Wall clock time and date at job start Tue Mar 31 2020 14:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30379 * 126.19063 * 2 1 4 4 N 1.28660 * 109.52423 * 180.02562 * 3 2 1 5 5 C 1.31226 * 109.25220 * 0.02562 * 4 3 2 6 6 C 1.47865 * 126.37748 * 180.02562 * 5 4 3 7 7 C 1.39641 * 120.08073 * 179.69665 * 6 5 4 8 8 C 1.38030 * 120.10040 * 179.76443 * 7 6 5 9 9 C 1.38152 * 120.26995 * 0.51620 * 8 7 6 10 10 C 1.39413 * 120.17038 * 359.73795 * 9 8 7 11 11 C 1.48387 * 120.05361 * 179.97438 * 10 9 8 12 12 C 1.38661 * 120.01828 * 309.74396 * 11 10 9 13 13 C 1.40551 * 119.66170 * 179.77222 * 12 11 10 14 14 C 1.41342 * 120.15921 * 180.24706 * 13 12 11 15 15 H 1.08003 * 119.99285 * 24.80830 * 14 13 12 16 16 C 1.39896 * 120.00366 * 204.80242 * 14 13 12 17 17 N 1.30866 * 119.99634 * 17.92712 * 16 14 13 18 18 Si 1.86794 * 120.00438 * 197.92726 * 16 14 13 19 19 H 1.48497 * 109.46985 * 60.00080 * 18 16 14 20 20 H 1.48498 * 109.47373 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47095 * 300.00340 * 18 16 14 22 22 C 1.40850 * 119.68473 * 0.48428 * 13 12 11 23 23 C 1.37551 * 120.02293 * 359.76600 * 22 13 12 24 24 C 1.38763 * 120.35000 * 0.02562 * 23 22 13 25 25 F 1.35093 * 119.84603 * 180.02562 * 24 23 22 26 26 C 1.39119 * 119.89534 * 0.02562 * 10 9 8 27 27 O 1.34411 * 126.18141 * 179.69644 * 2 1 3 28 28 H 1.08997 * 109.46970 * 90.01894 * 1 2 3 29 29 H 1.08997 * 109.47120 * 210.02654 * 1 2 3 30 30 H 1.08999 * 109.46435 * 330.01987 * 1 2 3 31 31 H 1.08007 * 119.95343 * 0.02562 * 7 6 5 32 32 H 1.07999 * 119.86792 * 180.25151 * 8 7 6 33 33 H 1.07998 * 119.91412 * 179.76510 * 9 8 7 34 34 H 1.08001 * 120.16895 * 0.02562 * 12 11 10 35 35 H 0.97002 * 119.99988 * 179.97438 * 17 16 14 36 36 H 1.08000 * 119.98817 * 179.79208 * 22 13 12 37 37 H 1.07999 * 119.82921 * 179.97438 * 23 22 13 38 38 H 1.07999 * 120.13592 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2769 1.0522 0.0000 4 7 3.5094 0.6832 -0.0005 5 6 3.5686 -0.6277 -0.0015 6 6 4.7975 -1.4501 -0.0018 7 6 4.7071 -2.8435 0.0036 8 6 5.8540 -3.6116 -0.0016 9 6 7.0965 -3.0078 -0.0014 10 6 7.1999 -1.6175 -0.0015 11 6 8.5359 -0.9717 -0.0007 12 6 9.4939 -1.3608 0.9231 13 6 10.7585 -0.7474 0.9140 14 6 11.7447 -1.1395 1.8475 15 1 11.7121 -2.1266 2.2848 16 6 12.7629 -0.2493 2.2050 17 7 12.6257 1.0305 1.9691 18 14 14.3184 -0.8874 3.0190 19 1 14.9893 -1.8552 2.1143 20 1 15.2339 0.2485 3.2961 21 1 13.9683 -1.5629 4.2943 22 6 11.0367 0.2635 -0.0265 23 6 10.0749 0.6430 -0.9337 24 6 8.8275 0.0352 -0.9286 25 9 7.8907 0.4155 -1.8245 26 6 6.0486 -0.8366 -0.0012 27 8 2.3005 -1.0849 0.0057 28 1 -0.3633 -0.0003 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3632 0.8902 0.5135 31 1 3.7384 -3.3211 0.0076 32 1 5.7797 -4.6891 -0.0015 33 1 7.9901 -3.6144 -0.0017 34 1 9.2710 -2.1341 1.6433 35 1 13.3315 1.6479 2.2172 36 1 12.0056 0.7404 -0.0357 37 1 10.2915 1.4187 -1.6532 38 1 6.1242 0.2407 -0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241937183.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:02 Heat of formation + Delta-G solvation = 10.412019 kcal Electronic energy + Delta-G solvation = -25285.778240 eV Core-core repulsion = 21394.132098 eV Total energy + Delta-G solvation = -3891.646142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.37095 -45.28358 -40.49356 -38.99037 -37.34420 -35.67701 -34.56669 -33.27459 -32.22912 -31.61694 -29.82069 -28.85562 -27.00267 -25.53204 -24.54256 -23.48993 -23.18366 -22.38117 -21.87307 -19.48327 -18.58854 -18.42830 -17.99285 -17.44574 -17.22681 -16.83556 -16.61023 -16.25853 -15.87568 -15.62949 -15.33508 -14.81644 -14.64665 -14.32619 -14.22868 -13.92117 -13.83031 -13.70599 -13.61668 -13.54546 -13.13747 -13.06032 -12.86051 -12.71058 -12.59859 -12.44563 -12.22890 -12.01531 -11.75893 -11.38908 -11.24559 -11.01010 -10.21340 -9.69631 -9.45316 -9.06623 -8.70157 -6.38593 -0.64549 0.05799 0.55883 0.76428 0.93280 1.05899 1.34137 1.41620 1.50831 1.54823 2.20195 2.55435 2.69636 2.74148 3.31573 3.50987 3.61107 3.78138 3.87598 3.94317 4.04201 4.09440 4.24416 4.31856 4.36692 4.46168 4.56829 4.67306 4.71701 4.80720 4.91112 4.98072 5.03921 5.08656 5.18043 5.24048 5.29173 5.47318 5.51570 5.73054 5.79317 5.86181 5.96923 6.19640 6.54254 6.83559 6.86850 7.12662 8.26949 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002734 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.944180 B =10237.565127 C =10599.079337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.173 3.827 3 N -0.330 5.330 4 N -0.318 5.318 5 C 0.214 3.786 6 C -0.044 4.044 7 C -0.077 4.077 8 C -0.103 4.103 9 C -0.079 4.079 10 C -0.047 4.047 11 C -0.056 4.056 12 C -0.191 4.191 13 C 0.078 3.922 14 C -0.483 4.483 15 H 0.089 0.911 16 C 0.035 3.965 17 N -0.821 5.821 18 Si 0.985 3.015 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.258 1.258 22 C -0.158 4.158 23 C -0.131 4.131 24 C -0.046 4.046 25 F -0.167 7.167 26 C -0.067 4.067 27 O -0.218 6.218 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.162 0.838 32 H 0.179 0.821 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.292 0.708 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.151 -9.702 -1.704 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.037 4.037 3 N -0.176 5.176 4 N -0.165 5.165 5 C 0.005 3.995 6 C -0.046 4.046 7 C -0.096 4.096 8 C -0.121 4.121 9 C -0.098 4.098 10 C -0.047 4.047 11 C -0.057 4.057 12 C -0.210 4.210 13 C 0.076 3.924 14 C -0.512 4.512 15 H 0.107 0.893 16 C -0.181 4.181 17 N -0.446 5.446 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.182 1.182 22 C -0.178 4.178 23 C -0.150 4.150 24 C -0.066 4.066 25 F -0.147 7.147 26 C -0.087 4.087 27 O -0.098 6.098 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.180 0.820 32 H 0.197 0.803 33 H 0.164 0.836 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.755 -8.153 -1.692 18.709 hybrid contribution 0.557 -0.249 0.071 0.614 sum -16.198 -8.402 -1.620 18.319 Atomic orbital electron populations 1.20799 0.75507 1.07652 1.07245 1.29300 0.99537 0.78420 0.96491 1.74334 0.95999 1.27386 1.19876 1.74733 1.13132 1.09840 1.18754 1.25569 0.84259 0.90095 0.99553 1.17198 0.85275 0.92847 1.09295 1.21551 1.01276 0.90072 0.96746 1.21424 0.89911 1.02093 0.98635 1.21767 1.00007 0.92374 0.95605 1.18773 0.90886 0.94419 1.00614 1.18499 0.93643 0.96755 0.96770 1.21057 0.92444 1.06044 1.01450 1.17928 0.91887 0.91134 0.91488 1.19848 1.08305 1.01248 1.21787 0.89327 1.26834 1.02360 0.94105 0.94822 1.69868 1.33988 1.03976 1.36750 0.85190 0.76178 0.78886 0.79175 1.18158 1.19577 1.18169 1.21239 0.98926 1.01872 0.95742 1.20814 0.92745 1.00672 1.00796 1.17486 0.88487 1.04090 0.96529 1.91294 1.65058 1.91225 1.67092 1.21052 0.90620 0.99765 0.97216 1.84814 1.16339 1.38255 1.70398 0.85934 0.86128 0.86202 0.82020 0.80334 0.83637 0.86142 0.89770 0.86549 0.86462 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.45 10.51 71.24 0.75 0.30 16 2 C 0.17 3.92 8.47 88.33 0.75 4.66 16 3 N -0.33 -10.58 12.22 -165.33 -2.02 -12.60 16 4 N -0.32 -11.91 11.91 -166.30 -1.98 -13.89 16 5 C 0.21 6.89 7.99 87.33 0.70 7.59 16 6 C -0.04 -1.39 5.87 -20.12 -0.12 -1.51 16 7 C -0.08 -1.76 9.72 22.56 0.22 -1.54 16 8 C -0.10 -2.16 10.02 22.20 0.22 -1.94 16 9 C -0.08 -2.26 9.49 22.53 0.21 -2.05 16 10 C -0.05 -1.76 5.30 -20.08 -0.11 -1.87 16 11 C -0.06 -2.51 5.47 -20.05 -0.11 -2.62 16 12 C -0.19 -8.89 9.24 22.94 0.21 -8.68 16 13 C 0.08 4.02 5.57 -21.31 -0.12 3.91 16 14 C -0.48 -24.28 9.04 23.44 0.21 -24.07 16 15 H 0.09 4.17 7.91 -2.91 -0.02 4.14 16 16 C 0.03 1.66 5.13 85.24 0.44 2.10 16 17 N -0.82 -41.23 10.96 21.82 0.24 -41.00 16 18 Si 0.99 35.86 29.60 68.60 2.03 37.89 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 22 C -0.16 -8.17 8.68 22.75 0.20 -7.97 16 23 C -0.13 -6.37 9.99 22.23 0.22 -6.15 16 24 C -0.05 -2.22 7.18 22.82 0.16 -2.05 16 25 F -0.17 -7.90 15.86 44.97 0.71 -7.19 16 26 C -0.07 -2.53 8.50 22.75 0.19 -2.33 16 27 O -0.22 -5.52 10.66 -8.51 -0.09 -5.61 16 28 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.16 2.56 7.93 -2.91 -0.02 2.54 16 32 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.15 3.77 8.04 -2.91 -0.02 3.74 16 34 H 0.12 5.11 8.04 -2.91 -0.02 5.08 16 35 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 36 H 0.12 6.16 6.15 -2.91 -0.02 6.14 16 37 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 38 H 0.11 4.67 7.57 -2.91 -0.02 4.64 16 Total: -1.00 -68.55 343.17 4.04 -64.51 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 1.11 Total: 22.10 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 4.04 Total: -44.21 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -3.76 Total: -67.49 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.09 Total: -5.61 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 0.71 Total: -7.19 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -68.55 4.04 -64.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241937183.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.926 kcal (2) G-P(sol) polarization free energy of solvation -68.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds