Wall clock time and date at job start Tue Mar 31 2020 13:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39234 * 119.15918 * 2 1 4 4 C 1.36631 * 119.92199 * 180.02562 * 3 2 1 5 5 C 1.40770 * 118.16747 * 359.97438 * 4 3 2 6 6 C 1.40511 * 121.23590 * 179.97438 * 5 4 3 7 7 C 1.36173 * 120.07352 * 180.02562 * 6 5 4 8 8 C 1.39291 * 121.00422 * 0.02562 * 7 6 5 9 9 F 1.35101 * 119.65248 * 180.02562 * 8 7 6 10 10 C 1.38658 * 120.68971 * 359.97438 * 8 7 6 11 11 C 1.47972 * 120.31585 * 179.97438 * 10 8 7 12 12 C 1.39586 * 119.66706 * 131.68976 * 11 10 8 13 13 C 1.38153 * 119.13836 * 179.69677 * 12 11 10 14 14 C 1.39475 * 118.46576 * 0.54105 * 13 12 11 15 15 O 1.35709 * 120.37083 * 179.73140 * 14 13 12 16 16 C 1.34807 * 116.99968 * 5.73368 * 15 14 13 17 17 H 1.08004 * 120.00137 * 5.34573 * 16 15 14 18 18 C 1.38639 * 120.00180 * 185.34514 * 16 15 14 19 19 N 1.31568 * 120.00223 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00051 * 359.72273 * 18 16 15 21 21 H 1.48497 * 109.47376 * 270.27892 * 20 18 16 22 22 H 1.48503 * 109.47048 * 30.27807 * 20 18 16 23 23 H 1.48498 * 109.47672 * 150.27606 * 20 18 16 24 24 C 1.38950 * 119.25753 * 359.45890 * 14 13 12 25 25 N 1.31672 * 120.80053 * 0.27558 * 24 14 13 26 26 C 1.41581 * 118.93668 * 0.23196 * 5 4 3 27 27 N 1.31192 * 119.15301 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.46842 * 89.99891 * 1 2 3 29 29 H 1.08993 * 109.46890 * 210.00325 * 1 2 3 30 30 H 1.09006 * 109.46502 * 330.00003 * 1 2 3 31 31 H 1.08004 * 120.04168 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.92013 * 180.02562 * 4 3 2 33 33 H 1.07999 * 119.96416 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.49702 * 179.97438 * 7 6 5 35 35 H 1.08004 * 120.43146 * 359.97438 * 12 11 10 36 36 H 1.08000 * 120.76691 * 180.27188 * 13 12 11 37 37 H 0.97006 * 119.99949 * 179.72124 * 19 18 16 38 38 H 1.08001 * 119.60306 * 180.25690 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2159 0.0000 4 6 3.5516 1.2341 -0.0005 5 6 4.2326 0.0020 -0.0005 6 6 5.6365 -0.0545 -0.0016 7 6 6.2710 -1.2594 -0.0021 8 6 5.5488 -2.4505 -0.0020 9 9 6.2063 -3.6307 -0.0020 10 6 4.1623 -2.4375 -0.0010 11 6 3.4034 -3.7078 -0.0016 12 6 2.3572 -3.8880 0.9048 13 6 1.6519 -5.0758 0.8905 14 6 2.0231 -6.0583 -0.0273 15 8 1.3603 -7.2417 -0.0711 16 6 0.2740 -7.3644 0.7178 17 1 -0.0832 -6.5149 1.2809 18 6 -0.3846 -8.5812 0.8063 19 7 -1.4450 -8.7008 1.5758 20 14 0.2285 -10.0486 -0.1737 21 1 -0.4293 -10.0646 -1.5049 22 1 1.6995 -9.9466 -0.3497 23 1 -0.0971 -11.3012 0.5544 24 6 3.0754 -5.8097 -0.8999 25 7 3.7243 -4.6646 -0.8647 26 6 3.4795 -1.1969 -0.0050 27 7 2.1461 -1.1457 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3632 0.8901 0.5139 31 1 1.6324 2.1436 0.0004 32 1 4.0942 2.1679 -0.0001 33 1 6.2132 0.8587 -0.0020 34 1 7.3505 -1.2920 -0.0033 35 1 2.0996 -3.1072 1.6051 36 1 0.8349 -5.2415 1.5771 37 1 -1.9082 -9.5511 1.6346 38 1 3.3647 -6.5650 -1.6156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242052087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:48 Heat of formation + Delta-G solvation = -1.540315 kcal Electronic energy + Delta-G solvation = -25858.124753 eV Core-core repulsion = 21965.960319 eV Total energy + Delta-G solvation = -3892.164434 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.92804 -41.96995 -41.26412 -39.23189 -37.98688 -34.90321 -34.49064 -33.15639 -32.83323 -32.12509 -29.87913 -28.73369 -27.39053 -24.95143 -24.54460 -24.29605 -23.42740 -22.24781 -20.07091 -19.61483 -19.29425 -18.37984 -18.02305 -17.35202 -16.80699 -16.75896 -16.59532 -16.17793 -16.02256 -15.58929 -15.56933 -15.24769 -14.83063 -14.69869 -14.49892 -14.37674 -14.03415 -13.93979 -13.76691 -13.72776 -13.52582 -13.09013 -12.81336 -12.75894 -12.41854 -12.17077 -12.10947 -11.76983 -11.47480 -11.04106 -10.68705 -10.61205 -10.35984 -9.72398 -9.58779 -8.87831 -8.58687 -6.31607 -0.79995 -0.27759 0.22378 0.33048 0.98364 1.30633 1.35010 1.50370 1.77386 2.23534 2.63510 2.80907 2.92593 2.94650 3.03695 3.21570 3.45985 3.68038 3.74188 3.81756 3.91878 3.98279 3.99802 4.13876 4.23317 4.34667 4.46945 4.61684 4.71538 4.77347 4.78571 4.88723 4.95575 5.05346 5.08718 5.10450 5.19148 5.22987 5.27921 5.43302 5.56162 5.66083 5.83291 5.91641 6.73268 6.93674 7.02412 7.39188 8.52005 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.003506 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.811552 B = 7984.412270 C = 9416.708522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.153 3.847 3 C -0.175 4.175 4 C -0.033 4.033 5 C -0.135 4.135 6 C -0.036 4.036 7 C -0.157 4.157 8 C 0.126 3.874 9 F -0.139 7.139 10 C -0.080 4.080 11 C 0.078 3.922 12 C -0.068 4.068 13 C -0.194 4.194 14 C 0.091 3.909 15 O -0.222 6.222 16 C -0.406 4.406 17 H 0.083 0.917 18 C 0.019 3.981 19 N -0.912 5.912 20 Si 0.969 3.031 21 H -0.263 1.263 22 H -0.261 1.261 23 H -0.265 1.265 24 C 0.033 3.967 25 N -0.440 5.440 26 C 0.147 3.853 27 N -0.519 5.519 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.178 0.822 32 H 0.191 0.809 33 H 0.194 0.806 34 H 0.173 0.827 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.288 0.712 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.075 25.072 -2.793 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.002 3.998 3 C -0.194 4.194 4 C -0.059 4.059 5 C -0.137 4.137 6 C -0.054 4.054 7 C -0.175 4.175 8 C 0.104 3.896 9 F -0.118 7.118 10 C -0.083 4.083 11 C -0.059 4.059 12 C -0.088 4.088 13 C -0.220 4.220 14 C 0.039 3.961 15 O -0.126 6.126 16 C -0.482 4.482 17 H 0.100 0.900 18 C -0.182 4.182 19 N -0.551 5.551 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.185 1.185 23 H -0.189 1.189 24 C -0.128 4.128 25 N -0.150 5.150 26 C 0.024 3.976 27 N -0.230 5.230 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.195 0.805 32 H 0.208 0.792 33 H 0.211 0.789 34 H 0.190 0.810 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 12.235 23.946 -3.397 27.104 hybrid contribution -0.721 -0.999 0.610 1.375 sum 11.514 22.947 -2.787 25.824 Atomic orbital electron populations 1.20907 0.87528 1.04332 1.03901 1.22141 0.98329 0.88535 0.90833 1.22115 0.95659 0.99369 1.02264 1.21981 0.94449 0.97409 0.92020 1.19133 0.95805 0.93791 1.05018 1.21406 0.91684 0.99053 0.93256 1.21135 1.02465 0.89664 1.04220 1.18125 0.88690 0.82301 1.00441 1.91497 1.80587 1.46381 1.93298 1.18295 0.91429 0.90839 1.07696 1.19225 0.97310 0.93190 0.96132 1.21704 0.93501 0.95671 0.97901 1.21630 1.03521 0.94889 1.01945 1.20634 0.93302 0.86789 0.95424 1.83523 1.38780 1.30598 1.59746 1.20728 1.02486 0.99725 1.25296 0.89965 1.25282 0.95146 1.00559 0.97189 1.69719 1.19246 1.28261 1.37892 0.85235 0.79736 0.77209 0.78726 1.18730 1.18546 1.18929 1.22041 0.94449 0.95886 1.00466 1.67638 1.26484 1.00195 1.20642 1.18487 0.89721 0.91540 0.97838 1.67811 1.08743 1.30924 1.15488 0.89542 0.92380 0.87069 0.80495 0.79159 0.78926 0.80984 0.84748 0.85062 0.90178 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 10.15 71.24 0.72 -1.24 16 2 C 0.15 3.43 6.78 42.89 0.29 3.72 16 3 C -0.17 -2.40 9.64 22.13 0.21 -2.18 16 4 C -0.03 -0.41 9.89 22.51 0.22 -0.18 16 5 C -0.14 -2.67 5.74 -21.28 -0.12 -2.79 16 6 C -0.04 -0.50 9.75 22.34 0.22 -0.28 16 7 C -0.16 -2.96 9.91 22.04 0.22 -2.74 16 8 C 0.13 3.81 7.23 22.62 0.16 3.97 16 9 F -0.14 -4.81 16.34 44.97 0.73 -4.08 16 10 C -0.08 -2.80 5.63 -19.77 -0.11 -2.91 16 11 C 0.08 3.27 5.91 41.91 0.25 3.52 16 12 C -0.07 -2.90 8.79 22.58 0.20 -2.71 16 13 C -0.19 -9.25 9.21 22.55 0.21 -9.04 16 14 C 0.09 4.57 6.67 22.74 0.15 4.72 16 15 O -0.22 -12.18 8.59 -22.05 -0.19 -12.37 16 16 C -0.41 -23.91 9.91 67.92 0.67 -23.24 16 17 H 0.08 5.06 5.57 -2.91 -0.02 5.05 16 18 C 0.02 1.06 5.49 84.83 0.47 1.53 16 19 N -0.91 -53.72 13.96 21.61 0.30 -53.41 16 20 Si 0.97 44.94 28.62 68.60 1.96 46.90 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 C 0.03 1.47 11.14 84.89 0.95 2.42 16 25 N -0.44 -19.50 9.70 -184.43 -1.79 -21.29 16 26 C 0.15 4.43 6.51 40.56 0.26 4.69 16 27 N -0.52 -16.32 8.42 -176.20 -1.48 -17.81 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.11 1.15 8.07 -2.38 -0.02 1.13 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.13 5.28 7.54 -2.91 -0.02 5.26 16 36 H 0.13 6.51 5.83 -2.91 -0.02 6.50 16 37 H 0.29 15.50 8.31 -92.70 -0.77 14.73 16 38 H 0.17 6.86 8.06 -2.91 -0.02 6.83 16 Total: -1.00 -77.41 337.20 5.63 -71.78 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 1.12 Total: 13.03 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 4.97 Total: -22.75 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -2.97 Total: -92.51 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.19 Total: -12.37 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.73 Total: -4.08 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.96 Total: 46.90 kcal Total: -77.41 5.63 -71.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242052087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.238 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds