Wall clock time and date at job start Tue Mar 31 2020 14:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30389 * 126.19007 * 2 1 4 4 N 1.28658 * 109.52353 * 180.02562 * 3 2 1 5 5 C 1.31226 * 109.25705 * 359.97438 * 4 3 2 6 6 C 1.47858 * 126.38472 * 180.02562 * 5 4 3 7 7 C 1.39637 * 120.08703 * 179.69857 * 6 5 4 8 8 C 1.38023 * 120.09574 * 179.76715 * 7 6 5 9 9 C 1.38156 * 120.27447 * 0.51425 * 8 7 6 10 10 C 1.39407 * 120.16821 * 359.74321 * 9 8 7 11 11 C 1.48421 * 120.05095 * 179.97438 * 10 9 8 12 12 C 1.39683 * 119.98724 * 180.02562 * 11 10 9 13 13 C 1.38621 * 120.35657 * 179.97438 * 12 11 10 14 14 F 1.35098 * 119.83891 * 180.02562 * 13 12 11 15 15 C 1.37934 * 120.32629 * 0.02562 * 13 12 11 16 16 C 1.40715 * 119.96510 * 0.02562 * 15 13 12 17 17 C 1.41427 * 120.17372 * 180.02562 * 16 15 13 18 18 H 1.08009 * 119.99482 * 204.51748 * 17 16 15 19 19 C 1.39917 * 120.00549 * 24.51036 * 17 16 15 20 20 N 1.30833 * 119.99637 * 17.90558 * 19 17 16 21 21 Si 1.86803 * 120.00267 * 197.90361 * 19 17 16 22 22 H 1.48497 * 109.46945 * 94.69374 * 21 19 17 23 23 H 1.48497 * 109.46921 * 214.69326 * 21 19 17 24 24 H 1.48500 * 109.47014 * 334.69119 * 21 19 17 25 25 C 1.38733 * 119.98656 * 359.74812 * 11 10 9 26 26 C 1.39106 * 119.89653 * 359.97438 * 10 9 8 27 27 O 1.34416 * 126.18793 * 179.68619 * 2 1 3 28 28 H 1.09003 * 109.47003 * 90.02897 * 1 2 3 29 29 H 1.09002 * 109.47504 * 210.02916 * 1 2 3 30 30 H 1.08996 * 109.47329 * 330.02729 * 1 2 3 31 31 H 1.08001 * 119.95252 * 0.02562 * 7 6 5 32 32 H 1.08009 * 119.86543 * 180.25781 * 8 7 6 33 33 H 1.08002 * 119.91776 * 179.76243 * 9 8 7 34 34 H 1.08000 * 119.82188 * 359.97438 * 12 11 10 35 35 H 1.08003 * 120.02231 * 179.97438 * 15 13 12 36 36 H 0.97002 * 120.00038 * 180.02562 * 20 19 17 37 37 H 1.07993 * 120.16034 * 0.02562 * 25 11 10 38 38 H 1.07992 * 120.13230 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2768 1.0523 0.0000 4 7 3.5093 0.6833 -0.0005 5 6 3.5687 -0.6276 -0.0004 6 6 4.7974 -1.4500 -0.0003 7 6 4.7071 -2.8434 0.0063 8 6 5.8540 -3.6113 0.0015 9 6 7.0966 -3.0074 0.0009 10 6 7.1998 -1.6172 -0.0003 11 6 8.5361 -0.9711 -0.0003 12 6 8.6380 0.4220 -0.0009 13 6 9.8820 1.0335 -0.0005 14 9 9.9684 2.3817 -0.0005 15 6 11.0322 0.2721 0.0001 16 6 10.9455 -1.1323 -0.0004 17 6 12.1220 -1.9172 0.0008 18 1 12.0992 -2.9248 -0.3877 19 6 13.3153 -1.3886 0.5049 20 7 13.2879 -0.3355 1.2808 21 14 14.9475 -2.1863 0.0702 22 1 15.5413 -1.4924 -1.1007 23 1 15.8722 -2.0839 1.2276 24 1 14.7265 -3.6168 -0.2617 25 6 9.6834 -1.7511 0.0061 26 6 6.0485 -0.8364 -0.0014 27 8 2.3006 -1.0848 0.0059 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 3.7385 -3.3210 0.0109 32 1 5.7798 -4.6889 0.0024 33 1 7.9903 -3.6138 0.0010 34 1 7.7426 1.0260 -0.0018 35 1 11.9990 0.7537 0.0001 36 1 14.1152 0.0313 1.6300 37 1 9.6071 -2.8283 0.0107 38 1 6.1241 0.2409 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241937765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:06 Heat of formation + Delta-G solvation = 28.166839 kcal Electronic energy + Delta-G solvation = -25020.745361 eV Core-core repulsion = 21129.869126 eV Total energy + Delta-G solvation = -3890.876235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.69977 -44.23008 -39.36787 -37.26869 -36.27079 -34.14641 -33.47900 -31.75833 -31.35521 -29.73078 -28.21965 -27.84685 -25.67978 -24.32429 -23.36911 -22.32284 -22.02385 -20.46957 -20.30344 -18.11407 -17.54082 -17.07429 -16.56398 -15.94839 -15.67566 -15.34477 -14.86407 -14.67060 -14.58830 -14.37691 -14.09728 -13.76550 -13.72816 -13.18648 -13.08226 -12.97907 -12.92223 -12.49966 -12.13309 -11.97795 -11.74277 -11.72639 -11.35201 -11.20394 -11.12788 -10.99935 -10.67065 -10.54019 -10.16792 -10.09050 -9.77905 -9.43201 -8.92776 -8.55034 -7.61512 -7.22425 -6.93250 -4.60107 0.44048 1.21151 1.60046 2.03723 2.36902 2.55780 2.80207 2.99152 3.02594 3.06319 3.62885 3.79966 3.93341 4.19168 4.45845 4.61103 4.89220 4.90065 4.95074 5.08225 5.16187 5.21450 5.26303 5.40179 5.43326 5.53022 5.58340 5.72002 5.83368 5.98596 6.26046 6.36264 6.39665 6.50307 6.53318 6.76108 6.88617 6.95798 7.05100 7.35505 7.52947 7.61371 7.75348 8.03027 8.18554 8.37617 8.64640 8.66106 9.99567 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023076 B = 0.002668 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.071437 B =10492.830518 C =11615.871787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.150 3.850 3 N -0.284 5.284 4 N -0.278 5.278 5 C 0.223 3.777 6 C -0.035 4.035 7 C -0.100 4.100 8 C -0.119 4.119 9 C -0.088 4.088 10 C -0.012 4.012 11 C -0.018 4.018 12 C -0.259 4.259 13 C 0.108 3.892 14 F -0.164 7.164 15 C -0.191 4.191 16 C 0.125 3.875 17 C -0.455 4.455 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.784 5.784 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.206 4.206 26 C -0.063 4.063 27 O -0.223 6.223 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.285 0.715 37 H 0.106 0.894 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.935 -5.668 -1.750 17.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 N -0.132 5.132 4 N -0.125 5.125 5 C 0.016 3.984 6 C -0.036 4.036 7 C -0.120 4.120 8 C -0.137 4.137 9 C -0.106 4.106 10 C -0.012 4.012 11 C -0.018 4.018 12 C -0.279 4.279 13 C 0.089 3.911 14 F -0.143 7.143 15 C -0.211 4.211 16 C 0.122 3.878 17 C -0.484 4.484 18 H 0.103 0.897 19 C -0.145 4.145 20 N -0.408 5.408 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.226 4.226 26 C -0.082 4.082 27 O -0.103 6.103 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.439 -4.194 -1.587 17.040 hybrid contribution 0.364 -1.157 -0.034 1.213 sum -16.074 -5.351 -1.621 17.019 Atomic orbital electron populations 1.20324 0.80181 1.05622 1.05150 1.27998 0.97754 0.79635 1.00627 1.74403 0.96192 1.25610 1.16975 1.74784 1.11630 1.08387 1.17672 1.25625 0.83347 0.90442 0.98984 1.17109 0.86297 0.91447 1.08792 1.21097 0.99290 0.91622 0.99952 1.20965 0.91709 0.99952 1.01088 1.21625 0.98102 0.94320 0.96551 1.18960 0.92753 0.92690 0.96804 1.17946 0.90150 0.92162 1.01564 1.20329 0.95176 0.93832 1.18532 1.17539 0.94845 0.75550 1.03214 1.91352 1.97358 1.31127 1.94495 1.21405 0.96419 0.94469 1.08852 1.17290 0.92072 0.91023 0.87376 1.19601 0.92506 1.00770 1.35483 0.89721 1.25984 1.01613 0.94483 0.92422 1.69809 1.30401 1.19363 1.21238 0.86223 0.80416 0.80612 0.79115 1.19148 1.20132 1.18373 1.21121 0.91408 0.97824 1.12214 1.21332 0.89305 1.01241 0.96369 1.84809 1.17254 1.38035 1.70232 0.88386 0.88966 0.87565 0.85657 0.85141 0.84474 0.87507 0.85148 0.90401 0.87650 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.30 10.51 36.00 0.38 0.08 16 2 C 0.15 1.74 8.47 -12.89 -0.11 1.63 16 3 N -0.28 -4.31 12.22 32.58 0.40 -3.91 16 4 N -0.28 -4.73 11.91 32.07 0.38 -4.35 16 5 C 0.22 3.41 7.99 -13.88 -0.11 3.30 16 6 C -0.03 -0.52 5.87 -105.02 -0.62 -1.13 16 7 C -0.10 -1.25 9.72 -39.14 -0.38 -1.63 16 8 C -0.12 -1.44 10.02 -39.69 -0.40 -1.84 16 9 C -0.09 -1.29 9.42 -39.18 -0.37 -1.66 16 10 C -0.01 -0.21 5.87 -104.94 -0.62 -0.83 16 11 C -0.02 -0.38 5.87 -104.98 -0.62 -0.99 16 12 C -0.26 -5.76 9.41 -38.90 -0.37 -6.13 16 13 C 0.11 2.61 7.28 -39.55 -0.29 2.32 16 14 F -0.16 -3.89 17.26 2.25 0.04 -3.85 16 15 C -0.19 -4.88 8.66 -38.76 -0.34 -5.21 16 16 C 0.13 3.12 5.57 -106.87 -0.60 2.53 16 17 C -0.46 -11.16 9.05 -37.74 -0.34 -11.50 16 18 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 19 C 0.07 1.76 5.13 -17.35 -0.09 1.67 16 20 N -0.78 -19.43 10.96 55.55 0.61 -18.82 16 21 Si 0.91 17.58 29.60 -169.99 -5.03 12.55 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 25 C -0.21 -4.58 9.17 -38.52 -0.35 -4.93 16 26 C -0.06 -1.06 9.07 -38.85 -0.35 -1.41 16 27 O -0.22 -2.90 10.66 4.01 0.04 -2.86 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.27 7.93 -52.49 -0.42 0.85 16 32 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.14 1.89 6.18 -52.49 -0.32 1.56 16 34 H 0.11 2.20 6.18 -52.49 -0.32 1.88 16 35 H 0.13 3.46 6.15 -52.48 -0.32 3.14 16 36 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 37 H 0.11 2.09 6.18 -52.49 -0.32 1.76 16 38 H 0.14 2.48 5.99 -52.49 -0.31 2.16 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -29.07 338.29 -7.29 -36.36 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.27 Total: 5.52 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -5.56 Total: -25.74 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 1.39 Total: -27.07 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.07 -7.29 -36.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241937765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.523 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds