Wall clock time and date at job start Tue Mar 31 2020 13:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76202 * 99.99968 * 2 1 4 4 N 1.32390 * 119.80043 * 0.02562 * 3 2 1 5 5 C 1.31953 * 121.74596 * 179.97438 * 4 3 2 6 6 C 1.38210 * 121.15730 * 0.03184 * 5 4 3 7 7 C 1.50702 * 120.26379 * 179.97438 * 6 5 4 8 8 C 1.38578 * 119.47729 * 359.69151 * 6 5 4 9 9 C 1.39602 * 118.38628 * 0.54769 * 8 6 5 10 10 C 1.48064 * 120.58182 * 179.75799 * 9 8 6 11 11 C 1.39248 * 120.28353 * 64.73683 * 10 9 8 12 12 C 1.38302 * 120.08938 * 179.97438 * 11 10 9 13 13 C 1.38050 * 120.78345 * 359.97438 * 12 11 10 14 14 C 1.39132 * 120.25269 * 0.02562 * 13 12 11 15 15 N 1.38178 * 132.73608 * 180.02562 * 14 13 12 16 16 H 0.96996 * 124.70794 * 359.97438 * 15 14 13 17 17 C 1.35600 * 110.59100 * 179.97438 * 15 14 13 18 18 C 1.39005 * 109.24161 * 359.97438 * 17 15 14 19 19 C 1.40965 * 126.92689 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00059 * 180.02562 * 19 18 17 21 21 C 1.39668 * 119.99856 * 0.02562 * 19 18 17 22 22 N 1.31087 * 120.00274 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99895 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46941 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46874 * 120.00379 * 23 21 19 26 26 H 1.48501 * 109.47165 * 240.00642 * 23 21 19 27 27 C 1.40242 * 120.28470 * 244.71777 * 10 9 8 28 28 H 1.09001 * 109.46679 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47244 * 300.00150 * 1 2 3 30 30 H 1.09003 * 109.46920 * 60.00509 * 1 2 3 31 31 H 1.07993 * 119.41594 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.46885 * 89.99613 * 7 6 5 33 33 H 1.08999 * 109.47102 * 209.99695 * 7 6 5 34 34 H 1.09001 * 109.46850 * 329.99738 * 7 6 5 35 35 H 1.07991 * 120.80647 * 180.29864 * 8 6 5 36 36 H 1.07993 * 119.95402 * 359.95800 * 11 10 9 37 37 H 1.08001 * 119.60496 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.87818 * 179.97438 * 13 12 11 39 39 H 1.07997 * 125.37370 * 180.27152 * 17 15 14 40 40 H 0.97003 * 119.99871 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0988 2.5827 0.0005 5 6 1.2837 3.8892 0.0010 6 6 2.5550 4.4315 0.0004 7 6 2.7428 5.9268 0.0004 8 6 3.6556 3.5895 0.0057 9 6 3.4364 2.2108 -0.0002 10 6 4.5770 1.2667 -0.0003 11 6 5.4419 1.2102 1.0896 12 6 6.5057 0.3265 1.0854 13 6 6.7262 -0.5088 0.0087 14 6 5.8767 -0.4719 -1.0926 15 7 5.8530 -1.1739 -2.2825 16 1 6.4939 -1.8574 -2.5334 17 6 4.8094 -0.7749 -3.0509 18 6 4.1011 0.2169 -2.3824 19 6 2.9518 0.8921 -2.8408 20 1 2.4887 1.6491 -2.2253 21 6 2.4118 0.5821 -4.0910 22 7 2.9735 -0.3371 -4.8379 23 14 0.8890 1.4774 -4.6988 24 1 0.4521 2.4613 -3.6759 25 1 1.2043 2.1868 -5.9647 26 1 -0.1993 0.4960 -4.9390 27 6 4.7954 0.4215 -1.0979 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.4266 4.5462 0.0019 32 1 2.7886 6.2872 1.0281 33 1 3.6709 6.1764 -0.5138 34 1 1.9048 6.3982 -0.5130 35 1 4.6584 3.9901 0.0102 36 1 5.2818 1.8575 1.9391 37 1 7.1719 0.2895 1.9347 38 1 7.5618 -1.1930 0.0207 39 1 4.5643 -1.1691 -4.0260 40 1 2.5983 -0.5527 -5.7060 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244881691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:05 Heat of formation + Delta-G solvation = 66.996518 kcal Electronic energy + Delta-G solvation = -25125.665678 eV Core-core repulsion = 21802.686400 eV Total energy + Delta-G solvation = -3322.979278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.55453 -40.69449 -37.41929 -35.44214 -34.50171 -33.94616 -31.42399 -29.85594 -29.73389 -29.22820 -28.06547 -26.60178 -24.75695 -23.63741 -22.15492 -22.05621 -21.12208 -18.97509 -18.52195 -17.64803 -17.46386 -17.04744 -16.23916 -16.01810 -15.93067 -15.43458 -15.06162 -14.71760 -14.60401 -14.54659 -14.34542 -14.29417 -14.09107 -13.54014 -13.40912 -13.20821 -13.06390 -13.00602 -12.90649 -12.65097 -12.50106 -12.15087 -11.99876 -11.59591 -11.44864 -11.29611 -11.12118 -10.61369 -10.46458 -10.18539 -9.86736 -8.66416 -8.31462 -8.29869 -8.10680 -5.80193 0.01824 0.31761 0.68402 0.84026 1.05694 1.28766 1.33372 1.44974 1.55020 2.29158 2.38929 2.78102 2.98462 3.15682 3.62158 3.76851 3.96467 4.01099 4.17636 4.28007 4.35067 4.36704 4.38616 4.43118 4.51278 4.73929 4.87169 4.89264 4.91258 4.96440 5.05862 5.18590 5.22011 5.27952 5.39485 5.43728 5.51950 5.73608 5.79587 5.91278 6.05095 6.08543 6.32277 6.62244 6.88938 6.92367 7.26888 7.34920 7.50881 8.67856 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.008743 B = 0.008325 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.951590 B = 3362.677553 C = 4932.968727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.069 6.069 3 C 0.125 3.875 4 N -0.509 5.509 5 C 0.091 3.909 6 C -0.145 4.145 7 C -0.097 4.097 8 C -0.066 4.066 9 C -0.068 4.068 10 C -0.018 4.018 11 C -0.163 4.163 12 C -0.106 4.106 13 C -0.147 4.147 14 C 0.071 3.929 15 N -0.587 5.587 16 H 0.409 0.591 17 C -0.109 4.109 18 C -0.001 4.001 19 C -0.402 4.402 20 H 0.061 0.939 21 C 0.016 3.984 22 N -0.859 5.859 23 Si 0.950 3.050 24 H -0.274 1.274 25 H -0.273 1.273 26 H -0.272 1.272 27 C -0.129 4.129 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.152 0.848 38 H 0.134 0.866 39 H 0.176 0.824 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 6.229 10.032 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.173 5.827 3 C -0.123 4.123 4 N -0.221 5.221 5 C -0.070 4.070 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.093 4.093 9 C -0.076 4.076 10 C -0.019 4.019 11 C -0.183 4.183 12 C -0.125 4.125 13 C -0.168 4.168 14 C -0.040 4.040 15 N -0.191 5.191 16 H 0.245 0.755 17 C -0.234 4.234 18 C -0.007 4.007 19 C -0.435 4.435 20 H 0.079 0.921 21 C -0.190 4.190 22 N -0.492 5.492 23 Si 0.775 3.225 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.136 4.136 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.198 0.802 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.166 0.834 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.152 0.848 39 H 0.193 0.807 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.551 4.614 9.678 10.736 hybrid contribution -0.586 1.059 -1.065 1.612 sum -0.034 5.673 8.613 10.314 Atomic orbital electron populations 1.23386 0.94856 1.06364 1.05630 1.86273 1.06959 0.99243 1.90229 1.22997 0.91214 0.98442 0.99642 1.67872 1.33315 1.05101 1.15848 1.23059 0.97570 0.90441 0.95896 1.21081 0.93045 0.99099 1.01824 1.20712 1.03620 0.87470 1.03664 1.21696 1.00325 0.90952 0.96321 1.19453 0.92181 0.94463 1.01518 1.18062 0.94357 0.95453 0.94036 1.20893 0.96871 1.02908 0.97615 1.20795 0.97926 0.95717 0.98036 1.20279 1.00354 1.03604 0.92573 1.18573 0.98741 0.96909 0.89737 1.41363 1.27362 1.35731 1.14625 0.75506 1.23168 0.93716 1.06421 1.00083 1.18209 0.95418 0.96690 0.90340 1.18847 1.07787 1.16945 0.99961 0.92086 1.26090 1.00129 0.95986 0.96824 1.69541 1.39459 1.29277 1.10938 0.85580 0.79623 0.78969 0.78280 1.19833 1.19829 1.19734 1.19460 0.98319 0.99713 0.96112 0.86913 0.89145 0.91315 0.80238 0.89190 0.90935 0.90009 0.83417 0.85358 0.83044 0.84835 0.80712 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.65 113.37 1.09 -3.50 16 2 S -0.07 -2.94 19.14 -56.49 -1.08 -4.02 16 3 C 0.12 5.30 4.79 85.12 0.41 5.70 16 4 N -0.51 -19.87 9.13 -191.21 -1.74 -21.61 16 5 C 0.09 2.89 10.84 84.67 0.92 3.81 16 6 C -0.15 -4.26 5.89 -19.79 -0.12 -4.38 16 7 C -0.10 -1.87 10.03 71.24 0.71 -1.15 16 8 C -0.07 -2.27 9.56 22.68 0.22 -2.06 16 9 C -0.07 -2.78 4.34 -19.83 -0.09 -2.87 16 10 C -0.02 -0.75 4.64 -19.94 -0.09 -0.84 16 11 C -0.16 -5.75 9.74 22.53 0.22 -5.53 16 12 C -0.11 -3.34 10.00 22.24 0.22 -3.12 16 13 C -0.15 -5.11 10.06 22.44 0.23 -4.89 16 14 C 0.07 3.09 7.23 38.85 0.28 3.37 16 15 N -0.59 -25.54 5.99 -184.93 -1.11 -26.65 16 16 H 0.41 14.44 8.96 -92.71 -0.83 13.61 16 17 C -0.11 -5.66 10.89 84.29 0.92 -4.75 16 18 C 0.00 -0.06 5.56 -20.00 -0.11 -0.17 16 19 C -0.40 -22.19 7.59 23.28 0.18 -22.01 16 20 H 0.06 3.41 4.69 -2.91 -0.01 3.39 16 21 C 0.02 0.83 5.49 85.15 0.47 1.30 16 22 N -0.86 -46.56 10.33 21.79 0.23 -46.33 16 23 Si 0.95 43.16 29.56 68.60 2.03 45.19 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 C -0.13 -6.22 5.31 -19.88 -0.11 -6.32 16 28 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 29 H 0.09 2.81 8.12 -2.40 -0.02 2.79 16 30 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 31 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.15 4.43 8.06 -2.92 -0.02 4.41 16 36 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 37 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 39 H 0.18 9.56 5.68 -2.91 -0.02 9.55 16 40 H 0.27 13.72 8.30 -92.71 -0.77 12.95 16 Total: -1.00 -67.40 343.71 3.92 -63.48 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.26 Total: 37.34 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 5.35 Total: -47.40 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -2.63 Total: -94.59 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -1.08 Total: -4.02 kcal Total: -67.40 3.92 -63.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244881691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.476 kcal (2) G-P(sol) polarization free energy of solvation -67.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds