Wall clock time and date at job start Tue Mar 31 2020 13:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31228 * 118.49014 * 2 1 4 4 C 1.33988 * 120.51238 * 179.97438 * 3 2 1 5 5 C 1.40239 * 121.97710 * 179.97438 * 4 3 2 6 6 C 1.36253 * 119.60433 * 180.02562 * 5 4 3 7 7 C 1.39481 * 121.01613 * 359.97438 * 6 5 4 8 8 F 1.35098 * 119.56383 * 180.27644 * 7 6 5 9 9 C 1.36566 * 120.86633 * 0.02562 * 7 6 5 10 10 C 1.39896 * 119.48954 * 359.97438 * 9 7 6 11 11 C 1.41723 * 122.12960 * 179.97438 * 10 9 7 12 12 C 1.47852 * 120.93305 * 0.02562 * 11 10 9 13 13 C 1.39684 * 120.06573 * 224.00187 * 12 11 10 14 14 C 1.37716 * 119.92619 * 179.76434 * 13 12 11 15 15 C 1.39094 * 120.07333 * 0.52201 * 14 13 12 16 16 O 1.35613 * 119.93539 * 179.76194 * 15 14 13 17 17 C 1.34804 * 117.00381 * 185.71449 * 16 15 14 18 18 H 1.08000 * 119.99713 * 5.38221 * 17 16 15 19 19 C 1.38684 * 119.99983 * 185.38010 * 17 16 15 20 20 N 1.31535 * 120.00243 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00008 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46562 * 60.00424 * 21 19 17 23 23 H 1.48498 * 109.47404 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47111 * 300.00597 * 21 19 17 25 25 C 1.39102 * 120.13714 * 359.73813 * 15 14 13 26 26 C 1.37713 * 120.06945 * 359.97438 * 25 15 14 27 27 N 1.32238 * 118.48806 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47482 * 270.02565 * 1 2 3 29 29 H 1.09004 * 109.46578 * 30.02907 * 1 2 3 30 30 H 1.09000 * 109.46883 * 150.02102 * 1 2 3 31 31 H 1.07996 * 120.20422 * 0.02562 * 5 4 3 32 32 H 1.07994 * 119.48826 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.25642 * 179.97438 * 9 7 6 34 34 H 1.08001 * 120.03837 * 0.03099 * 13 12 11 35 35 H 1.08000 * 119.96797 * 180.23645 * 14 13 12 36 36 H 0.97000 * 119.99375 * 179.97438 * 20 19 17 37 37 H 1.07997 * 119.96387 * 179.97438 * 25 15 14 38 38 H 1.08004 * 120.03251 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1330 1.1534 0.0000 4 6 3.4720 1.2006 0.0005 5 6 4.1723 2.4157 0.0000 6 6 5.5348 2.4074 0.0000 7 6 6.2462 1.2076 0.0011 8 9 7.5969 1.2336 0.0068 9 6 5.5952 0.0071 0.0016 10 6 4.1965 -0.0179 0.0016 11 6 3.4643 -1.2313 0.0016 12 6 4.1574 -2.5372 0.0022 13 6 3.7178 -3.5632 -0.8376 14 6 4.3686 -4.7769 -0.8382 15 6 5.4558 -4.9853 0.0039 16 8 6.0916 -6.1832 0.0044 17 6 7.0601 -6.3616 0.9250 18 1 7.2396 -5.6043 1.6737 19 6 7.8259 -7.5178 0.9105 20 7 7.6076 -8.4400 -0.0017 21 14 9.1685 -7.7648 2.1857 22 1 8.5696 -7.7481 3.5445 23 1 9.8365 -9.0708 1.9547 24 1 10.1670 -6.6715 2.0714 25 6 5.8927 -3.9673 0.8452 26 6 5.2499 -2.7495 0.8463 27 7 2.1378 -1.1623 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 3.6349 3.3525 -0.0004 32 1 6.0721 3.3441 0.0001 33 1 6.1559 -0.9160 0.0020 34 1 2.8711 -3.4035 -1.4887 35 1 4.0316 -5.5694 -1.4900 36 1 8.1436 -9.2484 -0.0119 37 1 6.7369 -4.1323 1.4983 38 1 5.5898 -1.9594 1.4995 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:03 Heat of formation + Delta-G solvation = 18.521470 kcal Electronic energy + Delta-G solvation = -25528.880001 eV Core-core repulsion = 21637.585511 eV Total energy + Delta-G solvation = -3891.294490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.01453 -41.39730 -39.19406 -37.69082 -36.93808 -34.17152 -32.51596 -32.16742 -31.22271 -30.27527 -29.10771 -27.90572 -25.78656 -24.69890 -23.22356 -22.69461 -21.95723 -20.78454 -18.68042 -18.46954 -18.15226 -17.41679 -16.76931 -15.98668 -15.83642 -15.32627 -15.16948 -14.83865 -14.56162 -14.35179 -14.04200 -13.86306 -13.82030 -13.62714 -13.14201 -13.07882 -12.94468 -12.66159 -12.44958 -11.98387 -11.82062 -11.74363 -11.47362 -11.36366 -11.14740 -10.93230 -10.84684 -10.66240 -10.57508 -9.61339 -9.37480 -9.16035 -9.05007 -8.43861 -8.38281 -7.35316 -6.68481 -4.24120 -0.00087 0.53792 1.47522 2.04294 2.17709 2.71170 3.02460 3.03418 3.06453 3.79361 3.86391 3.90834 3.94224 4.06070 4.20192 4.39809 4.48633 4.71286 4.90209 4.93789 5.01944 5.13822 5.29551 5.41017 5.46343 5.51353 5.57881 5.60318 5.65121 5.79759 5.85564 5.88350 5.98706 6.14526 6.32813 6.43368 6.51244 6.64314 6.82513 6.95855 7.03887 7.14896 7.19576 7.53598 7.75932 8.17424 8.75847 9.41537 10.47778 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.003286 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.927508 B = 8518.796729 C =10033.911040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.330 3.670 3 N -0.528 5.528 4 C 0.160 3.840 5 C -0.082 4.082 6 C -0.110 4.110 7 C 0.081 3.919 8 F -0.136 7.136 9 C -0.101 4.101 10 C -0.148 4.148 11 C 0.309 3.691 12 C -0.181 4.181 13 C -0.019 4.019 14 C -0.197 4.197 15 C 0.170 3.830 16 O -0.159 6.159 17 C -0.393 4.393 18 H 0.097 0.903 19 C 0.043 3.957 20 N -0.850 5.850 21 Si 0.944 3.056 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.236 4.236 26 C -0.039 4.039 27 N -0.529 5.529 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.275 0.725 37 H 0.135 0.865 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 17.422 0.492 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 N -0.245 5.245 4 C 0.033 3.967 5 C -0.101 4.101 6 C -0.132 4.132 7 C 0.062 3.938 8 F -0.114 7.114 9 C -0.122 4.122 10 C -0.153 4.153 11 C 0.154 3.846 12 C -0.183 4.183 13 C -0.038 4.038 14 C -0.216 4.216 15 C 0.113 3.887 16 O -0.060 6.060 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.164 4.164 20 N -0.482 5.482 21 Si 0.768 3.232 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.256 4.256 26 C -0.059 4.059 27 N -0.244 5.244 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.175 0.825 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.162 17.107 0.277 18.548 hybrid contribution 1.903 -0.055 0.686 2.024 sum -5.259 17.052 0.964 17.871 Atomic orbital electron populations 1.20570 0.85894 1.03992 1.03760 1.23169 0.98062 0.83271 0.89284 1.68567 1.07920 1.29532 1.18443 1.18906 0.89779 0.92618 0.95441 1.20547 0.92662 0.96994 0.99891 1.21001 0.94522 0.97588 1.00046 1.17380 0.77302 0.94200 1.04955 1.91530 1.28555 1.97364 1.93977 1.21248 0.93588 0.98496 0.98826 1.19199 0.94653 0.95205 1.06269 1.20559 0.88239 0.91959 0.83884 1.17726 1.01465 0.91932 1.07215 1.20633 0.96486 0.90791 0.95913 1.20151 0.98475 0.98367 1.04635 1.19579 0.91240 0.85667 0.92256 1.83945 1.44274 1.27165 1.50576 1.21424 1.11971 1.05741 1.07765 0.88566 1.25395 0.98192 0.94646 0.98143 1.70014 1.38269 1.07777 1.32170 0.85723 0.79523 0.78423 0.79547 1.19201 1.20044 1.19193 1.21059 1.04890 0.93699 1.05940 1.20813 0.92739 0.96382 0.95927 1.68421 1.09489 1.29162 1.17345 0.89726 0.89828 0.89539 0.83519 0.83836 0.82547 0.86223 0.85764 0.91467 0.84779 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.28 36.01 0.37 -0.47 16 2 C 0.33 4.72 7.62 -157.29 -1.20 3.52 16 3 N -0.53 -7.65 10.31 -8.80 -0.09 -7.75 16 4 C 0.16 2.27 6.62 -84.83 -0.56 1.71 16 5 C -0.08 -0.90 10.01 -39.54 -0.40 -1.30 16 6 C -0.11 -1.11 9.92 -39.83 -0.40 -1.51 16 7 C 0.08 1.00 7.24 -39.72 -0.29 0.71 16 8 F -0.14 -1.74 17.25 2.25 0.04 -1.70 16 9 C -0.10 -1.39 8.47 -39.57 -0.33 -1.73 16 10 C -0.15 -2.24 5.72 -106.60 -0.61 -2.85 16 11 C 0.31 5.08 6.44 -82.17 -0.53 4.55 16 12 C -0.18 -3.15 5.41 -104.89 -0.57 -3.71 16 13 C -0.02 -0.33 9.68 -39.23 -0.38 -0.71 16 14 C -0.20 -3.89 9.98 -39.45 -0.39 -4.29 16 15 C 0.17 3.80 6.65 -38.94 -0.26 3.54 16 16 O -0.16 -4.23 9.75 0.54 0.01 -4.23 16 17 C -0.39 -10.24 9.44 30.90 0.29 -9.95 16 18 H 0.10 2.28 5.28 -52.49 -0.28 2.01 16 19 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 20 N -0.85 -23.48 13.67 55.48 0.76 -22.72 16 21 Si 0.94 19.22 29.55 -169.99 -5.02 14.19 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.24 -4.72 9.12 -39.45 -0.36 -5.08 16 26 C -0.04 -0.68 7.65 -39.24 -0.30 -0.98 16 27 N -0.53 -8.54 10.14 -7.01 -0.07 -8.61 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.16 2.21 5.38 -52.49 -0.28 1.93 16 34 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.13 2.64 5.69 -52.49 -0.30 2.34 16 38 H 0.11 1.71 6.73 -52.48 -0.35 1.36 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -29.41 335.77 -8.63 -38.05 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.31 Total: 5.22 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -6.01 Total: -17.52 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.60 Total: -39.08 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: 0.01 Total: -4.23 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.41 -8.63 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.567 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds