Wall clock time and date at job start Tue Mar 31 2020 13:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31255 * 118.49207 * 2 1 4 4 C 1.34014 * 120.49962 * 180.28178 * 3 2 1 5 5 C 1.40124 * 121.97977 * 179.76999 * 4 3 2 6 6 C 1.36528 * 119.56095 * 179.72169 * 5 4 3 7 7 F 1.35102 * 119.50664 * 180.02562 * 6 5 4 8 8 C 1.39526 * 120.98650 * 359.97438 * 6 5 4 9 9 C 1.36294 * 120.88960 * 0.02562 * 8 6 5 10 10 C 1.39972 * 119.52820 * 0.02562 * 9 8 6 11 11 C 1.41667 * 122.10760 * 180.02562 * 10 9 8 12 12 C 1.47793 * 120.93467 * 359.93605 * 11 10 9 13 13 C 1.39556 * 120.18477 * 309.87535 * 12 11 10 14 14 C 1.37886 * 119.92537 * 180.02562 * 13 12 11 15 15 C 1.38537 * 120.30783 * 0.02562 * 14 13 12 16 16 C 1.38068 * 120.38154 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.06211 * 359.67678 * 16 15 14 18 18 O 1.35577 * 120.15385 * 180.30105 * 17 16 15 19 19 C 1.34799 * 117.00054 * 5.76155 * 18 17 16 20 20 H 1.08008 * 119.99948 * 5.45044 * 19 18 17 21 21 C 1.38688 * 120.00192 * 185.45122 * 19 18 17 22 22 N 1.31535 * 119.99893 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 119.99928 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47132 * 89.99995 * 23 21 19 25 25 H 1.48505 * 109.47223 * 210.00221 * 23 21 19 26 26 H 1.48497 * 109.47359 * 330.00252 * 23 21 19 27 27 N 1.32219 * 118.49378 * 179.76377 * 2 1 3 28 28 H 1.09001 * 109.46862 * 270.23129 * 1 2 3 29 29 H 1.08996 * 109.47030 * 30.23298 * 1 2 3 30 30 H 1.08999 * 109.46543 * 150.23828 * 1 2 3 31 31 H 1.07999 * 120.21815 * 359.71022 * 5 4 3 32 32 H 1.08009 * 119.55262 * 180.02562 * 8 6 5 33 33 H 1.08000 * 120.23789 * 180.02562 * 9 8 6 34 34 H 1.07995 * 120.04265 * 0.03266 * 13 12 11 35 35 H 1.07995 * 119.84929 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.81145 * 179.97438 * 15 14 13 37 37 H 1.07997 * 119.97022 * 179.97438 * 16 15 14 38 38 H 0.97003 * 119.99466 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1332 1.1536 0.0000 4 6 3.4725 1.2005 -0.0057 5 6 4.1725 2.4144 -0.0106 6 6 5.5377 2.4046 -0.0106 7 9 6.2115 3.5756 -0.0148 8 6 6.2475 1.2034 -0.0051 9 6 5.5964 0.0060 -0.0002 10 6 4.1969 -0.0183 -0.0012 11 6 3.4649 -1.2312 0.0042 12 6 4.1576 -2.5367 0.0099 13 6 5.1695 -2.7980 -0.9149 14 6 5.8120 -4.0181 -0.9052 15 6 5.4574 -4.9875 0.0187 16 6 4.4574 -4.7429 0.9387 17 6 3.8046 -3.5180 0.9469 18 8 2.8266 -3.2736 1.8534 19 6 2.6163 -4.2144 2.7955 20 1 3.2711 -5.0711 2.8588 21 6 1.5592 -4.0825 3.6835 22 7 1.3544 -5.0004 4.6032 23 14 0.4272 -2.6007 3.5745 24 1 -0.7030 -2.9073 2.6612 25 1 -0.1006 -2.2805 4.9252 26 1 1.1851 -1.4362 3.0504 27 7 2.1378 -1.1620 0.0048 28 1 -0.3633 0.0041 1.0277 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3632 -0.8921 -0.5101 31 1 3.6356 3.3515 -0.0147 32 1 7.3274 1.2227 -0.0047 33 1 6.1563 -0.9175 0.0044 34 1 5.4493 -2.0456 -1.6373 35 1 6.5951 -4.2189 -1.6211 36 1 5.9656 -5.9405 0.0189 37 1 4.1860 -5.5036 1.6557 38 1 0.6152 -4.9079 5.2245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243580805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:59 Heat of formation + Delta-G solvation = 5.910685 kcal Electronic energy + Delta-G solvation = -26595.752203 eV Core-core repulsion = 22703.910869 eV Total energy + Delta-G solvation = -3891.841335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.13776 -42.52806 -40.85551 -38.72352 -38.35630 -35.69440 -34.52158 -33.33053 -31.97986 -31.39725 -30.74565 -29.29361 -27.34054 -25.93748 -24.44019 -23.98297 -23.05557 -22.24508 -20.06071 -19.79649 -19.41079 -18.80185 -17.91090 -17.18913 -16.97354 -16.93149 -16.63964 -16.32592 -15.81749 -15.71623 -15.60200 -15.25326 -15.19080 -14.49081 -14.34376 -14.27209 -14.18668 -14.11757 -13.90521 -13.37264 -13.23988 -13.03305 -12.81580 -12.69158 -12.57272 -12.36409 -12.13325 -12.03933 -11.82501 -11.44181 -10.98061 -10.33365 -10.15596 -9.93782 -9.45995 -9.06863 -8.58360 -6.26580 -1.07541 -0.50023 0.20055 0.63624 0.81733 1.20569 1.25648 1.41586 1.69842 2.19656 2.63931 2.65630 2.80958 2.86111 2.96050 3.02967 3.16050 3.35029 3.47308 3.74231 3.90918 4.02891 4.13274 4.18093 4.31079 4.41055 4.53617 4.54254 4.57781 4.69749 4.76946 4.80049 4.81507 4.91188 4.98052 5.08178 5.29331 5.33804 5.52991 5.53732 5.64651 5.70788 5.83349 5.96882 6.15035 6.77836 7.04581 7.54730 8.52662 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.005444 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.628757 B = 5142.274494 C = 6629.765021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.318 3.682 3 N -0.537 5.537 4 C 0.169 3.831 5 C -0.159 4.159 6 C 0.153 3.847 7 F -0.127 7.127 8 C -0.149 4.149 9 C -0.033 4.033 10 C -0.189 4.189 11 C 0.289 3.711 12 C -0.155 4.155 13 C -0.041 4.041 14 C -0.176 4.176 15 C -0.048 4.048 16 C -0.240 4.240 17 C 0.158 3.842 18 O -0.223 6.223 19 C -0.393 4.393 20 H 0.091 0.909 21 C 0.023 3.977 22 N -0.913 5.913 23 Si 0.956 3.044 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.279 1.279 27 N -0.545 5.545 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.184 0.816 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.151 0.849 37 H 0.116 0.884 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 10.535 -12.897 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.253 5.253 4 C 0.041 3.959 5 C -0.179 4.179 6 C 0.130 3.870 7 F -0.105 7.105 8 C -0.167 4.167 9 C -0.053 4.053 10 C -0.193 4.193 11 C 0.133 3.867 12 C -0.158 4.158 13 C -0.060 4.060 14 C -0.194 4.194 15 C -0.066 4.066 16 C -0.260 4.260 17 C 0.106 3.894 18 O -0.128 6.128 19 C -0.470 4.470 20 H 0.108 0.892 21 C -0.177 4.177 22 N -0.553 5.553 23 Si 0.780 3.220 24 H -0.185 1.185 25 H -0.196 1.196 26 H -0.205 1.205 27 N -0.259 5.259 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.177 0.823 32 H 0.201 0.799 33 H 0.185 0.815 34 H 0.173 0.827 35 H 0.185 0.815 36 H 0.169 0.831 37 H 0.133 0.867 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.915 10.866 -12.664 18.919 hybrid contribution -0.154 0.206 0.796 0.836 sum 8.761 11.071 -11.868 18.444 Atomic orbital electron populations 1.20716 0.84238 1.05379 1.04057 1.23718 0.99438 0.82967 0.88816 1.68579 1.08739 1.29288 1.18735 1.18816 0.89664 0.92840 0.94605 1.20585 0.92837 0.97779 1.06698 1.17451 0.89185 0.82061 0.98269 1.91553 1.80008 1.45679 1.93260 1.21295 1.03132 0.89329 1.02913 1.21198 0.90767 1.00136 0.93153 1.19669 0.97425 0.93912 1.08326 1.20631 0.88592 0.92668 0.84770 1.17745 1.03812 0.91220 1.03002 1.21193 0.91481 0.98354 0.94995 1.21187 1.03570 0.92872 1.01784 1.21414 0.93180 1.00134 0.91883 1.21325 1.02633 0.97048 1.04963 1.19577 0.87972 0.93171 0.88675 1.83605 1.48330 1.44158 1.36683 1.20772 1.14721 1.03298 1.08166 0.89154 1.25033 0.97903 1.00085 0.94640 1.69691 1.31896 1.34972 1.18710 0.85428 0.79362 0.79561 0.77666 1.18505 1.19598 1.20469 1.68448 1.10787 1.30140 1.16562 0.90119 0.87115 0.89115 0.82342 0.79902 0.81458 0.82679 0.81514 0.83138 0.86659 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.62 10.28 71.24 0.73 -1.89 16 2 C 0.32 12.24 7.62 138.78 1.06 13.30 16 3 N -0.54 -19.57 10.32 -181.80 -1.88 -21.44 16 4 C 0.17 5.62 6.61 40.15 0.27 5.88 16 5 C -0.16 -4.19 9.97 22.33 0.22 -3.96 16 6 C 0.15 3.33 7.24 22.18 0.16 3.49 16 7 F -0.13 -2.56 17.24 44.97 0.78 -1.79 16 8 C -0.15 -2.78 9.93 22.13 0.22 -2.56 16 9 C -0.03 -0.77 8.69 22.24 0.19 -0.58 16 10 C -0.19 -6.20 5.74 -21.13 -0.12 -6.32 16 11 C 0.29 11.28 6.07 42.36 0.26 11.54 16 12 C -0.16 -5.77 5.25 -19.95 -0.10 -5.88 16 13 C -0.04 -1.08 7.72 22.50 0.17 -0.91 16 14 C -0.18 -4.02 10.03 22.26 0.22 -3.80 16 15 C -0.05 -1.35 10.03 22.30 0.22 -1.13 16 16 C -0.24 -9.56 9.13 22.36 0.20 -9.36 16 17 C 0.16 7.12 6.64 22.88 0.15 7.27 16 18 O -0.22 -12.01 7.65 -20.52 -0.16 -12.17 16 19 C -0.39 -22.73 9.90 67.93 0.67 -22.06 16 20 H 0.09 5.34 5.53 -2.91 -0.02 5.32 16 21 C 0.02 1.35 5.49 84.84 0.47 1.82 16 22 N -0.91 -54.01 13.96 21.62 0.30 -53.71 16 23 Si 0.96 47.58 28.62 68.60 1.96 49.55 16 24 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 27 N -0.54 -23.37 9.74 -176.15 -1.72 -25.08 16 28 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 32 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.17 3.32 5.79 -2.91 -0.02 3.30 16 34 H 0.16 2.99 7.33 -2.91 -0.02 2.97 16 35 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.12 5.08 5.71 -2.91 -0.02 5.06 16 38 H 0.28 15.58 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -72.43 334.50 5.42 -67.01 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.13 Total: 12.77 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 5.00 Total: -15.15 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -3.29 Total: -100.23 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.16 Total: -12.17 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.96 Total: 49.55 kcal Total: -72.43 5.42 -67.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.925 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds