Wall clock time and date at job start Tue Mar 31 2020 13:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39234 * 119.15918 * 2 1 4 4 C 1.36631 * 119.92199 * 180.02562 * 3 2 1 5 5 C 1.40770 * 118.16747 * 359.97438 * 4 3 2 6 6 C 1.40511 * 121.23590 * 179.97438 * 5 4 3 7 7 C 1.36173 * 120.07352 * 180.02562 * 6 5 4 8 8 C 1.39291 * 121.00422 * 0.02562 * 7 6 5 9 9 F 1.35101 * 119.65248 * 180.02562 * 8 7 6 10 10 C 1.38658 * 120.68971 * 359.97438 * 8 7 6 11 11 C 1.47972 * 120.31585 * 179.97438 * 10 8 7 12 12 C 1.39586 * 119.66706 * 131.68976 * 11 10 8 13 13 C 1.38153 * 119.13836 * 179.69677 * 12 11 10 14 14 C 1.39475 * 118.46576 * 0.54105 * 13 12 11 15 15 O 1.35709 * 120.37083 * 179.73140 * 14 13 12 16 16 C 1.34807 * 116.99968 * 5.73368 * 15 14 13 17 17 H 1.08004 * 120.00137 * 5.34573 * 16 15 14 18 18 C 1.38639 * 120.00180 * 185.34514 * 16 15 14 19 19 N 1.31568 * 120.00223 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00051 * 359.72273 * 18 16 15 21 21 H 1.48497 * 109.47376 * 270.27892 * 20 18 16 22 22 H 1.48503 * 109.47048 * 30.27807 * 20 18 16 23 23 H 1.48498 * 109.47672 * 150.27606 * 20 18 16 24 24 C 1.38950 * 119.25753 * 359.45890 * 14 13 12 25 25 N 1.31672 * 120.80053 * 0.27558 * 24 14 13 26 26 C 1.41581 * 118.93668 * 0.23196 * 5 4 3 27 27 N 1.31192 * 119.15301 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.46842 * 89.99891 * 1 2 3 29 29 H 1.08993 * 109.46890 * 210.00325 * 1 2 3 30 30 H 1.09006 * 109.46502 * 330.00003 * 1 2 3 31 31 H 1.08004 * 120.04168 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.92013 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.96416 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.49702 * 179.97438 * 7 6 5 35 35 H 1.08004 * 120.43146 * 359.97438 * 12 11 10 36 36 H 1.08000 * 120.76691 * 180.27188 * 13 12 11 37 37 H 0.97006 * 119.99949 * 179.72124 * 19 18 16 38 38 H 1.08001 * 119.60306 * 180.25690 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2159 0.0000 4 6 3.5516 1.2341 -0.0005 5 6 4.2326 0.0020 -0.0005 6 6 5.6365 -0.0545 -0.0016 7 6 6.2710 -1.2594 -0.0021 8 6 5.5488 -2.4505 -0.0020 9 9 6.2063 -3.6307 -0.0020 10 6 4.1623 -2.4375 -0.0010 11 6 3.4034 -3.7078 -0.0016 12 6 2.3572 -3.8880 0.9048 13 6 1.6519 -5.0758 0.8905 14 6 2.0231 -6.0583 -0.0273 15 8 1.3603 -7.2417 -0.0711 16 6 0.2740 -7.3644 0.7178 17 1 -0.0832 -6.5149 1.2809 18 6 -0.3846 -8.5812 0.8063 19 7 -1.4450 -8.7008 1.5758 20 14 0.2285 -10.0486 -0.1737 21 1 -0.4293 -10.0646 -1.5049 22 1 1.6995 -9.9466 -0.3497 23 1 -0.0971 -11.3012 0.5544 24 6 3.0754 -5.8097 -0.8999 25 7 3.7243 -4.6646 -0.8647 26 6 3.4795 -1.1969 -0.0050 27 7 2.1461 -1.1457 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3632 0.8901 0.5139 31 1 1.6324 2.1436 0.0004 32 1 4.0942 2.1679 -0.0001 33 1 6.2132 0.8587 -0.0020 34 1 7.3505 -1.2920 -0.0033 35 1 2.0996 -3.1072 1.6051 36 1 0.8349 -5.2415 1.5771 37 1 -1.9082 -9.5511 1.6346 38 1 3.3647 -6.5650 -1.6156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242052087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:49 Heat of formation + Delta-G solvation = 17.531822 kcal Electronic energy + Delta-G solvation = -25857.297723 eV Core-core repulsion = 21965.960319 eV Total energy + Delta-G solvation = -3891.337404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.66362 -40.96595 -39.57043 -37.56038 -36.93350 -33.81177 -32.55173 -32.04207 -31.32668 -30.89945 -28.49777 -27.79098 -25.52114 -23.81708 -23.23476 -22.84908 -22.33559 -20.88440 -18.64793 -18.15066 -17.53933 -17.17778 -16.89012 -15.82065 -15.70456 -15.45296 -15.22703 -14.76188 -14.59633 -14.37550 -14.13660 -14.02724 -13.64455 -13.20340 -13.01956 -12.98804 -12.84935 -12.56340 -12.47740 -12.30362 -12.24490 -12.00961 -11.64226 -11.27658 -11.20695 -10.97463 -10.51781 -10.36794 -9.77133 -9.49577 -9.09092 -8.95459 -8.83325 -8.67497 -8.36516 -7.35172 -6.55704 -4.20176 0.15116 0.63910 1.61930 2.05906 2.19403 2.69716 3.17350 3.19963 3.34297 3.89055 3.92675 4.13902 4.20681 4.37887 4.44610 4.56335 4.66695 4.69202 4.78579 4.88290 4.98096 5.08309 5.16889 5.31564 5.40932 5.51248 5.58898 5.66748 5.78826 5.81442 5.88405 5.89153 5.93071 6.00646 6.11674 6.17906 6.41662 6.52028 6.70162 6.92271 7.00488 7.27205 7.62377 7.85345 7.91838 8.66987 8.78020 9.36678 10.50811 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.003506 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.811552 B = 7984.412270 C = 9416.708522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.161 3.839 3 C -0.176 4.176 4 C -0.052 4.052 5 C -0.119 4.119 6 C -0.076 4.076 7 C -0.145 4.145 8 C 0.129 3.871 9 F -0.121 7.121 10 C -0.020 4.020 11 C 0.053 3.947 12 C -0.064 4.064 13 C -0.193 4.193 14 C 0.119 3.881 15 O -0.200 6.200 16 C -0.390 4.390 17 H 0.108 0.892 18 C 0.066 3.934 19 N -0.869 5.869 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.257 1.257 23 H -0.281 1.281 24 C 0.029 3.971 25 N -0.426 5.426 26 C 0.165 3.835 27 N -0.460 5.460 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.282 0.718 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.512 20.500 -1.964 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.008 3.992 3 C -0.196 4.196 4 C -0.078 4.078 5 C -0.121 4.121 6 C -0.095 4.095 7 C -0.163 4.163 8 C 0.107 3.893 9 F -0.099 7.099 10 C -0.023 4.023 11 C -0.082 4.082 12 C -0.084 4.084 13 C -0.219 4.219 14 C 0.063 3.937 15 O -0.102 6.102 16 C -0.465 4.465 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.506 5.506 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.181 1.181 23 H -0.206 1.206 24 C -0.134 4.134 25 N -0.135 5.135 26 C 0.042 3.958 27 N -0.169 5.169 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.161 0.839 37 H 0.093 0.907 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.653 19.346 -2.556 21.771 hybrid contribution -0.103 -0.153 0.357 0.401 sum 9.550 19.193 -2.200 21.551 Atomic orbital electron populations 1.20808 0.88509 1.03846 1.03460 1.21580 0.97331 0.87991 0.92270 1.21707 0.95026 0.99255 1.03566 1.21401 0.94423 0.96906 0.95046 1.18753 0.94662 0.93929 1.04802 1.20752 0.92460 0.97731 0.98549 1.20812 1.00989 0.90962 1.03551 1.17620 0.89031 0.81448 1.01212 1.91546 1.80365 1.44860 1.93151 1.18222 0.90481 0.91442 1.02159 1.18559 0.98595 0.92470 0.98622 1.21577 0.93286 0.96234 0.97322 1.21557 1.03751 0.94226 1.02392 1.20322 0.92249 0.86892 0.94213 1.83567 1.38419 1.29522 1.58730 1.20821 1.01135 0.99896 1.24667 0.87482 1.24512 0.95056 0.98103 0.96197 1.69648 1.17816 1.27184 1.35920 0.86156 0.80737 0.80160 0.79807 1.19591 1.18085 1.20608 1.21689 0.95458 0.95277 1.00967 1.67470 1.26109 0.99927 1.19972 1.18369 0.89278 0.90977 0.97133 1.67890 1.07980 1.28482 1.12517 0.90047 0.89867 0.90573 0.84570 0.84277 0.84447 0.84238 0.86120 0.83896 0.90739 0.83033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.15 36.01 0.37 -0.67 16 2 C 0.16 1.95 6.78 -82.49 -0.56 1.39 16 3 C -0.18 -1.63 9.64 -39.79 -0.38 -2.01 16 4 C -0.05 -0.47 9.89 -39.21 -0.39 -0.86 16 5 C -0.12 -1.43 5.74 -106.81 -0.61 -2.04 16 6 C -0.08 -0.75 9.75 -39.47 -0.38 -1.13 16 7 C -0.14 -1.64 9.91 -39.93 -0.40 -2.03 16 8 C 0.13 2.01 7.23 -39.04 -0.28 1.72 16 9 F -0.12 -2.09 16.34 2.25 0.04 -2.05 16 10 C -0.02 -0.36 5.63 -104.47 -0.59 -0.94 16 11 C 0.05 1.07 5.91 -82.96 -0.49 0.58 16 12 C -0.06 -1.29 8.79 -39.11 -0.34 -1.64 16 13 C -0.19 -4.28 9.21 -39.15 -0.36 -4.64 16 14 C 0.12 2.80 6.67 -38.86 -0.26 2.54 16 15 O -0.20 -5.19 8.59 0.24 0.00 -5.19 16 16 C -0.39 -10.72 9.91 30.88 0.31 -10.41 16 17 H 0.11 3.01 5.57 -52.48 -0.29 2.71 16 18 C 0.07 1.81 5.49 -17.52 -0.10 1.71 16 19 N -0.87 -24.41 13.96 55.48 0.77 -23.64 16 20 Si 0.91 21.11 28.62 -169.99 -4.86 16.25 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.03 0.63 11.14 -17.36 -0.19 0.44 16 25 N -0.43 -9.11 9.70 -9.64 -0.09 -9.21 16 26 C 0.17 2.58 6.51 -84.61 -0.55 2.03 16 27 N -0.46 -7.25 8.42 -7.05 -0.06 -7.31 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 31 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 2.22 7.54 -52.48 -0.40 1.83 16 36 H 0.14 3.20 5.83 -52.49 -0.31 2.90 16 37 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.15 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -31.80 337.20 -7.85 -39.64 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.51 Total: 2.39 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -5.22 Total: -15.97 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.62 Total: -40.15 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.86 Total: 16.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.80 -7.85 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242052087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.175 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds