Wall clock time and date at job start Tue Mar 31 2020 13:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31228 * 118.49014 * 2 1 4 4 C 1.33988 * 120.51238 * 179.97438 * 3 2 1 5 5 C 1.40239 * 121.97710 * 179.97438 * 4 3 2 6 6 C 1.36253 * 119.60433 * 180.02562 * 5 4 3 7 7 C 1.39481 * 121.01613 * 359.97438 * 6 5 4 8 8 F 1.35098 * 119.56383 * 180.27644 * 7 6 5 9 9 C 1.36566 * 120.86633 * 0.02562 * 7 6 5 10 10 C 1.39896 * 119.48954 * 359.97438 * 9 7 6 11 11 C 1.41723 * 122.12960 * 179.97438 * 10 9 7 12 12 C 1.47852 * 120.93305 * 0.02562 * 11 10 9 13 13 C 1.39684 * 120.06573 * 224.00187 * 12 11 10 14 14 C 1.37716 * 119.92619 * 179.76434 * 13 12 11 15 15 C 1.39094 * 120.07333 * 0.52201 * 14 13 12 16 16 O 1.35613 * 119.93539 * 179.76194 * 15 14 13 17 17 C 1.34804 * 117.00381 * 185.71449 * 16 15 14 18 18 H 1.08000 * 119.99713 * 5.38221 * 17 16 15 19 19 C 1.38684 * 119.99983 * 185.38010 * 17 16 15 20 20 N 1.31535 * 120.00243 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00008 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46562 * 60.00424 * 21 19 17 23 23 H 1.48498 * 109.47404 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47111 * 300.00597 * 21 19 17 25 25 C 1.39102 * 120.13714 * 359.73813 * 15 14 13 26 26 C 1.37713 * 120.06945 * 359.97438 * 25 15 14 27 27 N 1.32238 * 118.48806 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47482 * 270.02565 * 1 2 3 29 29 H 1.09004 * 109.46578 * 30.02907 * 1 2 3 30 30 H 1.09000 * 109.46883 * 150.02102 * 1 2 3 31 31 H 1.07996 * 120.20422 * 0.02562 * 5 4 3 32 32 H 1.07994 * 119.48826 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.25642 * 179.97438 * 9 7 6 34 34 H 1.08001 * 120.03837 * 0.03099 * 13 12 11 35 35 H 1.08000 * 119.96797 * 180.23645 * 14 13 12 36 36 H 0.97000 * 119.99375 * 179.97438 * 20 19 17 37 37 H 1.07997 * 119.96387 * 179.97438 * 25 15 14 38 38 H 1.08004 * 120.03251 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1330 1.1534 0.0000 4 6 3.4720 1.2006 0.0005 5 6 4.1723 2.4157 0.0000 6 6 5.5348 2.4074 0.0000 7 6 6.2462 1.2076 0.0011 8 9 7.5969 1.2336 0.0068 9 6 5.5952 0.0071 0.0016 10 6 4.1965 -0.0179 0.0016 11 6 3.4643 -1.2313 0.0016 12 6 4.1574 -2.5372 0.0022 13 6 3.7178 -3.5632 -0.8376 14 6 4.3686 -4.7769 -0.8382 15 6 5.4558 -4.9853 0.0039 16 8 6.0916 -6.1832 0.0044 17 6 7.0601 -6.3616 0.9250 18 1 7.2396 -5.6043 1.6737 19 6 7.8259 -7.5178 0.9105 20 7 7.6076 -8.4400 -0.0017 21 14 9.1685 -7.7648 2.1857 22 1 8.5696 -7.7481 3.5445 23 1 9.8365 -9.0708 1.9547 24 1 10.1670 -6.6715 2.0714 25 6 5.8927 -3.9673 0.8452 26 6 5.2499 -2.7495 0.8463 27 7 2.1378 -1.1623 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 3.6349 3.3525 -0.0004 32 1 6.0721 3.3441 0.0001 33 1 6.1559 -0.9160 0.0020 34 1 2.8711 -3.4035 -1.4887 35 1 4.0316 -5.5694 -1.4900 36 1 8.1436 -9.2484 -0.0119 37 1 6.7369 -4.1323 1.4983 38 1 5.5898 -1.9594 1.4995 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586401.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:02 Heat of formation + Delta-G solvation = 2.903877 kcal Electronic energy + Delta-G solvation = -25529.557231 eV Core-core repulsion = 21637.585511 eV Total energy + Delta-G solvation = -3891.971719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.03527 -42.52253 -40.83512 -38.71439 -38.52159 -35.44872 -34.29850 -33.20866 -32.39332 -31.65179 -30.56461 -28.87519 -27.55509 -25.92747 -24.38886 -23.92058 -23.38409 -22.19389 -20.04253 -19.67446 -19.47843 -18.93587 -18.05177 -17.14699 -16.89335 -16.54625 -16.49314 -16.23284 -16.04108 -15.67890 -15.60469 -15.19265 -14.98085 -14.72765 -14.54237 -14.26007 -14.07035 -13.89885 -13.62299 -13.29970 -13.19439 -12.95098 -12.76885 -12.62658 -12.56439 -12.37918 -12.16485 -12.05407 -11.91872 -11.32688 -10.84005 -10.36966 -10.33455 -9.96626 -9.54271 -8.91515 -8.53354 -6.20487 -1.10991 -0.50215 0.22175 0.47708 0.83363 1.36391 1.46140 1.52090 1.69201 2.14652 2.61618 2.76885 2.86634 2.92283 3.02941 3.06753 3.27165 3.36359 3.41829 3.77358 3.88404 3.93395 4.05872 4.13248 4.29781 4.41993 4.54783 4.59281 4.69738 4.73594 4.78529 4.84926 4.89109 4.92297 4.99202 5.05936 5.10628 5.31168 5.43220 5.48424 5.54466 5.57560 5.92581 5.94367 5.97797 6.90671 7.02777 7.65380 8.68316 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.003286 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.927508 B = 8518.796729 C =10033.911040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.313 3.687 3 N -0.523 5.523 4 C 0.143 3.857 5 C -0.072 4.072 6 C -0.094 4.094 7 C 0.090 3.910 8 F -0.137 7.137 9 C -0.123 4.123 10 C -0.155 4.155 11 C 0.287 3.713 12 C -0.158 4.158 13 C -0.016 4.016 14 C -0.201 4.201 15 C 0.141 3.859 16 O -0.214 6.214 17 C -0.418 4.418 18 H 0.108 0.892 19 C -0.016 4.016 20 N -0.912 5.912 21 Si 1.017 2.983 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.255 1.255 25 C -0.238 4.238 26 C -0.032 4.032 27 N -0.539 5.539 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.184 0.816 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.276 0.724 37 H 0.134 0.866 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 21.976 1.361 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.046 3.954 3 N -0.239 5.239 4 C 0.015 3.985 5 C -0.090 4.090 6 C -0.115 4.115 7 C 0.071 3.929 8 F -0.116 7.116 9 C -0.144 4.144 10 C -0.160 4.160 11 C 0.130 3.870 12 C -0.160 4.160 13 C -0.035 4.035 14 C -0.221 4.221 15 C 0.088 3.912 16 O -0.119 6.119 17 C -0.493 4.493 18 H 0.125 0.875 19 C -0.215 4.215 20 N -0.548 5.548 21 Si 0.836 3.164 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.179 1.179 25 C -0.258 4.258 26 C -0.052 4.052 27 N -0.254 5.254 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.195 0.805 32 H 0.201 0.799 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.930 21.727 1.148 23.158 hybrid contribution 1.836 -0.892 0.328 2.067 sum -6.094 20.835 1.476 21.758 Atomic orbital electron populations 1.20706 0.83092 1.05124 1.04943 1.23897 0.99713 0.82669 0.89165 1.68655 1.08159 1.29468 1.17601 1.19379 0.89903 0.93467 0.95787 1.20909 0.92946 0.96890 0.98274 1.21369 0.94251 0.98130 0.97789 1.17596 0.77223 0.94626 1.03448 1.91536 1.28846 1.97390 1.93807 1.21153 0.93238 0.99035 1.00982 1.19198 0.95042 0.95033 1.06711 1.20423 0.88852 0.91784 0.85891 1.18012 1.00373 0.92388 1.05264 1.20860 0.96683 0.89928 0.96054 1.20343 0.98004 0.99418 1.04296 1.20059 0.91878 0.85703 0.93586 1.83927 1.46225 1.29328 1.52379 1.21874 1.12305 1.06544 1.08599 0.87469 1.26606 1.00512 0.94072 1.00321 1.70154 1.40614 1.08870 1.35205 0.84665 0.76358 0.78552 0.76834 1.18086 1.19695 1.17943 1.21152 1.05111 0.94071 1.05423 1.21013 0.92312 0.95878 0.95958 1.68396 1.09353 1.30529 1.17127 0.88365 0.88148 0.88958 0.80466 0.79859 0.83551 0.84065 0.85585 0.91521 0.84864 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.28 71.24 0.73 -0.64 16 2 C 0.31 8.16 7.62 138.79 1.06 9.22 16 3 N -0.52 -13.50 10.31 -181.75 -1.87 -15.37 16 4 C 0.14 3.58 6.62 40.17 0.27 3.84 16 5 C -0.07 -1.24 10.01 22.29 0.22 -1.01 16 6 C -0.09 -1.44 9.92 22.11 0.22 -1.22 16 7 C 0.09 1.94 7.24 22.18 0.16 2.10 16 8 F -0.14 -3.11 17.25 44.97 0.78 -2.34 16 9 C -0.12 -3.15 8.47 22.28 0.19 -2.97 16 10 C -0.16 -4.34 5.72 -21.15 -0.12 -4.46 16 11 C 0.29 8.97 6.44 42.40 0.27 9.24 16 12 C -0.16 -5.38 5.41 -20.03 -0.11 -5.49 16 13 C -0.02 -0.56 9.68 22.50 0.22 -0.35 16 14 C -0.20 -8.25 9.98 22.35 0.22 -8.03 16 15 C 0.14 6.63 6.65 22.68 0.15 6.78 16 16 O -0.21 -12.21 9.75 -20.97 -0.20 -12.42 16 17 C -0.42 -23.03 9.44 67.93 0.64 -22.39 16 18 H 0.11 5.34 5.28 -2.91 -0.02 5.32 16 19 C -0.02 -0.86 5.49 84.84 0.47 -0.39 16 20 N -0.91 -53.76 13.67 21.62 0.30 -53.46 16 21 Si 1.02 40.76 29.55 68.60 2.03 42.79 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 25 C -0.24 -9.76 9.12 22.35 0.20 -9.56 16 26 C -0.03 -1.11 7.65 22.49 0.17 -0.94 16 27 N -0.54 -16.39 10.14 -176.10 -1.79 -18.17 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.15 3.99 5.38 -2.91 -0.02 3.97 16 34 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 35 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 36 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.13 5.41 5.69 -2.91 -0.02 5.40 16 38 H 0.14 4.03 6.73 -2.91 -0.02 4.01 16 Total: -1.00 -68.57 335.77 5.33 -63.24 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.13 Total: 22.00 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 4.97 Total: -26.26 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -3.36 Total: -87.01 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.20 Total: -12.42 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -68.57 5.33 -63.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586401.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.140 kcal (2) G-P(sol) polarization free energy of solvation -68.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds