Wall clock time and date at job start Tue Mar 31 2020 14:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30389 * 126.19007 * 2 1 4 4 N 1.28658 * 109.52353 * 180.02562 * 3 2 1 5 5 C 1.31226 * 109.25705 * 359.97438 * 4 3 2 6 6 C 1.47858 * 126.38472 * 180.02562 * 5 4 3 7 7 C 1.39637 * 120.08703 * 179.69857 * 6 5 4 8 8 C 1.38023 * 120.09574 * 179.76715 * 7 6 5 9 9 C 1.38156 * 120.27447 * 0.51425 * 8 7 6 10 10 C 1.39407 * 120.16821 * 359.74321 * 9 8 7 11 11 C 1.48421 * 120.05095 * 179.97438 * 10 9 8 12 12 C 1.39683 * 119.98724 * 180.02562 * 11 10 9 13 13 C 1.38621 * 120.35657 * 179.97438 * 12 11 10 14 14 F 1.35098 * 119.83891 * 180.02562 * 13 12 11 15 15 C 1.37934 * 120.32629 * 0.02562 * 13 12 11 16 16 C 1.40715 * 119.96510 * 0.02562 * 15 13 12 17 17 C 1.41427 * 120.17372 * 180.02562 * 16 15 13 18 18 H 1.08009 * 119.99482 * 204.51748 * 17 16 15 19 19 C 1.39917 * 120.00549 * 24.51036 * 17 16 15 20 20 N 1.30833 * 119.99637 * 17.90558 * 19 17 16 21 21 Si 1.86803 * 120.00267 * 197.90361 * 19 17 16 22 22 H 1.48497 * 109.46945 * 94.69374 * 21 19 17 23 23 H 1.48497 * 109.46921 * 214.69326 * 21 19 17 24 24 H 1.48500 * 109.47014 * 334.69119 * 21 19 17 25 25 C 1.38733 * 119.98656 * 359.74812 * 11 10 9 26 26 C 1.39106 * 119.89653 * 359.97438 * 10 9 8 27 27 O 1.34416 * 126.18793 * 179.68619 * 2 1 3 28 28 H 1.09003 * 109.47003 * 90.02897 * 1 2 3 29 29 H 1.09002 * 109.47504 * 210.02916 * 1 2 3 30 30 H 1.08996 * 109.47329 * 330.02729 * 1 2 3 31 31 H 1.08001 * 119.95252 * 0.02562 * 7 6 5 32 32 H 1.08009 * 119.86543 * 180.25781 * 8 7 6 33 33 H 1.08002 * 119.91776 * 179.76243 * 9 8 7 34 34 H 1.08000 * 119.82188 * 359.97438 * 12 11 10 35 35 H 1.08003 * 120.02231 * 179.97438 * 15 13 12 36 36 H 0.97002 * 120.00038 * 180.02562 * 20 19 17 37 37 H 1.07993 * 120.16034 * 0.02562 * 25 11 10 38 38 H 1.07992 * 120.13230 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2768 1.0523 0.0000 4 7 3.5093 0.6833 -0.0005 5 6 3.5687 -0.6276 -0.0004 6 6 4.7974 -1.4500 -0.0003 7 6 4.7071 -2.8434 0.0063 8 6 5.8540 -3.6113 0.0015 9 6 7.0966 -3.0074 0.0009 10 6 7.1998 -1.6172 -0.0003 11 6 8.5361 -0.9711 -0.0003 12 6 8.6380 0.4220 -0.0009 13 6 9.8820 1.0335 -0.0005 14 9 9.9684 2.3817 -0.0005 15 6 11.0322 0.2721 0.0001 16 6 10.9455 -1.1323 -0.0004 17 6 12.1220 -1.9172 0.0008 18 1 12.0992 -2.9248 -0.3877 19 6 13.3153 -1.3886 0.5049 20 7 13.2879 -0.3355 1.2808 21 14 14.9475 -2.1863 0.0702 22 1 15.5413 -1.4924 -1.1007 23 1 15.8722 -2.0839 1.2276 24 1 14.7265 -3.6168 -0.2617 25 6 9.6834 -1.7511 0.0061 26 6 6.0485 -0.8364 -0.0014 27 8 2.3006 -1.0848 0.0059 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 3.7385 -3.3210 0.0109 32 1 5.7798 -4.6889 0.0024 33 1 7.9903 -3.6138 0.0010 34 1 7.7426 1.0260 -0.0018 35 1 11.9990 0.7537 0.0001 36 1 14.1152 0.0313 1.6300 37 1 9.6071 -2.8283 0.0107 38 1 6.1241 0.2409 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241937765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:05 Heat of formation + Delta-G solvation = 10.170630 kcal Electronic energy + Delta-G solvation = -25021.525735 eV Core-core repulsion = 21129.869126 eV Total energy + Delta-G solvation = -3891.656609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.62404 -45.26567 -40.64479 -38.91136 -37.32679 -35.81778 -34.53140 -33.16321 -32.35744 -31.45936 -29.67728 -28.84758 -27.44888 -25.49910 -24.63545 -23.45927 -23.35626 -22.01584 -21.80932 -19.62646 -18.56966 -18.44212 -17.84677 -17.51542 -17.08634 -16.82048 -16.40867 -16.28544 -16.16078 -15.85955 -15.29190 -15.05132 -14.53420 -14.44026 -14.42012 -13.96018 -13.90436 -13.61963 -13.58307 -13.42385 -13.16425 -13.02375 -12.85129 -12.73826 -12.42594 -12.33126 -12.12998 -12.03812 -11.75347 -11.51530 -11.31872 -11.07688 -10.35162 -9.68390 -9.45747 -8.87471 -8.69990 -6.47495 -0.63545 -0.08530 0.57643 0.74740 1.06046 1.08803 1.37072 1.41104 1.54164 1.55190 2.18434 2.52085 2.71135 2.87531 3.32528 3.51876 3.57922 3.68651 3.88983 3.96797 4.05226 4.15719 4.29999 4.35014 4.43549 4.45945 4.56659 4.57702 4.71261 4.81818 4.84880 5.01025 5.01816 5.04950 5.17281 5.23916 5.33534 5.44328 5.59301 5.68771 5.81780 5.90225 5.91872 6.19895 6.52736 6.80337 6.83021 7.13950 8.24658 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.023076 B = 0.002668 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.071437 B =10492.830518 C =11615.871787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.173 3.827 3 N -0.329 5.329 4 N -0.317 5.317 5 C 0.214 3.786 6 C -0.043 4.043 7 C -0.078 4.078 8 C -0.103 4.103 9 C -0.084 4.084 10 C -0.043 4.043 11 C -0.006 4.006 12 C -0.271 4.271 13 C 0.094 3.906 14 F -0.168 7.168 15 C -0.224 4.224 16 C 0.102 3.898 17 C -0.480 4.480 18 H 0.096 0.904 19 C 0.032 3.968 20 N -0.821 5.821 21 Si 0.987 3.013 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.248 1.248 25 C -0.213 4.213 26 C -0.074 4.074 27 O -0.219 6.219 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.176 0.824 33 H 0.147 0.853 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.291 0.709 37 H 0.131 0.869 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.510 -9.205 -2.026 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.038 4.038 3 N -0.176 5.176 4 N -0.163 5.163 5 C 0.005 3.995 6 C -0.045 4.045 7 C -0.098 4.098 8 C -0.121 4.121 9 C -0.102 4.102 10 C -0.043 4.043 11 C -0.006 4.006 12 C -0.290 4.290 13 C 0.075 3.925 14 F -0.147 7.147 15 C -0.244 4.244 16 C 0.099 3.901 17 C -0.508 4.508 18 H 0.114 0.886 19 C -0.184 4.184 20 N -0.445 5.445 21 Si 0.807 3.193 22 H -0.191 1.191 23 H -0.195 1.195 24 H -0.171 1.171 25 C -0.232 4.232 26 C -0.093 4.093 27 O -0.099 6.099 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.177 0.823 32 H 0.194 0.806 33 H 0.165 0.835 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.041 -7.709 -1.863 20.627 hybrid contribution 0.847 -0.084 0.063 0.854 sum -18.194 -7.794 -1.800 19.874 Atomic orbital electron populations 1.20789 0.75675 1.07607 1.07217 1.29261 0.99502 0.78434 0.96554 1.74341 0.96062 1.27316 1.19847 1.74707 1.13081 1.09729 1.18778 1.25596 0.84244 0.90114 0.99527 1.17194 0.85398 0.92704 1.09187 1.21540 1.01151 0.90275 0.96801 1.21410 0.89999 1.02056 0.98592 1.21827 0.99992 0.92863 0.95534 1.18792 0.90882 0.94172 1.00467 1.18266 0.92031 0.91569 0.98749 1.20549 0.94632 0.95000 1.18861 1.17775 0.95496 0.75485 1.03773 1.91325 1.97436 1.31324 1.94588 1.21296 0.95830 0.95269 1.12012 1.17664 0.93699 0.90947 0.87763 1.19935 0.93218 1.01413 1.36249 0.88631 1.26923 1.05090 0.94785 0.91619 1.69890 1.31664 1.20808 1.22182 0.85102 0.75483 0.79967 0.78700 1.19083 1.19534 1.17103 1.21375 0.90711 0.99168 1.11906 1.21159 0.90316 1.00381 0.97463 1.84819 1.16446 1.38263 1.70359 0.85968 0.86207 0.86241 0.82263 0.80618 0.83492 0.86594 0.87228 0.89850 0.85148 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.23 0.75 0.36 16 2 C 0.17 3.64 8.47 88.32 0.75 4.39 16 3 N -0.33 -9.91 12.22 -165.33 -2.02 -11.93 16 4 N -0.32 -10.96 11.91 -166.30 -1.98 -12.94 16 5 C 0.21 6.34 7.99 87.33 0.70 7.03 16 6 C -0.04 -1.22 5.87 -20.13 -0.12 -1.34 16 7 C -0.08 -1.63 9.72 22.56 0.22 -1.41 16 8 C -0.10 -2.00 10.02 22.20 0.22 -1.78 16 9 C -0.08 -2.24 9.42 22.53 0.21 -2.02 16 10 C -0.04 -1.49 5.87 -20.07 -0.12 -1.61 16 11 C -0.01 -0.25 5.87 -20.10 -0.12 -0.37 16 12 C -0.27 -12.69 9.41 22.71 0.21 -12.48 16 13 C 0.09 4.84 7.28 22.29 0.16 5.00 16 14 F -0.17 -8.47 17.26 44.97 0.78 -7.69 16 15 C -0.22 -12.15 8.66 22.80 0.20 -11.95 16 16 C 0.10 5.29 5.57 -21.32 -0.12 5.17 16 17 C -0.48 -24.05 9.05 23.46 0.21 -23.84 16 18 H 0.10 4.41 7.91 -2.91 -0.02 4.39 16 19 C 0.03 1.54 5.13 85.25 0.44 1.98 16 20 N -0.82 -42.33 10.96 21.82 0.24 -42.09 16 21 Si 0.99 36.16 29.60 68.60 2.03 38.19 16 22 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 24 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 25 C -0.21 -9.58 9.17 22.96 0.21 -9.37 16 26 C -0.07 -2.49 9.07 22.75 0.21 -2.29 16 27 O -0.22 -5.15 10.66 -8.55 -0.09 -5.24 16 28 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.16 2.30 7.93 -2.91 -0.02 2.28 16 32 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.15 3.60 6.18 -2.91 -0.02 3.58 16 34 H 0.12 5.10 6.18 -2.91 -0.02 5.08 16 35 H 0.11 6.28 6.15 -2.91 -0.02 6.27 16 36 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 37 H 0.13 5.05 6.18 -2.91 -0.02 5.04 16 38 H 0.12 4.50 5.99 -2.91 -0.02 4.49 16 Total: -1.00 -68.91 338.29 4.10 -64.81 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 1.13 Total: 21.44 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 4.02 Total: -44.54 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -3.76 Total: -66.96 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.09 Total: -5.24 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.78 Total: -7.69 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -68.91 4.10 -64.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241937765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.977 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds