Wall clock time and date at job start Tue Mar 31 2020 14:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46790 * 2 1 4 4 C 1.53002 * 109.47168 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47410 * 179.97438 * 4 3 2 6 6 C 1.37048 * 120.00283 * 264.44579 * 5 4 3 7 7 H 1.07996 * 120.00049 * 140.38183 * 6 5 4 8 8 C 1.38881 * 119.99655 * 320.38315 * 6 5 4 9 9 N 1.31479 * 120.00287 * 340.51293 * 8 6 5 10 10 Si 1.86801 * 120.00033 * 160.51270 * 8 6 5 11 11 H 1.48501 * 109.46989 * 59.99740 * 10 8 6 12 12 H 1.48498 * 109.47229 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47333 * 300.00201 * 10 8 6 14 14 C 1.34777 * 119.99999 * 84.44477 * 5 4 3 15 15 S 1.71200 * 119.99943 * 0.02562 * 14 5 4 16 16 N 1.34775 * 119.99980 * 180.02562 * 14 5 4 17 17 C 1.40093 * 120.00131 * 182.80797 * 16 14 5 18 18 C 1.38662 * 120.09893 * 39.55492 * 17 16 14 19 19 C 1.38247 * 120.00732 * 179.97438 * 18 17 16 20 20 C 1.38299 * 120.20922 * 359.97438 * 19 18 17 21 21 C 1.38210 * 120.20281 * 0.02562 * 20 19 18 22 22 C 1.38769 * 119.98686 * 359.97438 * 21 20 19 23 23 S 1.76197 * 120.09994 * 180.02562 * 22 21 20 24 24 C 1.81404 * 103.00307 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47039 * 299.99753 * 1 2 3 26 26 H 1.09001 * 109.47077 * 60.00216 * 1 2 3 27 27 H 1.09006 * 109.46789 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47039 * 240.00246 * 2 1 3 29 29 H 1.09001 * 109.47077 * 119.99784 * 2 1 3 30 30 H 1.09004 * 109.47099 * 59.99975 * 3 2 1 31 31 H 1.08997 * 109.47601 * 299.99712 * 3 2 1 32 32 H 1.09004 * 109.46813 * 60.00188 * 4 3 2 33 33 H 1.09001 * 109.47205 * 300.00095 * 4 3 2 34 34 H 0.96999 * 120.00389 * 179.97438 * 9 8 6 35 35 H 0.97007 * 120.00049 * 2.80977 * 16 14 5 36 36 H 1.08002 * 119.99807 * 0.25096 * 18 17 16 37 37 H 1.08003 * 119.89813 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.89795 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.00054 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47141 * 180.02562 * 24 23 22 41 41 H 1.09003 * 109.46702 * 300.00361 * 24 23 22 42 42 H 1.08994 * 109.46766 * 60.00043 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3955 3.4309 -1.1815 7 1 4.1437 4.4680 -1.3468 8 6 5.0610 2.7124 -2.1661 9 7 5.7014 1.6073 -1.8542 10 14 5.0464 3.3160 -3.9339 11 1 5.6581 4.6675 -4.0005 12 1 5.8230 2.3780 -4.7837 13 1 3.6458 3.3821 -4.4228 14 6 4.1759 3.4975 1.1614 15 16 3.7552 2.7389 2.6374 16 7 4.6246 4.7683 1.1608 17 6 4.8028 5.4489 2.3723 18 6 5.3230 4.7850 3.4728 19 6 5.4985 5.4586 4.6673 20 6 5.1572 6.7949 4.7693 21 6 4.6379 7.4651 3.6778 22 6 4.4582 6.7971 2.4748 23 16 3.7971 7.6488 1.0812 24 6 3.5233 9.3246 1.7193 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9287 -0.8892 33 1 3.9330 0.9289 0.8909 34 1 6.1660 1.1052 -2.5419 35 1 4.8242 5.2118 0.3214 36 1 5.5954 3.7427 3.3957 37 1 5.9035 4.9396 5.5235 38 1 5.2960 7.3161 5.7049 39 1 4.3728 8.5087 3.7609 40 1 3.1081 9.9508 0.9296 41 1 2.8257 9.2853 2.5560 42 1 4.4711 9.7446 2.0559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249698658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:33 Heat of formation + Delta-G solvation = 33.456136 kcal Electronic energy + Delta-G solvation = -23046.073635 eV Core-core repulsion = 19857.083889 eV Total energy + Delta-G solvation = -3188.989747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.42274 -38.05786 -35.40887 -34.05173 -32.43152 -30.94350 -29.48264 -28.75347 -28.09052 -26.12842 -23.69905 -22.72220 -21.72947 -21.11520 -20.47215 -18.14269 -17.91427 -16.76841 -16.34676 -15.25526 -15.20234 -15.00063 -14.64951 -14.44871 -14.01066 -13.77949 -13.75883 -13.60531 -13.38535 -12.91294 -12.50191 -12.38228 -12.33018 -12.07371 -11.82460 -11.62714 -11.47179 -11.12800 -10.82845 -10.78298 -10.67309 -10.54159 -10.49070 -10.10481 -10.04024 -9.84393 -9.50473 -9.38706 -8.80661 -7.80845 -7.15386 -6.93090 -6.73440 -6.04088 -4.69475 1.55752 1.69728 1.80458 2.59272 2.67359 2.92159 2.94569 2.99495 3.22135 3.70600 3.79782 4.21677 4.46388 4.72945 5.03931 5.04745 5.17204 5.42231 5.49198 5.51476 5.58171 5.63325 5.68222 5.92567 6.01276 6.03726 6.22863 6.28054 6.30623 6.32032 6.47623 6.59967 6.62378 6.74344 6.78353 6.83681 6.95217 6.97474 7.15567 7.18919 7.40078 7.60521 7.89102 8.08220 8.62519 8.94886 10.01450 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.004936 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.255843 B = 5670.941377 C = 6891.722317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.128 4.128 4 C 0.112 3.888 5 N -0.343 5.343 6 C -0.374 4.374 7 H 0.100 0.900 8 C 0.064 3.936 9 N -0.824 5.824 10 Si 0.927 3.073 11 H -0.264 1.264 12 H -0.276 1.276 13 H -0.264 1.264 14 C 0.496 3.504 15 S -0.755 6.755 16 N -0.638 5.638 17 C 0.188 3.812 18 C -0.060 4.060 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.112 4.112 23 S -0.124 6.124 24 C -0.142 4.142 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.284 0.716 35 H 0.408 0.592 36 H 0.159 0.841 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 8.218 1.947 8.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.167 4.167 4 C -0.012 4.012 5 N -0.025 5.025 6 C -0.506 4.506 7 H 0.117 0.883 8 C -0.150 4.150 9 N -0.454 5.454 10 Si 0.751 3.249 11 H -0.189 1.189 12 H -0.201 1.201 13 H -0.189 1.189 14 C 0.133 3.867 15 S -0.622 6.622 16 N -0.267 5.267 17 C 0.086 3.914 18 C -0.085 4.085 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.159 4.159 22 C -0.228 4.228 23 S 0.116 5.884 24 C -0.310 4.310 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.249 0.751 36 H 0.176 0.824 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.328 7.015 1.409 7.524 hybrid contribution 0.491 1.372 -0.765 1.646 sum -1.838 8.387 0.644 8.610 Atomic orbital electron populations 1.21738 0.96444 1.00740 1.01556 1.21356 0.95161 0.97107 1.01669 1.21868 0.96065 0.96541 1.02260 1.21915 0.92662 0.81511 1.05087 1.42829 1.45278 1.11883 1.02548 1.19673 1.39687 0.99033 0.92179 0.88259 1.25546 0.92561 0.95637 1.01287 1.69964 1.24606 1.15307 1.35500 0.85970 0.79395 0.79394 0.80121 1.18902 1.20097 1.18895 1.21584 0.88727 0.85649 0.90719 1.92560 1.78379 1.72749 1.18516 1.41779 1.65779 1.11583 1.07584 1.16931 0.98484 0.88869 0.87165 1.21717 0.94279 1.01135 0.91399 1.20962 1.01564 0.93981 0.97718 1.20875 1.00618 0.94952 0.97606 1.20700 1.03978 0.99157 0.92057 1.21397 1.07207 0.96625 0.97550 1.85499 1.79885 1.06813 1.16180 1.23608 1.05173 0.96723 1.05536 0.92807 0.93214 0.93345 0.92566 0.91849 0.90882 0.92779 0.87987 0.89340 0.90563 0.75136 0.82403 0.86081 0.86536 0.86465 0.87862 0.89963 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.11 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.55 5.44 -26.73 -0.15 -2.69 16 4 C 0.11 2.50 4.64 -4.04 -0.02 2.48 16 5 N -0.34 -8.09 2.52 -116.74 -0.29 -8.39 16 6 C -0.37 -8.70 8.49 -14.98 -0.13 -8.82 16 7 H 0.10 2.23 6.99 -52.49 -0.37 1.86 16 8 C 0.06 1.44 4.93 -17.46 -0.09 1.35 16 9 N -0.82 -19.55 11.58 55.49 0.64 -18.90 16 10 Si 0.93 17.43 29.60 -169.99 -5.03 12.40 16 11 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 12 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 13 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 14 C 0.50 11.80 7.42 -86.92 -0.65 11.15 16 15 S -0.75 -18.92 23.47 -107.50 -2.52 -21.44 16 16 N -0.64 -13.72 4.82 -11.25 -0.05 -13.78 16 17 C 0.19 3.74 6.02 -83.44 -0.50 3.24 16 18 C -0.06 -1.17 7.84 -39.42 -0.31 -1.48 16 19 C -0.12 -1.94 10.04 -39.56 -0.40 -2.34 16 20 C -0.12 -1.72 10.04 -39.57 -0.40 -2.12 16 21 C -0.13 -1.99 9.36 -39.40 -0.37 -2.36 16 22 C -0.11 -1.94 6.12 -38.91 -0.24 -2.17 16 23 S -0.12 -1.91 21.54 -107.50 -2.32 -4.22 16 24 C -0.14 -1.47 9.15 101.05 0.92 -0.54 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.59 7.42 -51.93 -0.39 1.21 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 2.36 5.69 -51.93 -0.30 2.07 16 33 H 0.09 2.12 6.84 -51.93 -0.36 1.77 16 34 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 35 H 0.41 8.52 6.24 -40.82 -0.25 8.26 16 36 H 0.16 3.47 5.87 -39.45 -0.23 3.24 16 37 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.41 5.88 -52.49 -0.31 1.10 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.80 7.75 -51.92 -0.40 0.40 16 42 H 0.08 0.75 7.75 -51.93 -0.40 0.35 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -27.31 362.04 -12.16 -39.47 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -5.94 Total: 17.50 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.10 Total: -8.10 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.29 Total: -41.07 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: -20.82 SS G_CDS: -4.84 Total: -25.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.31 -12.16 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249698658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.926 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds