Wall clock time and date at job start Tue Mar 31 2020 14:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46790 * 2 1 4 4 C 1.53002 * 109.47168 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47410 * 179.97438 * 4 3 2 6 6 C 1.37048 * 120.00283 * 264.44579 * 5 4 3 7 7 H 1.07996 * 120.00049 * 140.38183 * 6 5 4 8 8 C 1.38881 * 119.99655 * 320.38315 * 6 5 4 9 9 N 1.31479 * 120.00287 * 340.51293 * 8 6 5 10 10 Si 1.86801 * 120.00033 * 160.51270 * 8 6 5 11 11 H 1.48501 * 109.46989 * 59.99740 * 10 8 6 12 12 H 1.48498 * 109.47229 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47333 * 300.00201 * 10 8 6 14 14 C 1.34777 * 119.99999 * 84.44477 * 5 4 3 15 15 S 1.71200 * 119.99943 * 0.02562 * 14 5 4 16 16 N 1.34775 * 119.99980 * 180.02562 * 14 5 4 17 17 C 1.40093 * 120.00131 * 182.80797 * 16 14 5 18 18 C 1.38662 * 120.09893 * 39.55492 * 17 16 14 19 19 C 1.38247 * 120.00732 * 179.97438 * 18 17 16 20 20 C 1.38299 * 120.20922 * 359.97438 * 19 18 17 21 21 C 1.38210 * 120.20281 * 0.02562 * 20 19 18 22 22 C 1.38769 * 119.98686 * 359.97438 * 21 20 19 23 23 S 1.76197 * 120.09994 * 180.02562 * 22 21 20 24 24 C 1.81404 * 103.00307 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47039 * 299.99753 * 1 2 3 26 26 H 1.09001 * 109.47077 * 60.00216 * 1 2 3 27 27 H 1.09006 * 109.46789 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47039 * 240.00246 * 2 1 3 29 29 H 1.09001 * 109.47077 * 119.99784 * 2 1 3 30 30 H 1.09004 * 109.47099 * 59.99975 * 3 2 1 31 31 H 1.08997 * 109.47601 * 299.99712 * 3 2 1 32 32 H 1.09004 * 109.46813 * 60.00188 * 4 3 2 33 33 H 1.09001 * 109.47205 * 300.00095 * 4 3 2 34 34 H 0.96999 * 120.00389 * 179.97438 * 9 8 6 35 35 H 0.97007 * 120.00049 * 2.80977 * 16 14 5 36 36 H 1.08002 * 119.99807 * 0.25096 * 18 17 16 37 37 H 1.08003 * 119.89813 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.89795 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.00054 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47141 * 180.02562 * 24 23 22 41 41 H 1.09003 * 109.46702 * 300.00361 * 24 23 22 42 42 H 1.08994 * 109.46766 * 60.00043 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3955 3.4309 -1.1815 7 1 4.1437 4.4680 -1.3468 8 6 5.0610 2.7124 -2.1661 9 7 5.7014 1.6073 -1.8542 10 14 5.0464 3.3160 -3.9339 11 1 5.6581 4.6675 -4.0005 12 1 5.8230 2.3780 -4.7837 13 1 3.6458 3.3821 -4.4228 14 6 4.1759 3.4975 1.1614 15 16 3.7552 2.7389 2.6374 16 7 4.6246 4.7683 1.1608 17 6 4.8028 5.4489 2.3723 18 6 5.3230 4.7850 3.4728 19 6 5.4985 5.4586 4.6673 20 6 5.1572 6.7949 4.7693 21 6 4.6379 7.4651 3.6778 22 6 4.4582 6.7971 2.4748 23 16 3.7971 7.6488 1.0812 24 6 3.5233 9.3246 1.7193 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9287 -0.8892 33 1 3.9330 0.9289 0.8909 34 1 6.1660 1.1052 -2.5419 35 1 4.8242 5.2118 0.3214 36 1 5.5954 3.7427 3.3957 37 1 5.9035 4.9396 5.5235 38 1 5.2960 7.3161 5.7049 39 1 4.3728 8.5087 3.7609 40 1 3.1081 9.9508 0.9296 41 1 2.8257 9.2853 2.5560 42 1 4.4711 9.7446 2.0559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249698658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:33 Heat of formation + Delta-G solvation = 22.352396 kcal Electronic energy + Delta-G solvation = -23046.555130 eV Core-core repulsion = 19857.083889 eV Total energy + Delta-G solvation = -3189.471241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96701 -39.63853 -36.93777 -35.58106 -34.14245 -32.19380 -30.90899 -29.68511 -29.59660 -27.86781 -25.23985 -24.12911 -23.18867 -22.68574 -21.99550 -19.83013 -19.42524 -18.30017 -17.88978 -16.89013 -16.71989 -16.43839 -16.11349 -15.82993 -15.50629 -15.27855 -14.92433 -14.72245 -14.65999 -14.24245 -13.98328 -13.78856 -13.63833 -13.32963 -13.30845 -13.09868 -12.84171 -12.65303 -12.30890 -12.21924 -12.09939 -12.07187 -11.96397 -11.83538 -11.48153 -11.21234 -11.12662 -10.66704 -10.38357 -9.35700 -8.83916 -8.63765 -8.27332 -7.93212 -6.53460 0.15648 0.46892 0.57502 1.01287 1.29692 1.43118 1.45678 1.50955 1.56462 2.04645 2.19244 2.68889 2.91059 3.01944 3.98510 4.06402 4.10183 4.24237 4.26431 4.30189 4.30958 4.45437 4.48315 4.57671 4.69432 4.77935 4.81741 4.85388 4.91797 4.97164 5.00434 5.03816 5.13982 5.30256 5.34066 5.35844 5.43799 5.48870 5.54125 5.70002 5.80735 6.07127 6.21847 6.38140 6.84897 7.15695 8.28242 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010594 B = 0.004936 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.255843 B = 5670.941377 C = 6891.722317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.114 4.114 4 C 0.119 3.881 5 N -0.351 5.351 6 C -0.392 4.392 7 H 0.103 0.897 8 C 0.031 3.969 9 N -0.855 5.855 10 Si 0.995 3.005 11 H -0.259 1.259 12 H -0.271 1.271 13 H -0.260 1.260 14 C 0.489 3.511 15 S -0.796 6.796 16 N -0.630 5.630 17 C 0.146 3.854 18 C -0.084 4.084 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.130 4.130 22 C -0.113 4.113 23 S -0.173 6.173 24 C -0.126 4.126 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.289 0.711 35 H 0.408 0.592 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 10.873 1.792 11.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.153 4.153 4 C -0.004 4.004 5 N -0.034 5.034 6 C -0.523 4.523 7 H 0.121 0.879 8 C -0.180 4.180 9 N -0.485 5.485 10 Si 0.815 3.185 11 H -0.183 1.183 12 H -0.196 1.196 13 H -0.184 1.184 14 C 0.125 3.875 15 S -0.665 6.665 16 N -0.260 5.260 17 C 0.046 3.954 18 C -0.109 4.109 19 C -0.145 4.145 20 C -0.125 4.125 21 C -0.154 4.154 22 C -0.229 4.229 23 S 0.067 5.933 24 C -0.294 4.294 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.178 0.822 39 H 0.173 0.827 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.922 9.709 1.288 10.221 hybrid contribution 0.736 0.691 -0.630 1.190 sum -2.187 10.400 0.659 10.648 Atomic orbital electron populations 1.21694 0.94229 1.02371 1.01608 1.21340 0.97047 0.94607 1.01856 1.21743 0.94100 0.98632 1.00844 1.21829 0.94226 0.81044 1.03326 1.43013 1.45514 1.12190 1.02668 1.19970 1.40438 0.99582 0.92285 0.87946 1.26408 0.91461 0.95450 1.04710 1.70035 1.25170 1.16404 1.36930 0.84970 0.79494 0.79020 0.75018 1.18301 1.19560 1.18427 1.21517 0.89217 0.86628 0.90099 1.92450 1.79831 1.73798 1.20385 1.41732 1.65052 1.10743 1.08439 1.17251 1.01100 0.90373 0.86710 1.21514 0.96139 1.00079 0.93165 1.21242 1.01241 0.95187 0.96871 1.21359 0.98068 0.93929 0.99130 1.21219 1.02485 1.00769 0.90919 1.21597 1.06530 0.95683 0.99080 1.85678 1.79708 1.10992 1.16941 1.23745 1.06593 0.92558 1.06509 0.93396 0.92530 0.90916 0.91611 0.92411 0.93204 0.92956 0.88743 0.91697 0.90041 0.75158 0.85937 0.84108 0.82150 0.82745 0.85712 0.88758 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.19 16 2 C -0.11 -3.68 5.93 30.59 0.18 -3.50 16 3 C -0.11 -4.71 5.44 30.59 0.17 -4.55 16 4 C 0.12 5.62 4.64 86.38 0.40 6.02 16 5 N -0.35 -17.40 2.52 -523.26 -1.32 -18.72 16 6 C -0.39 -18.76 8.49 84.03 0.71 -18.04 16 7 H 0.10 4.73 6.99 -2.91 -0.02 4.71 16 8 C 0.03 1.41 4.93 84.90 0.42 1.83 16 9 N -0.86 -41.49 11.58 21.66 0.25 -41.24 16 10 Si 0.99 35.41 29.60 68.60 2.03 37.44 16 11 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 12 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 13 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 14 C 0.49 24.67 7.42 179.05 1.33 26.00 16 15 S -0.80 -42.37 23.47 -56.49 -1.33 -43.70 16 16 N -0.63 -28.54 4.82 -189.50 -0.91 -29.45 16 17 C 0.15 6.02 6.02 38.23 0.23 6.25 16 18 C -0.08 -3.43 7.84 22.37 0.18 -3.26 16 19 C -0.12 -3.89 10.04 22.29 0.22 -3.67 16 20 C -0.10 -2.66 10.04 22.28 0.22 -2.43 16 21 C -0.13 -3.44 9.36 22.39 0.21 -3.23 16 22 C -0.11 -3.83 6.12 22.71 0.14 -3.69 16 23 S -0.17 -5.14 21.54 -56.49 -1.22 -6.36 16 24 C -0.13 -2.13 9.15 113.37 1.04 -1.09 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 2.28 7.42 -2.39 -0.02 2.26 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 4.58 5.69 -2.39 -0.01 4.56 16 33 H 0.06 3.34 6.84 -2.39 -0.02 3.32 16 34 H 0.29 12.95 8.31 -92.71 -0.77 12.18 16 35 H 0.41 17.90 6.24 -92.70 -0.58 17.32 16 36 H 0.12 5.82 5.87 -11.20 -0.07 5.76 16 37 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.16 2.91 5.88 -2.91 -0.02 2.89 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.42 7.75 -2.39 -0.02 1.40 16 42 H 0.10 1.37 7.75 -2.39 -0.02 1.35 16 Total: -1.00 -63.54 362.04 4.07 -59.47 By element: Atomic # 1 Polarization: 48.71 SS G_CDS: 0.40 Total: 49.11 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 6.16 Total: -6.55 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -1.98 Total: -89.41 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Atomic # 16 Polarization: -47.51 SS G_CDS: -2.54 Total: -50.05 kcal Total: -63.54 4.07 -59.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249698658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.819 kcal (2) G-P(sol) polarization free energy of solvation -63.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds