Wall clock time and date at job start Tue Mar 31 2020 13:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38369 * 119.85673 * 2 1 4 4 C 1.37911 * 120.18625 * 179.70212 * 3 2 1 5 5 C 1.39730 * 119.88827 * 0.52982 * 4 3 2 6 6 C 1.47610 * 120.14238 * 179.74687 * 5 4 3 7 7 N 1.31686 * 126.26058 * 179.70016 * 6 5 4 8 8 N 1.28671 * 109.38543 * 179.74640 * 7 6 5 9 9 C 1.31783 * 109.33372 * 0.44517 * 8 7 6 10 10 C 1.47052 * 126.29496 * 179.82177 * 9 8 7 11 11 C 1.40343 * 119.91070 * 359.69369 * 10 9 8 12 12 C 1.36057 * 120.08547 * 179.97438 * 11 10 9 13 13 C 1.41052 * 119.91255 * 0.02562 * 12 11 10 14 14 C 1.40815 * 120.08452 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00073 * 330.06372 * 14 13 12 16 16 C 1.40012 * 120.00217 * 150.06777 * 14 13 12 17 17 N 1.30794 * 120.00174 * 161.73533 * 16 14 13 18 18 Si 1.86796 * 119.99808 * 341.73366 * 16 14 13 19 19 H 1.48505 * 109.47030 * 95.41729 * 18 16 14 20 20 H 1.48498 * 109.47425 * 215.41533 * 18 16 14 21 21 H 1.48500 * 109.47224 * 335.42183 * 18 16 14 22 22 C 1.41055 * 119.83191 * 359.97438 * 13 12 11 23 23 C 1.36057 * 119.90791 * 0.02597 * 22 13 12 24 24 O 1.34821 * 126.26172 * 359.72078 * 6 5 4 25 25 C 1.39656 * 119.71614 * 359.46523 * 5 4 3 26 26 C 1.38174 * 119.81041 * 0.28266 * 25 5 4 27 27 F 1.35102 * 119.94511 * 179.97438 * 26 25 5 28 28 H 1.09005 * 109.46768 * 270.02705 * 1 2 3 29 29 H 1.08998 * 109.46650 * 30.02024 * 1 2 3 30 30 H 1.08993 * 109.47281 * 150.02680 * 1 2 3 31 31 H 1.07999 * 119.90664 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.05725 * 180.27531 * 4 3 2 33 33 H 1.07991 * 119.95938 * 0.02562 * 11 10 9 34 34 H 1.07995 * 120.04874 * 179.71831 * 12 11 10 35 35 H 0.96998 * 119.99868 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.04229 * 179.97438 * 22 13 12 37 37 H 1.08001 * 119.95300 * 179.97438 * 23 22 13 38 38 H 1.07995 * 120.09574 * 180.29407 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5749 1.2080 0.0062 5 6 4.2782 0.0006 0.0013 6 6 5.7543 0.0026 0.0022 7 7 6.5346 -1.0582 0.0036 8 7 7.7654 -0.6831 -0.0013 9 6 7.8202 0.6336 0.0037 10 6 9.0405 1.4540 0.0044 11 6 10.3000 0.8349 0.0058 12 6 11.4315 1.5906 0.0059 13 6 11.3374 2.9979 0.0051 14 6 12.5060 3.7835 0.0057 15 1 13.4059 3.4124 0.4734 16 6 12.5014 5.0458 -0.6000 17 7 13.4330 5.9156 -0.3063 18 14 11.1647 5.4877 -1.8278 19 1 10.0756 6.2191 -1.1319 20 1 11.7367 6.3488 -2.8938 21 1 10.6190 4.2465 -2.4335 22 6 10.0697 3.6164 0.0036 23 6 8.9428 2.8540 0.0035 24 8 6.5503 1.0907 0.0023 25 6 3.5786 -1.2081 0.0014 26 6 2.1968 -1.2020 0.0005 27 9 1.5173 -2.3697 0.0002 28 1 -0.3633 0.0005 1.0277 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6520 2.1331 -0.0004 32 1 4.1104 2.1458 0.0107 33 1 10.3713 -0.2426 0.0061 34 1 12.4003 1.1135 0.0117 35 1 13.4300 6.7900 -0.7262 36 1 9.9937 4.6938 0.0033 37 1 7.9718 3.3268 0.0028 38 1 4.1159 -2.1449 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258784531.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:25 Heat of formation + Delta-G solvation = 9.372047 kcal Electronic energy + Delta-G solvation = -24813.872089 eV Core-core repulsion = 20922.180850 eV Total energy + Delta-G solvation = -3891.691239 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.01895 -44.97088 -40.24053 -39.79254 -37.17439 -35.97129 -34.83266 -33.32175 -31.91483 -31.77623 -31.17485 -28.57049 -27.18110 -24.98337 -24.55653 -23.79115 -22.91308 -22.47177 -22.18427 -19.56268 -19.37278 -18.33898 -18.28814 -17.69657 -17.33443 -16.82862 -16.78952 -16.61498 -16.01086 -15.77901 -15.50701 -14.79529 -14.68435 -14.43497 -14.36625 -14.31820 -14.17341 -13.90484 -13.53545 -13.40210 -13.30698 -13.01082 -12.92346 -12.71606 -12.66860 -12.50440 -12.29443 -12.07210 -11.90220 -11.64089 -11.32953 -11.04260 -10.08584 -9.85822 -9.81164 -9.16914 -9.12817 -6.66875 -0.82396 -0.03699 0.04207 0.84004 0.89379 1.10068 1.24335 1.34842 1.46918 1.55574 2.05379 2.43721 2.47462 2.72328 3.10265 3.34295 3.35608 3.59914 3.70685 3.89379 3.96090 4.11124 4.18331 4.24340 4.35674 4.43448 4.58974 4.59673 4.61716 4.78259 4.78654 4.90147 4.92646 4.94875 5.06815 5.16021 5.20645 5.24028 5.40474 5.55177 5.69751 5.71021 5.75480 6.00214 6.14725 6.49520 6.58618 7.22593 7.91428 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.002463 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.843088 B =11364.398974 C =12282.956665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 C -0.080 4.080 4 C -0.090 4.090 5 C -0.010 4.010 6 C 0.171 3.829 7 N -0.291 5.291 8 N -0.342 5.342 9 C 0.263 3.737 10 C -0.199 4.199 11 C -0.017 4.017 12 C -0.221 4.221 13 C 0.094 3.906 14 C -0.437 4.437 15 H 0.076 0.924 16 C 0.051 3.949 17 N -0.807 5.807 18 Si 0.962 3.038 19 H -0.248 1.248 20 H -0.272 1.272 21 H -0.252 1.252 22 C -0.253 4.253 23 C -0.023 4.023 24 O -0.222 6.222 25 C -0.113 4.113 26 C 0.085 3.915 27 F -0.137 7.137 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.181 0.819 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.305 0.695 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.351 -2.909 -1.210 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.098 4.098 4 C -0.110 4.110 5 C -0.012 4.012 6 C -0.037 4.037 7 N -0.138 5.138 8 N -0.190 5.190 9 C 0.062 3.938 10 C -0.203 4.203 11 C -0.037 4.037 12 C -0.240 4.240 13 C 0.090 3.910 14 C -0.464 4.464 15 H 0.094 0.906 16 C -0.170 4.170 17 N -0.430 5.430 18 Si 0.784 3.216 19 H -0.173 1.173 20 H -0.198 1.198 21 H -0.176 1.176 22 C -0.272 4.272 23 C -0.043 4.043 24 O -0.104 6.104 25 C -0.133 4.133 26 C 0.066 3.934 27 F -0.115 7.115 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.198 0.802 32 H 0.166 0.834 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.766 -4.000 -1.200 23.146 hybrid contribution 0.162 0.938 -0.236 0.980 sum -22.604 -3.062 -1.436 22.855 Atomic orbital electron populations 1.20909 0.87428 1.04802 1.04255 1.20565 0.99008 0.91065 0.98629 1.21237 0.92287 0.98742 0.97513 1.21584 0.95453 0.96692 0.97298 1.16991 0.82111 0.95383 1.06731 1.25559 0.94817 0.79662 1.03664 1.74579 0.96447 1.25886 1.16879 1.74835 1.11614 1.08841 1.23716 1.25770 0.83130 0.90080 0.94862 1.16824 0.85973 0.91255 1.26280 1.20527 0.90331 0.99306 0.93511 1.20852 0.97691 0.93009 1.12480 1.18081 0.92700 0.92991 0.87238 1.19748 0.98102 0.99010 1.29490 0.90587 1.27012 0.98252 0.94256 0.97456 1.69661 1.32189 1.06456 1.34672 0.85521 0.78176 0.79878 0.78038 1.17297 1.19792 1.17602 1.20783 0.92419 0.98972 1.15022 1.20635 0.98489 0.91603 0.93587 1.84834 1.17163 1.36921 1.71529 1.21024 0.92925 0.98440 1.00950 1.17313 0.88751 0.82006 1.05311 1.91496 1.79601 1.46345 1.94071 0.89103 0.88202 0.91127 0.80171 0.83350 0.85840 0.86053 0.88396 0.86736 0.85361 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.83 71.24 0.70 -0.25 16 2 C -0.09 -1.29 5.89 -19.75 -0.12 -1.41 16 3 C -0.08 -1.00 9.68 22.22 0.22 -0.79 16 4 C -0.09 -1.68 9.73 22.55 0.22 -1.46 16 5 C -0.01 -0.26 5.87 -20.10 -0.12 -0.38 16 6 C 0.17 5.77 7.98 87.19 0.70 6.47 16 7 N -0.29 -11.28 11.92 -166.01 -1.98 -13.26 16 8 N -0.34 -14.35 11.90 -166.17 -1.98 -16.33 16 9 C 0.26 10.62 7.96 87.01 0.69 11.31 16 10 C -0.20 -8.23 5.89 -19.94 -0.12 -8.34 16 11 C -0.02 -0.72 9.62 22.27 0.21 -0.50 16 12 C -0.22 -9.53 9.73 22.45 0.22 -9.31 16 13 C 0.09 4.34 5.10 -21.27 -0.11 4.23 16 14 C -0.44 -21.54 9.54 23.33 0.22 -21.32 16 15 H 0.08 3.98 8.06 -2.91 -0.02 3.96 16 16 C 0.05 2.40 5.40 85.28 0.46 2.86 16 17 N -0.81 -38.51 13.93 21.84 0.30 -38.21 16 18 Si 0.96 37.30 24.51 68.60 1.68 38.98 16 19 H -0.25 -8.92 6.70 99.48 0.67 -8.25 16 20 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 21 H -0.25 -10.27 6.87 99.48 0.68 -9.59 16 22 C -0.25 -10.85 7.09 22.45 0.16 -10.69 16 23 C -0.02 -0.93 9.65 22.27 0.21 -0.72 16 24 O -0.22 -8.01 10.42 -14.28 -0.15 -8.15 16 25 C -0.11 -2.68 9.68 22.60 0.22 -2.46 16 26 C 0.09 1.68 7.23 22.34 0.16 1.84 16 27 F -0.14 -2.80 16.46 44.97 0.74 -2.06 16 28 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.10 0.38 8.08 -2.39 -0.02 0.36 16 30 H 0.07 0.64 7.63 -2.39 -0.02 0.63 16 31 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.15 2.48 7.93 -2.91 -0.02 2.46 16 33 H 0.12 4.77 7.84 -2.92 -0.02 4.74 16 34 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 35 H 0.30 12.84 8.30 -92.71 -0.77 12.07 16 36 H 0.12 4.71 4.73 -2.91 -0.01 4.70 16 37 H 0.13 4.37 7.91 -2.91 -0.02 4.34 16 38 H 0.14 3.53 7.86 -2.91 -0.02 3.51 16 Total: -1.00 -57.54 338.26 3.61 -53.93 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.05 Total: 16.02 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 3.93 Total: -30.92 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -3.65 Total: -67.80 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.15 Total: -8.15 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.74 Total: -2.06 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 1.68 Total: 38.98 kcal Total: -57.54 3.61 -53.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258784531.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.303 kcal (2) G-P(sol) polarization free energy of solvation -57.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds