9.4939 -1.3608 0.9231 13 6 10.7585 -0.7474 0.9140 14 6 11.7447 -1.1395 1.8475 15 1 11.7121 -2.1266 2.2848 16 6 12.7629 -0.2493 2.2050 17 7 12.6257 1.0305 1.9691 18 14 14.3184 -0.8874 3.0190 19 1 14.9893 -1.8552 2.1143 20 1 15.2339 0.2485 3.2961 21 1 13.9683 -1.5629 4.2943 22 6 11.0367 0.2635 -0.0265 23 6 10.0749 0.6430 -0.9337 24 6 8.8275 0.0352 -0.9286 25 9 7.8907 0.4155 -1.8245 26 6 6.0486 -0.8366 -0.0012 27 8 2.3005 -1.0849 0.0057 28 1 -0.3633 -0.0003 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3632 0.8902 0.5135 31 1 3.7384 -3.3211 0.0076 32 1 5.7797 -4.6891 -0.0015 33 1 7.9901 -3.6144 -0.0017 34 1 9.2710 -2.1341 1.6433 35 1 13.3315 1.6479 2.2172 36 1 12.0056 0.7404 -0.0357 37 1 10.2915 1.4187 -1.6532 38 1 6.1242 0.2407 -0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241937183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:02 Heat of formation + Delta-G solvation = 28.148756 kcal Electronic energy + Delta-G solvation = -25285.009117 eV Core-core repulsion = 21394.132098 eV Total energy + Delta-G solvation = -3890.877019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.56149 -44.17830 -39.19284 -37.29359 -36.21912 -34.00429 -33.42230 -31.88496 -31.21846 -29.79976 -28.28559 -27.88225 -25.19308 -24.32786 -23.25011 -22.24066 -21.87361 -20.79036 -20.34640 -17.97645 -17.49078 -17.00007 -16.41060 -16.08651 -15.68477 -15.47354 -15.16230 -14.69444 -14.45584 -14.20413 -13.99388 -13.67706 -13.57278 -13.13417 -13.03515 -12.75851 -12.62880 -12.43206 -12.06769 -12.00095 -11.91047 -11.58287 -11.40524 -11.25659 -11.13925 -10.97822 -10.82807 -10.55845 -10.14558 -10.03788 -9.64240 -9.24720 -8.85078 -8.48701 -7.66633 -7.34497 -6.92836 -4.51024 0.49627 1.36708 1.64899 2.07991 2.42632 2.56741 2.71652 2.99504 3.00518 3.06751 3.67931 3.81640 3.90805 4.24168 4.39480 4.65605 4.93327 4.94519 5.00777 5.12169 5.20803 5.28412 5.30578 5.38455 5.51292 5.57397 5.63715 5.69783 5.91676 6.04545 6.10826 6.40415 6.45057 6.62012 6.69302 6.74886 6.92264 6.99769 7.06732 7.27792 7.51036 7.71169 7.80944 8.01336 8.24261 8.38649 8.67510 8.70895 10.02008 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002734 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.944180 B =10237.565127 C =10599.079337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.149 3.851 3 N -0.284 5.284 4 N -0.276 5.276 5 C 0.224 3.776 6 C -0.037 4.037 7 C -0.096 4.096 8 C -0.123 4.123 9 C -0.081 4.081 10 C -0.015 4.015 11 C -0.066 4.066 12 C -0.184 4.184 13 C 0.101 3.899 14 C -0.456 4.456 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.789 5.789 18 Si 0.912 3.088 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.024 4.024 25 F -0.166 7.166 26 C -0.048 4.048 27 O -0.224 6.224 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.285 0.715 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.030 -6.641 -2.231 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.061 4.061 3 N -0.132 5.132 4 N -0.123 5.123 5 C 0.017 3.983 6 C -0.039 4.039 7 C -0.116 4.116 8 C -0.141 4.141 9 C -0.099 4.099 10 C -0.015 4.015 11 C -0.067 4.067 12 C -0.203 4.203 13 C 0.099 3.901 14 C -0.485 4.485 15 H 0.100 0.900 16 C -0.144 4.144 17 N -0.413 5.413 18 Si 0.736 3.264 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.044 4.044 25 F -0.146 7.146 26 C -0.068 4.068 27 O -0.104 6.104 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.122 0.878 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.608 -5.114 -2.209 15.634 hybrid contribution 0.157 -1.185 0.267 1.225 sum -14.451 -6.299 -1.942 15.884 Atomic orbital electron populations 1.20318 0.80197 1.05587 1.05116 1.27990 0.97741 0.79669 1.00747 1.74402 0.96213 1.25631 1.16918 1.74809 1.11535 1.08386 1.17552 1.25609 0.83300 0.90445 0.98980 1.17109 0.86308 0.91443 1.09004 1.21100 0.99277 0.91605 0.99621 1.20946 0.91715 0.99897 1.01535 1.21559 0.97959 0.94002 0.96409 1.18862 0.92654 0.92765 0.97229 1.18218 0.92197 0.97878 0.98403 1.20889 0.92825 1.05662 1.00943 1.17564 0.90760 0.90669 0.91130 1.19530 1.07223 1.00569 1.21176 0.90027 1.25946 0.99628 0.94240 0.94576 1.69803 1.32790 1.02736 1.36010 0.86303 0.80516 0.79448 0.80171 1.18673 1.20234 1.18885 1.21316 0.98912 1.00636 0.94451 1.20654 0.92738 1.00527 1.00871 1.17259 0.88439 1.03009 0.95695 1.91310 1.65081 1.91115 1.67051 1.21324 0.89229 1.01150 0.95050 1.84803 1.17254 1.38040 1.70287 0.88418 0.88995 0.87586 0.85618 0.85144 0.84838 0.87619 0.90433 0.85403 0.87753 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.15 1.82 8.47 -12.89 -0.11 1.71 16 3 N -0.28 -4.53 12.22 32.58 0.40 -4.14 16 4 N -0.28 -4.99 11.91 32.07 0.38 -4.61 16 5 C 0.22 3.63 7.99 -13.87 -0.11 3.52 16 6 C -0.04 -0.59 5.87 -105.02 -0.62 -1.20 16 7 C -0.10 -1.27 9.72 -39.13 -0.38 -1.65 16 8 C -0.12 -1.55 10.02 -39.69 -0.40 -1.95 16 9 C -0.08 -1.24 9.49 -39.18 -0.37 -1.61 16 10 C -0.02 -0.28 5.30 -104.95 -0.56 -0.84 16 11 C -0.07 -1.43 5.47 -104.90 -0.57 -2.01 16 12 C -0.18 -4.16 9.24 -38.55 -0.36 -4.51 16 13 C 0.10 2.51 5.57 -106.86 -0.60 1.91 16 14 C -0.46 -11.19 9.04 -37.78 -0.34 -11.53 16 15 H 0.08 1.90 7.91 -52.48 -0.42 1.48 16 16 C 0.07 1.76 5.13 -17.34 -0.09 1.67 16 17 N -0.79 -19.24 10.96 55.54 0.61 -18.63 16 18 Si 0.91 17.53 29.60 -169.99 -5.03 12.50 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 C -0.13 -3.27 8.68 -38.85 -0.34 -3.61 16 23 C -0.13 -2.97 9.99 -39.64 -0.40 -3.36 16 24 C -0.02 -0.55 7.18 -38.73 -0.28 -0.83 16 25 F -0.17 -3.73 15.86 2.25 0.04 -3.70 16 26 C -0.05 -0.88 8.50 -38.84 -0.33 -1.21 16 27 O -0.22 -3.07 10.66 4.02 0.04 -3.02 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 1.34 7.93 -52.48 -0.42 0.93 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.13 1.88 8.04 -52.49 -0.42 1.46 16 34 H 0.11 2.21 8.04 -52.49 -0.42 1.79 16 35 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 36 H 0.13 3.19 6.15 -52.49 -0.32 2.86 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.14 2.77 7.57 -52.49 -0.40 2.37 16 LS Contribution 343.17 15.07 5.17 5.17 Total: -1.00 -29.00 343.17 -7.50 -36.50 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.64 Total: 5.38 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -5.46 Total: -25.44 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: 1.39 Total: -27.38 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.04 Total: -3.70 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.00 -7.50 -36.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241937183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.644 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds