Wall clock time and date at job start Tue Mar 31 2020 13:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31255 * 118.49207 * 2 1 4 4 C 1.34014 * 120.49962 * 180.28178 * 3 2 1 5 5 C 1.40124 * 121.97977 * 179.76999 * 4 3 2 6 6 C 1.36528 * 119.56095 * 179.72169 * 5 4 3 7 7 F 1.35102 * 119.50664 * 180.02562 * 6 5 4 8 8 C 1.39526 * 120.98650 * 359.97438 * 6 5 4 9 9 C 1.36294 * 120.88960 * 0.02562 * 8 6 5 10 10 C 1.39972 * 119.52820 * 0.02562 * 9 8 6 11 11 C 1.41667 * 122.10760 * 180.02562 * 10 9 8 12 12 C 1.47793 * 120.93467 * 359.93605 * 11 10 9 13 13 C 1.39556 * 120.18477 * 309.87535 * 12 11 10 14 14 C 1.37886 * 119.92537 * 180.02562 * 13 12 11 15 15 C 1.38537 * 120.30783 * 0.02562 * 14 13 12 16 16 C 1.38068 * 120.38154 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.06211 * 359.67678 * 16 15 14 18 18 O 1.35577 * 120.15385 * 180.30105 * 17 16 15 19 19 C 1.34799 * 117.00054 * 5.76155 * 18 17 16 20 20 H 1.08008 * 119.99948 * 5.45044 * 19 18 17 21 21 C 1.38688 * 120.00192 * 185.45122 * 19 18 17 22 22 N 1.31535 * 119.99893 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 119.99928 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47132 * 89.99995 * 23 21 19 25 25 H 1.48505 * 109.47223 * 210.00221 * 23 21 19 26 26 H 1.48497 * 109.47359 * 330.00252 * 23 21 19 27 27 N 1.32219 * 118.49378 * 179.76377 * 2 1 3 28 28 H 1.09001 * 109.46862 * 270.23129 * 1 2 3 29 29 H 1.08996 * 109.47030 * 30.23298 * 1 2 3 30 30 H 1.08999 * 109.46543 * 150.23828 * 1 2 3 31 31 H 1.07999 * 120.21815 * 359.71022 * 5 4 3 32 32 H 1.08009 * 119.55262 * 180.02562 * 8 6 5 33 33 H 1.08000 * 120.23789 * 180.02562 * 9 8 6 34 34 H 1.07995 * 120.04265 * 0.03266 * 13 12 11 35 35 H 1.07995 * 119.84929 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.81145 * 179.97438 * 15 14 13 37 37 H 1.07997 * 119.97022 * 179.97438 * 16 15 14 38 38 H 0.97003 * 119.99466 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1332 1.1536 0.0000 4 6 3.4725 1.2005 -0.0057 5 6 4.1725 2.4144 -0.0106 6 6 5.5377 2.4046 -0.0106 7 9 6.2115 3.5756 -0.0148 8 6 6.2475 1.2034 -0.0051 9 6 5.5964 0.0060 -0.0002 10 6 4.1969 -0.0183 -0.0012 11 6 3.4649 -1.2312 0.0042 12 6 4.1576 -2.5367 0.0099 13 6 5.1695 -2.7980 -0.9149 14 6 5.8120 -4.0181 -0.9052 15 6 5.4574 -4.9875 0.0187 16 6 4.4574 -4.7429 0.9387 17 6 3.8046 -3.5180 0.9469 18 8 2.8266 -3.2736 1.8534 19 6 2.6163 -4.2144 2.7955 20 1 3.2711 -5.0711 2.8588 21 6 1.5592 -4.0825 3.6835 22 7 1.3544 -5.0004 4.6032 23 14 0.4272 -2.6007 3.5745 24 1 -0.7030 -2.9073 2.6612 25 1 -0.1006 -2.2805 4.9252 26 1 1.1851 -1.4362 3.0504 27 7 2.1378 -1.1620 0.0048 28 1 -0.3633 0.0041 1.0277 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3632 -0.8921 -0.5101 31 1 3.6356 3.3515 -0.0147 32 1 7.3274 1.2227 -0.0047 33 1 6.1563 -0.9175 0.0044 34 1 5.4493 -2.0456 -1.6373 35 1 6.5951 -4.2189 -1.6211 36 1 5.9656 -5.9405 0.0189 37 1 4.1860 -5.5036 1.6557 38 1 0.6152 -4.9079 5.2245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:00 Heat of formation + Delta-G solvation = 22.521151 kcal Electronic energy + Delta-G solvation = -26595.031919 eV Core-core repulsion = 22703.910869 eV Total energy + Delta-G solvation = -3891.121051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.11551 -41.23849 -39.31453 -37.53148 -36.82801 -34.36809 -32.58611 -32.11673 -30.75469 -30.08961 -29.27756 -28.10869 -25.50222 -24.62413 -23.20354 -22.80678 -21.54618 -20.87764 -18.81932 -18.09307 -17.97908 -17.42279 -16.65126 -16.05797 -15.86418 -15.58328 -15.16297 -14.86892 -14.40906 -14.32473 -14.03912 -13.89025 -13.76192 -13.38698 -12.97224 -12.93240 -12.87407 -12.52510 -12.33103 -12.24117 -11.91967 -11.72249 -11.44628 -11.22374 -10.98379 -10.92025 -10.73808 -10.58353 -10.28949 -9.65786 -9.04069 -8.98107 -8.92820 -8.67230 -8.17869 -7.55241 -6.60286 -4.24314 0.15965 0.70954 1.50137 2.04772 2.13029 2.85772 3.14524 3.18629 3.34679 3.81505 4.02114 4.12742 4.13350 4.23039 4.31608 4.53458 4.59626 4.66275 4.77446 4.93579 5.05308 5.21798 5.34466 5.40863 5.57251 5.61069 5.71054 5.76354 5.80425 5.86744 5.88076 5.99128 6.00695 6.10579 6.25808 6.40937 6.52919 6.66186 6.79785 6.92601 7.05411 7.27824 7.36030 7.57346 7.82096 8.39850 8.74121 9.35011 10.45691 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.005444 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.628757 B = 5142.274494 C = 6629.765021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.343 3.657 3 N -0.533 5.533 4 C 0.194 3.806 5 C -0.153 4.153 6 C 0.140 3.860 7 F -0.135 7.135 8 C -0.174 4.174 9 C -0.027 4.027 10 C -0.181 4.181 11 C 0.313 3.687 12 C -0.157 4.157 13 C -0.047 4.047 14 C -0.210 4.210 15 C -0.054 4.054 16 C -0.220 4.220 17 C 0.195 3.805 18 O -0.185 6.185 19 C -0.391 4.391 20 H 0.110 0.890 21 C 0.071 3.929 22 N -0.866 5.866 23 Si 0.903 3.097 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.259 1.259 27 N -0.510 5.510 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.151 0.849 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 8.778 -10.009 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 N -0.250 5.250 4 C 0.066 3.934 5 C -0.173 4.173 6 C 0.118 3.882 7 F -0.114 7.114 8 C -0.193 4.193 9 C -0.047 4.047 10 C -0.185 4.185 11 C 0.157 3.843 12 C -0.160 4.160 13 C -0.066 4.066 14 C -0.229 4.229 15 C -0.073 4.073 16 C -0.239 4.239 17 C 0.138 3.862 18 O -0.086 6.086 19 C -0.466 4.466 20 H 0.127 0.873 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.728 3.272 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.183 1.183 27 N -0.224 5.224 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.433 9.096 -9.729 14.384 hybrid contribution 0.487 0.588 0.259 0.806 sum 5.920 9.684 -9.470 14.782 Atomic orbital electron populations 1.20627 0.86031 1.03999 1.03964 1.23198 0.98100 0.83152 0.88016 1.68566 1.07805 1.29598 1.19004 1.18424 0.89732 0.91664 0.93603 1.20465 0.91968 0.98322 1.06526 1.17393 0.89673 0.81368 0.99770 1.91518 1.80361 1.45969 1.93549 1.20897 1.01231 0.90801 1.06387 1.21038 0.92411 0.98568 0.92662 1.19507 0.95832 0.95002 1.08189 1.20345 0.88442 0.91563 0.83906 1.17335 1.03360 0.91893 1.03389 1.20713 0.93120 0.96923 0.95846 1.20555 1.04547 0.94684 1.03145 1.20984 0.94887 0.98126 0.93303 1.21282 1.00820 0.98054 1.03712 1.18950 0.87964 0.91407 0.87851 1.83632 1.45503 1.44213 1.35212 1.20860 1.15072 1.03442 1.07185 0.87271 1.24469 0.96537 0.98054 0.94407 1.69629 1.30371 1.33179 1.17010 0.86200 0.80870 0.82723 0.77434 1.19178 1.20854 1.18322 1.68483 1.09574 1.28844 1.15469 0.89685 0.89692 0.89327 0.83447 0.84012 0.83175 0.86364 0.86646 0.86644 0.84306 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 10.28 36.01 0.37 -0.94 16 2 C 0.34 6.44 7.62 -157.29 -1.20 5.24 16 3 N -0.53 -9.69 10.32 -8.81 -0.09 -9.78 16 4 C 0.19 3.33 6.61 -84.85 -0.56 2.77 16 5 C -0.15 -2.18 9.97 -39.49 -0.39 -2.57 16 6 C 0.14 1.80 7.24 -39.72 -0.29 1.51 16 7 F -0.14 -1.66 17.24 2.25 0.04 -1.62 16 8 C -0.17 -2.07 9.93 -39.80 -0.40 -2.46 16 9 C -0.03 -0.37 8.69 -39.63 -0.34 -0.71 16 10 C -0.18 -3.09 5.74 -106.58 -0.61 -3.70 16 11 C 0.31 6.12 6.07 -82.20 -0.50 5.62 16 12 C -0.16 -2.99 5.25 -104.76 -0.55 -3.54 16 13 C -0.05 -0.71 7.72 -39.22 -0.30 -1.01 16 14 C -0.21 -3.00 10.03 -39.60 -0.40 -3.40 16 15 C -0.05 -0.85 10.03 -39.53 -0.40 -1.25 16 16 C -0.22 -4.30 9.13 -39.44 -0.36 -4.66 16 17 C 0.19 4.26 6.64 -38.64 -0.26 4.00 16 18 O -0.18 -4.68 7.65 0.67 0.01 -4.68 16 19 C -0.39 -10.50 9.90 30.90 0.31 -10.20 16 20 H 0.11 2.95 5.53 -52.48 -0.29 2.66 16 21 C 0.07 1.93 5.49 -17.51 -0.10 1.83 16 22 N -0.87 -24.11 13.96 55.48 0.77 -23.33 16 23 Si 0.90 21.68 28.62 -169.99 -4.86 16.82 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.26 -6.47 7.11 56.52 0.40 -6.06 16 27 N -0.51 -10.61 9.74 -7.03 -0.07 -10.68 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.15 1.84 5.79 -52.49 -0.30 1.54 16 34 H 0.12 1.49 7.33 -52.49 -0.38 1.10 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.14 2.85 5.71 -52.49 -0.30 2.55 16 38 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -29.93 334.50 -8.51 -38.45 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.37 Total: 3.26 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -5.97 Total: -13.47 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.62 Total: -43.80 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: 0.01 Total: -4.68 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.93 -8.51 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.966 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds