Wall clock time and date at job start Tue Mar 31 2020 13:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38369 * 119.85673 * 2 1 4 4 C 1.37911 * 120.18625 * 179.70212 * 3 2 1 5 5 C 1.39730 * 119.88827 * 0.52982 * 4 3 2 6 6 C 1.47610 * 120.14238 * 179.74687 * 5 4 3 7 7 N 1.31686 * 126.26058 * 179.70016 * 6 5 4 8 8 N 1.28671 * 109.38543 * 179.74640 * 7 6 5 9 9 C 1.31783 * 109.33372 * 0.44517 * 8 7 6 10 10 C 1.47052 * 126.29496 * 179.82177 * 9 8 7 11 11 C 1.40343 * 119.91070 * 359.69369 * 10 9 8 12 12 C 1.36057 * 120.08547 * 179.97438 * 11 10 9 13 13 C 1.41052 * 119.91255 * 0.02562 * 12 11 10 14 14 C 1.40815 * 120.08452 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00073 * 330.06372 * 14 13 12 16 16 C 1.40012 * 120.00217 * 150.06777 * 14 13 12 17 17 N 1.30794 * 120.00174 * 161.73533 * 16 14 13 18 18 Si 1.86796 * 119.99808 * 341.73366 * 16 14 13 19 19 H 1.48505 * 109.47030 * 95.41729 * 18 16 14 20 20 H 1.48498 * 109.47425 * 215.41533 * 18 16 14 21 21 H 1.48500 * 109.47224 * 335.42183 * 18 16 14 22 22 C 1.41055 * 119.83191 * 359.97438 * 13 12 11 23 23 C 1.36057 * 119.90791 * 0.02597 * 22 13 12 24 24 O 1.34821 * 126.26172 * 359.72078 * 6 5 4 25 25 C 1.39656 * 119.71614 * 359.46523 * 5 4 3 26 26 C 1.38174 * 119.81041 * 0.28266 * 25 5 4 27 27 F 1.35102 * 119.94511 * 179.97438 * 26 25 5 28 28 H 1.09005 * 109.46768 * 270.02705 * 1 2 3 29 29 H 1.08998 * 109.46650 * 30.02024 * 1 2 3 30 30 H 1.08993 * 109.47281 * 150.02680 * 1 2 3 31 31 H 1.07999 * 119.90664 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.05725 * 180.27531 * 4 3 2 33 33 H 1.07991 * 119.95938 * 0.02562 * 11 10 9 34 34 H 1.07995 * 120.04874 * 179.71831 * 12 11 10 35 35 H 0.96998 * 119.99868 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.04229 * 179.97438 * 22 13 12 37 37 H 1.08001 * 119.95300 * 179.97438 * 23 22 13 38 38 H 1.07995 * 120.09574 * 180.29407 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5749 1.2080 0.0062 5 6 4.2782 0.0006 0.0013 6 6 5.7543 0.0026 0.0022 7 7 6.5346 -1.0582 0.0036 8 7 7.7654 -0.6831 -0.0013 9 6 7.8202 0.6336 0.0037 10 6 9.0405 1.4540 0.0044 11 6 10.3000 0.8349 0.0058 12 6 11.4315 1.5906 0.0059 13 6 11.3374 2.9979 0.0051 14 6 12.5060 3.7835 0.0057 15 1 13.4059 3.4124 0.4734 16 6 12.5014 5.0458 -0.6000 17 7 13.4330 5.9156 -0.3063 18 14 11.1647 5.4877 -1.8278 19 1 10.0756 6.2191 -1.1319 20 1 11.7367 6.3488 -2.8938 21 1 10.6190 4.2465 -2.4335 22 6 10.0697 3.6164 0.0036 23 6 8.9428 2.8540 0.0035 24 8 6.5503 1.0907 0.0023 25 6 3.5786 -1.2081 0.0014 26 6 2.1968 -1.2020 0.0005 27 9 1.5173 -2.3697 0.0002 28 1 -0.3633 0.0005 1.0277 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6520 2.1331 -0.0004 32 1 4.1104 2.1458 0.0107 33 1 10.3713 -0.2426 0.0061 34 1 12.4003 1.1135 0.0117 35 1 13.4300 6.7900 -0.7262 36 1 9.9937 4.6938 0.0033 37 1 7.9718 3.3268 0.0028 38 1 4.1159 -2.1449 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258784531.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:25 Heat of formation + Delta-G solvation = 24.506451 kcal Electronic energy + Delta-G solvation = -24813.215812 eV Core-core repulsion = 20922.180850 eV Total energy + Delta-G solvation = -3891.034962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.15747 -43.45643 -39.36002 -38.13225 -35.65195 -34.34847 -33.81099 -31.81532 -30.93624 -30.23983 -29.79945 -27.46415 -25.71526 -23.75983 -23.19293 -22.58819 -21.60511 -21.15243 -20.63400 -18.23602 -17.84516 -16.85876 -16.82969 -16.72685 -15.99754 -15.93428 -15.77545 -15.13246 -14.89481 -14.16802 -14.03763 -13.81664 -13.74781 -13.52908 -13.07267 -12.80940 -12.74629 -12.57601 -12.50396 -12.18118 -11.96892 -11.95350 -11.60200 -11.44274 -11.29011 -11.11931 -10.79156 -10.54706 -10.31874 -10.06773 -9.87120 -9.48389 -9.16961 -8.69375 -8.17679 -7.62180 -7.45226 -4.91246 0.30187 0.87805 1.39104 2.29233 2.52141 2.53077 2.79784 2.93074 3.02848 3.13367 3.38513 3.64984 3.92738 4.07065 4.15850 4.36500 4.44080 4.70168 4.88065 4.94163 5.06021 5.19252 5.21433 5.34509 5.48193 5.55150 5.70588 5.72879 5.76121 5.84852 5.86379 5.98222 6.09185 6.15350 6.25885 6.43936 6.50443 6.56507 6.71746 7.06435 7.22990 7.39299 7.47034 7.69004 7.86763 8.20755 8.30414 8.74335 9.52726 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.002463 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.843088 B =11364.398974 C =12282.956665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.110 4.110 3 C -0.091 4.091 4 C -0.099 4.099 5 C 0.028 3.972 6 C 0.139 3.861 7 N -0.255 5.255 8 N -0.330 5.330 9 C 0.279 3.721 10 C -0.202 4.202 11 C -0.015 4.015 12 C -0.214 4.214 13 C 0.102 3.898 14 C -0.400 4.400 15 H 0.102 0.898 16 C 0.078 3.922 17 N -0.771 5.771 18 Si 0.918 3.082 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.239 1.239 22 C -0.244 4.244 23 C -0.024 4.024 24 O -0.225 6.225 25 C -0.111 4.111 26 C 0.099 3.901 27 F -0.134 7.134 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.295 0.705 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.847 -3.637 -0.776 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.112 4.112 3 C -0.109 4.109 4 C -0.119 4.119 5 C 0.026 3.974 6 C -0.068 4.068 7 N -0.104 5.104 8 N -0.178 5.178 9 C 0.080 3.920 10 C -0.207 4.207 11 C -0.035 4.035 12 C -0.233 4.233 13 C 0.098 3.902 14 C -0.425 4.425 15 H 0.120 0.880 16 C -0.147 4.147 17 N -0.392 5.392 18 Si 0.743 3.257 19 H -0.190 1.190 20 H -0.211 1.211 21 H -0.161 1.161 22 C -0.263 4.263 23 C -0.044 4.044 24 O -0.108 6.108 25 C -0.131 4.131 26 C 0.079 3.921 27 F -0.112 7.112 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.259 -4.705 -0.775 18.871 hybrid contribution -0.790 1.421 -0.420 1.679 sum -19.048 -3.284 -1.195 19.366 Atomic orbital electron populations 1.20764 0.89834 1.03554 1.03028 1.20116 0.97306 0.91848 1.01925 1.20816 0.93323 0.97341 0.99398 1.21354 0.94303 0.97508 0.98766 1.16870 0.84216 0.93745 1.02596 1.24731 0.93477 0.80608 1.08000 1.74591 0.96754 1.25137 1.13918 1.74908 1.10433 1.08441 1.24067 1.25915 0.82665 0.90150 0.93240 1.16619 0.85640 0.90763 1.27657 1.20384 0.90466 0.98726 0.93882 1.20685 0.96897 0.93216 1.12496 1.17919 0.92442 0.92460 0.87377 1.19831 0.98371 0.97597 1.26751 0.88045 1.26472 0.96764 0.94713 0.96756 1.69657 1.30673 1.05657 1.33172 0.86178 0.79672 0.80497 0.79401 1.18953 1.21120 1.16131 1.20667 0.92542 0.98426 1.14676 1.20403 0.97659 0.91859 0.94480 1.84841 1.17641 1.36589 1.71728 1.21063 0.92065 0.99061 1.00913 1.17195 0.89251 0.81219 1.04403 1.91500 1.79767 1.45994 1.93961 0.90520 0.90710 0.90998 0.84206 0.84318 0.86891 0.86946 0.89371 0.87379 0.87946 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.83 36.01 0.35 -0.39 16 2 C -0.11 -1.01 5.89 -104.44 -0.62 -1.63 16 3 C -0.09 -0.79 9.68 -39.65 -0.38 -1.18 16 4 C -0.10 -1.10 9.73 -39.14 -0.38 -1.48 16 5 C 0.03 0.38 5.87 -104.99 -0.62 -0.24 16 6 C 0.14 2.42 7.98 -13.79 -0.11 2.31 16 7 N -0.25 -4.97 11.92 32.09 0.38 -4.58 16 8 N -0.33 -6.94 11.90 32.00 0.38 -6.56 16 9 C 0.28 5.74 7.96 -14.00 -0.11 5.63 16 10 C -0.20 -4.26 5.89 -104.75 -0.62 -4.87 16 11 C -0.02 -0.31 9.62 -39.57 -0.38 -0.69 16 12 C -0.21 -4.53 9.73 -39.30 -0.38 -4.91 16 13 C 0.10 2.32 5.10 -106.79 -0.55 1.78 16 14 C -0.40 -9.43 9.54 -37.94 -0.36 -9.79 16 15 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16 16 C 0.08 1.77 5.40 -17.33 -0.09 1.68 16 17 N -0.77 -17.87 13.93 55.55 0.77 -17.10 16 18 Si 0.92 18.32 24.51 -169.99 -4.17 14.15 16 19 H -0.26 -5.08 6.70 56.52 0.38 -4.70 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.24 -4.96 6.87 56.52 0.39 -4.57 16 22 C -0.24 -5.30 7.09 -39.30 -0.28 -5.58 16 23 C -0.02 -0.50 9.65 -39.58 -0.38 -0.88 16 24 O -0.23 -4.24 10.42 2.41 0.03 -4.21 16 25 C -0.11 -1.38 9.68 -39.08 -0.38 -1.76 16 26 C 0.10 1.09 7.23 -39.48 -0.29 0.80 16 27 F -0.13 -1.49 16.46 2.25 0.04 -1.46 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 30 H 0.07 0.47 7.63 -51.93 -0.40 0.07 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.14 1.43 7.93 -52.49 -0.42 1.02 16 33 H 0.11 2.18 7.84 -52.49 -0.41 1.77 16 34 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 35 H 0.30 6.11 8.30 -40.82 -0.34 5.77 16 36 H 0.11 2.28 4.73 -52.49 -0.25 2.03 16 37 H 0.10 1.88 7.91 -52.49 -0.42 1.46 16 38 H 0.15 1.89 7.86 -52.49 -0.41 1.48 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -25.82 338.26 -6.62 -32.44 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.58 Total: 3.43 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -5.57 Total: -21.20 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 1.54 Total: -28.24 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: 0.03 Total: -4.21 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -4.17 Total: 14.15 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -25.82 -6.62 -32.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258784531.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.944 kcal (2) G-P(sol) polarization free energy of solvation -25.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds