Wall clock time and date at job start Tue Mar 31 2020 13:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76202 * 99.99968 * 2 1 4 4 N 1.32390 * 119.80043 * 0.02562 * 3 2 1 5 5 C 1.31953 * 121.74596 * 179.97438 * 4 3 2 6 6 C 1.38210 * 121.15730 * 0.03184 * 5 4 3 7 7 C 1.50702 * 120.26379 * 179.97438 * 6 5 4 8 8 C 1.38578 * 119.47729 * 359.69151 * 6 5 4 9 9 C 1.39602 * 118.38628 * 0.54769 * 8 6 5 10 10 C 1.48064 * 120.58182 * 179.75799 * 9 8 6 11 11 C 1.39248 * 120.28353 * 64.73683 * 10 9 8 12 12 C 1.38302 * 120.08938 * 179.97438 * 11 10 9 13 13 C 1.38050 * 120.78345 * 359.97438 * 12 11 10 14 14 C 1.39132 * 120.25269 * 0.02562 * 13 12 11 15 15 N 1.38178 * 132.73608 * 180.02562 * 14 13 12 16 16 H 0.96996 * 124.70794 * 359.97438 * 15 14 13 17 17 C 1.35600 * 110.59100 * 179.97438 * 15 14 13 18 18 C 1.39005 * 109.24161 * 359.97438 * 17 15 14 19 19 C 1.40965 * 126.92689 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00059 * 180.02562 * 19 18 17 21 21 C 1.39668 * 119.99856 * 0.02562 * 19 18 17 22 22 N 1.31087 * 120.00274 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99895 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46941 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46874 * 120.00379 * 23 21 19 26 26 H 1.48501 * 109.47165 * 240.00642 * 23 21 19 27 27 C 1.40242 * 120.28470 * 244.71777 * 10 9 8 28 28 H 1.09001 * 109.46679 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47244 * 300.00150 * 1 2 3 30 30 H 1.09003 * 109.46920 * 60.00509 * 1 2 3 31 31 H 1.07993 * 119.41594 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.46885 * 89.99613 * 7 6 5 33 33 H 1.08999 * 109.47102 * 209.99695 * 7 6 5 34 34 H 1.09001 * 109.46850 * 329.99738 * 7 6 5 35 35 H 1.07991 * 120.80647 * 180.29864 * 8 6 5 36 36 H 1.07993 * 119.95402 * 359.95800 * 11 10 9 37 37 H 1.08001 * 119.60496 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.87818 * 179.97438 * 13 12 11 39 39 H 1.07997 * 125.37370 * 180.27152 * 17 15 14 40 40 H 0.97003 * 119.99871 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0988 2.5827 0.0005 5 6 1.2837 3.8892 0.0010 6 6 2.5550 4.4315 0.0004 7 6 2.7428 5.9268 0.0004 8 6 3.6556 3.5895 0.0057 9 6 3.4364 2.2108 -0.0002 10 6 4.5770 1.2667 -0.0003 11 6 5.4419 1.2102 1.0896 12 6 6.5057 0.3265 1.0854 13 6 6.7262 -0.5088 0.0087 14 6 5.8767 -0.4719 -1.0926 15 7 5.8530 -1.1739 -2.2825 16 1 6.4939 -1.8574 -2.5334 17 6 4.8094 -0.7749 -3.0509 18 6 4.1011 0.2169 -2.3824 19 6 2.9518 0.8921 -2.8408 20 1 2.4887 1.6491 -2.2253 21 6 2.4118 0.5821 -4.0910 22 7 2.9735 -0.3371 -4.8379 23 14 0.8890 1.4774 -4.6988 24 1 0.4521 2.4613 -3.6759 25 1 1.2043 2.1868 -5.9647 26 1 -0.1993 0.4960 -4.9390 27 6 4.7954 0.4215 -1.0979 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.4266 4.5462 0.0019 32 1 2.7886 6.2872 1.0281 33 1 3.6709 6.1764 -0.5138 34 1 1.9048 6.3982 -0.5130 35 1 4.6584 3.9901 0.0102 36 1 5.2818 1.8575 1.9391 37 1 7.1719 0.2895 1.9347 38 1 7.5618 -1.1930 0.0207 39 1 4.5643 -1.1691 -4.0260 40 1 2.5983 -0.5527 -5.7060 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244881691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:05 Heat of formation + Delta-G solvation = 81.888910 kcal Electronic energy + Delta-G solvation = -25125.019895 eV Core-core repulsion = 21802.686400 eV Total energy + Delta-G solvation = -3322.333495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01326 -39.22064 -35.85117 -33.65071 -33.23299 -32.42157 -29.76163 -28.47020 -28.20209 -27.55796 -26.90218 -24.79074 -23.31763 -22.25196 -20.61131 -20.49179 -19.34379 -17.51672 -16.94501 -16.10261 -15.80018 -15.39519 -14.75987 -14.48730 -14.28441 -14.05061 -13.62571 -13.24392 -13.13160 -13.08783 -12.96241 -12.76752 -12.47755 -12.33641 -12.33200 -11.94246 -11.56961 -11.32296 -11.19198 -11.04806 -10.84258 -10.58252 -10.42803 -9.87347 -9.73491 -9.62495 -9.42034 -9.17065 -9.07643 -8.72534 -8.21554 -7.04867 -6.66289 -6.47248 -6.41349 -3.87623 1.43038 1.70788 2.19905 2.29674 2.60263 2.96222 3.10817 3.20163 3.28232 4.15257 4.16509 4.26529 4.58380 4.74584 4.96459 5.17556 5.25402 5.41086 5.54877 5.64759 5.67949 5.70052 5.72511 5.73385 5.78251 5.95688 6.04275 6.08425 6.24814 6.31427 6.44998 6.51517 6.63522 6.67837 6.83257 7.08391 7.15990 7.23368 7.38356 7.48385 7.64003 7.91110 8.07010 8.28517 8.36450 8.74334 9.09358 9.23278 9.27534 10.56947 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.008743 B = 0.008325 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.951590 B = 3362.677553 C = 4932.968727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.007 6.007 3 C 0.141 3.859 4 N -0.493 5.493 5 C 0.103 3.897 6 C -0.157 4.157 7 C -0.101 4.101 8 C -0.055 4.055 9 C -0.044 4.044 10 C -0.004 4.004 11 C -0.166 4.166 12 C -0.118 4.118 13 C -0.145 4.145 14 C 0.083 3.917 15 N -0.590 5.590 16 H 0.394 0.606 17 C -0.093 4.093 18 C 0.028 3.972 19 C -0.390 4.390 20 H 0.071 0.929 21 C 0.057 3.943 22 N -0.835 5.835 23 Si 0.897 3.103 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.277 1.277 27 C -0.099 4.099 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.192 0.808 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 4.392 8.056 9.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.235 5.765 3 C -0.107 4.107 4 N -0.205 5.205 5 C -0.058 4.058 6 C -0.163 4.163 7 C -0.158 4.158 8 C -0.082 4.082 9 C -0.052 4.052 10 C -0.006 4.006 11 C -0.187 4.187 12 C -0.138 4.138 13 C -0.167 4.167 14 C -0.028 4.028 15 N -0.191 5.191 16 H 0.227 0.773 17 C -0.217 4.217 18 C 0.023 3.977 19 C -0.424 4.424 20 H 0.089 0.911 21 C -0.152 4.152 22 N -0.467 5.467 23 Si 0.724 3.276 24 H -0.188 1.188 25 H -0.205 1.205 26 H -0.203 1.203 27 C -0.106 4.106 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.208 0.792 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.100 2.784 7.692 8.181 hybrid contribution -0.466 1.522 -0.643 1.717 sum -0.567 4.306 7.049 8.280 Atomic orbital electron populations 1.23444 0.97832 1.05013 1.05881 1.86247 1.03503 0.97267 1.89487 1.23134 0.90704 0.98931 0.97978 1.67910 1.33275 1.03872 1.15456 1.22383 0.95723 0.90959 0.96692 1.20603 0.94140 0.96829 1.04740 1.20611 1.02514 0.90893 1.01791 1.21380 0.98760 0.91668 0.96364 1.19261 0.92407 0.93310 1.00261 1.17798 0.93491 0.95396 0.93914 1.20491 0.97394 1.02820 0.97952 1.20261 0.98388 0.97687 0.97436 1.19860 1.00173 1.03012 0.93624 1.18130 0.98424 0.97245 0.89011 1.41566 1.27612 1.35116 1.14844 0.77329 1.23405 0.92311 1.05943 1.00070 1.17935 0.94989 0.96091 0.88718 1.18795 1.07157 1.16696 0.99708 0.91138 1.25485 0.97971 0.95148 0.96595 1.69452 1.38403 1.28250 1.10596 0.86370 0.82081 0.80089 0.79042 1.18820 1.20519 1.20315 1.19279 0.97486 0.97931 0.95925 0.89048 0.90447 0.89767 0.83541 0.91601 0.91624 0.91706 0.84996 0.87716 0.87396 0.88115 0.79179 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.65 101.05 0.97 -1.62 16 2 S -0.01 -0.15 19.14 -107.50 -2.06 -2.21 16 3 C 0.14 2.96 4.79 -16.52 -0.08 2.88 16 4 N -0.49 -9.69 9.13 -11.79 -0.11 -9.79 16 5 C 0.10 1.73 10.84 -17.51 -0.19 1.54 16 6 C -0.16 -2.49 5.89 -104.51 -0.62 -3.11 16 7 C -0.10 -1.15 10.03 36.01 0.36 -0.79 16 8 C -0.05 -0.98 9.56 -38.95 -0.37 -1.35 16 9 C -0.04 -0.90 4.34 -104.56 -0.45 -1.36 16 10 C 0.00 -0.09 4.64 -104.74 -0.49 -0.58 16 11 C -0.17 -3.12 9.74 -39.18 -0.38 -3.50 16 12 C -0.12 -2.08 10.00 -39.63 -0.40 -2.48 16 13 C -0.14 -2.71 10.06 -39.32 -0.40 -3.11 16 14 C 0.08 1.82 7.23 -83.91 -0.61 1.21 16 15 N -0.59 -12.60 5.99 -9.80 -0.06 -12.66 16 16 H 0.39 6.89 8.96 -40.82 -0.37 6.52 16 17 C -0.09 -2.32 10.89 -15.60 -0.17 -2.48 16 18 C 0.03 0.72 5.56 -104.83 -0.58 0.14 16 19 C -0.39 -10.36 7.59 -38.02 -0.29 -10.64 16 20 H 0.07 1.89 4.69 -52.49 -0.25 1.64 16 21 C 0.06 1.47 5.49 -17.34 -0.10 1.38 16 22 N -0.84 -21.71 10.33 55.54 0.57 -21.14 16 23 Si 0.90 20.42 29.56 -169.99 -5.02 15.39 16 24 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 C -0.10 -2.34 5.31 -104.64 -0.56 -2.90 16 28 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.08 1.21 8.12 -51.92 -0.42 0.78 16 30 H 0.08 1.53 8.12 -51.91 -0.42 1.11 16 31 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 39 H 0.19 4.91 5.68 -52.49 -0.30 4.61 16 40 H 0.27 6.54 8.30 -40.82 -0.34 6.21 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -29.49 343.71 -10.52 -40.00 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -4.69 Total: 12.00 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -4.33 Total: -26.77 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.41 Total: -43.60 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.06 Total: -2.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.49 -10.52 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244881691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.894 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds