Wall clock time and date at job start Tue Mar 31 2020 13:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38377 * 119.85813 * 2 1 4 4 C 1.37905 * 120.18931 * 179.72610 * 3 2 1 5 5 C 1.39734 * 119.88958 * 0.25059 * 4 3 2 6 6 C 1.47595 * 120.14508 * 180.02562 * 5 4 3 7 7 N 1.31679 * 126.25734 * 359.69144 * 6 5 4 8 8 N 1.28665 * 109.39849 * 179.85895 * 7 6 5 9 9 C 1.31832 * 109.32853 * 0.41103 * 8 7 6 10 10 C 1.46893 * 126.30063 * 179.73385 * 9 8 7 11 11 C 1.39770 * 120.65653 * 180.02562 * 10 9 8 12 12 C 1.37724 * 119.90966 * 179.97438 * 11 10 9 13 13 C 1.38917 * 121.32592 * 0.02833 * 12 11 10 14 14 C 1.36246 * 121.37488 * 359.97438 * 13 12 11 15 15 C 1.40925 * 119.96497 * 359.69544 * 14 13 12 16 16 C 1.40616 * 120.63475 * 180.29591 * 15 14 13 17 17 H 1.08004 * 120.00477 * 210.97219 * 16 15 14 18 18 C 1.40097 * 119.99829 * 30.97651 * 16 15 14 19 19 N 1.30756 * 119.99838 * 10.32944 * 18 16 15 20 20 Si 1.86802 * 119.99670 * 190.32693 * 18 16 15 21 21 H 1.48503 * 109.46921 * 60.00521 * 20 18 16 22 22 H 1.48502 * 109.46604 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47518 * 299.99780 * 20 18 16 24 24 O 1.34841 * 126.25778 * 179.97438 * 6 5 4 25 25 C 1.39660 * 119.71308 * 359.97438 * 5 4 3 26 26 C 1.38173 * 119.81389 * 0.02562 * 25 5 4 27 27 F 1.35105 * 119.94585 * 180.02562 * 26 25 5 28 28 H 1.08991 * 109.47114 * 89.99694 * 1 2 3 29 29 H 1.09001 * 109.47257 * 210.00835 * 1 2 3 30 30 H 1.09000 * 109.46411 * 330.00049 * 1 2 3 31 31 H 1.08000 * 119.90572 * 359.97438 * 3 2 1 32 32 H 1.07995 * 120.05270 * 180.27397 * 4 3 2 33 33 H 1.07998 * 120.04014 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.34006 * 179.97438 * 12 11 10 35 35 H 1.07995 * 119.31069 * 179.97438 * 13 12 11 36 36 H 1.08000 * 120.01557 * 179.97438 * 14 13 12 37 37 H 0.96998 * 119.99677 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.09470 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5749 1.2081 0.0057 5 6 4.2782 0.0006 0.0062 6 6 5.7542 0.0026 0.0128 7 7 6.5316 1.0654 0.0130 8 7 7.7634 0.6939 0.0227 9 6 7.8220 -0.6231 0.0203 10 6 9.0433 -1.4392 0.0234 11 6 8.9678 -2.8349 0.0197 12 6 10.1227 -3.5851 0.0222 13 6 11.3748 -2.9834 0.0289 14 6 11.5103 -1.6277 0.0328 15 6 10.3655 -0.8059 0.0235 16 6 10.4890 0.5948 0.0211 17 1 9.7345 1.2043 0.4962 18 6 11.5908 1.1998 -0.5976 19 7 12.3948 0.4872 -1.3429 20 14 11.9112 3.0244 -0.3577 21 1 12.1114 3.3061 1.0865 22 1 13.1285 3.4165 -1.1125 23 1 10.7482 3.8011 -0.8571 24 8 6.5531 -1.0837 0.0145 25 6 3.5786 -1.2080 0.0014 26 6 2.1969 -1.2020 -0.0042 27 9 1.5173 -2.3697 -0.0083 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3632 0.8900 0.5138 31 1 1.6520 2.1332 -0.0004 32 1 4.1103 2.1460 0.0102 33 1 8.0050 -3.3242 0.0149 34 1 10.0537 -4.6629 0.0197 35 1 12.2592 -3.6032 0.0311 36 1 12.4945 -1.1832 0.0384 37 1 13.1574 0.9061 -1.7716 38 1 4.1159 -2.1449 0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258784958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:29 Heat of formation + Delta-G solvation = 30.844829 kcal Electronic energy + Delta-G solvation = -25389.486038 eV Core-core repulsion = 21498.725929 eV Total energy + Delta-G solvation = -3890.760109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.03108 -43.04756 -39.18003 -37.52733 -35.28107 -34.03406 -33.70584 -31.44736 -30.76332 -29.90419 -29.05147 -26.84661 -25.70101 -23.53262 -23.22295 -22.41584 -21.38427 -20.66577 -20.32427 -18.01558 -17.51203 -16.59212 -16.45655 -16.25771 -15.85169 -15.80021 -15.54224 -14.96112 -14.57078 -14.29138 -13.86151 -13.63177 -13.40841 -13.24621 -12.86455 -12.72050 -12.55473 -12.34518 -11.96942 -11.80192 -11.62917 -11.52311 -11.41318 -11.30697 -11.17842 -11.01952 -10.62696 -10.04404 -9.89037 -9.82151 -9.71013 -9.49896 -9.02220 -8.53738 -7.73313 -7.31442 -7.09545 -4.68398 0.52231 1.03794 1.69998 2.57716 2.72698 2.90107 2.95690 3.01283 3.12331 3.43942 3.65988 3.75730 3.96202 4.36059 4.39076 4.54298 4.68174 4.90452 5.05404 5.31447 5.32176 5.34307 5.39957 5.42833 5.61960 5.75909 5.87717 5.91393 6.05326 6.11830 6.12593 6.25729 6.36007 6.38743 6.57173 6.67550 6.74444 6.82042 6.99238 7.24457 7.55145 7.71038 7.79842 7.92785 8.34852 8.45160 8.57102 9.18589 9.76422 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.003217 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.046806 B = 8700.915371 C =10289.223999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C -0.091 4.091 4 C -0.088 4.088 5 C 0.037 3.963 6 C 0.121 3.879 7 N -0.255 5.255 8 N -0.306 5.306 9 C 0.278 3.722 10 C -0.198 4.198 11 C -0.039 4.039 12 C -0.245 4.245 13 C -0.085 4.085 14 C -0.149 4.149 15 C 0.144 3.856 16 C -0.391 4.391 17 H 0.117 0.883 18 C 0.068 3.932 19 N -0.767 5.767 20 Si 0.923 3.077 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.255 1.255 24 O -0.234 6.234 25 C -0.130 4.130 26 C 0.098 3.902 27 F -0.136 7.136 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.291 0.709 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 0.409 1.535 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.107 4.107 5 C 0.035 3.965 6 C -0.086 4.086 7 N -0.105 5.105 8 N -0.155 5.155 9 C 0.082 3.918 10 C -0.203 4.203 11 C -0.059 4.059 12 C -0.264 4.264 13 C -0.105 4.105 14 C -0.168 4.168 15 C 0.139 3.861 16 C -0.418 4.418 17 H 0.134 0.866 18 C -0.154 4.154 19 N -0.389 5.389 20 Si 0.746 3.254 21 H -0.182 1.182 22 H -0.201 1.201 23 H -0.179 1.179 24 O -0.118 6.118 25 C -0.151 4.151 26 C 0.079 3.921 27 F -0.115 7.115 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.102 0.898 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.319 1.643 1.371 13.489 hybrid contribution -0.161 -0.932 -0.134 0.955 sum -13.479 0.711 1.237 13.555 Atomic orbital electron populations 1.20737 0.90003 1.03394 1.02874 1.20068 0.97153 0.91872 1.02681 1.20819 0.93333 0.97210 0.99516 1.21251 0.93747 0.97600 0.98111 1.16933 0.84522 0.93554 1.01456 1.24640 0.93162 0.81094 1.09656 1.74632 0.97474 1.25328 1.13083 1.75197 1.08540 1.08448 1.23282 1.25651 0.82153 0.90094 0.93913 1.18112 0.85869 0.90345 1.25969 1.20591 0.97125 0.92036 0.96178 1.20156 0.92406 0.97598 1.16260 1.20508 0.95978 0.95179 0.98811 1.21064 0.98648 0.92205 1.04840 1.18428 0.88018 0.93217 0.86468 1.20394 1.04404 0.92411 1.24623 0.86553 1.26276 0.93983 1.02318 0.92863 1.69760 1.11151 1.39093 1.18906 0.86070 0.78859 0.80364 0.80106 1.18221 1.20065 1.17919 1.84827 1.17779 1.36774 1.72414 1.21193 0.92395 0.99146 1.02360 1.17223 0.89282 0.81163 1.04441 1.91487 1.79872 1.46131 1.94008 0.90690 0.91155 0.90801 0.84232 0.83655 0.88475 0.88680 0.88776 0.85720 0.89819 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.82 36.00 0.35 -0.51 16 2 C -0.12 -1.22 5.89 -104.44 -0.62 -1.84 16 3 C -0.09 -0.92 9.68 -39.65 -0.38 -1.30 16 4 C -0.09 -1.12 9.70 -39.14 -0.38 -1.50 16 5 C 0.04 0.58 5.87 -104.99 -0.62 -0.03 16 6 C 0.12 2.41 7.98 -13.80 -0.11 2.30 16 7 N -0.26 -5.63 11.92 32.09 0.38 -5.25 16 8 N -0.31 -7.53 9.31 31.97 0.30 -7.23 16 9 C 0.28 6.69 7.91 -14.05 -0.11 6.58 16 10 C -0.20 -4.83 6.08 -102.45 -0.62 -5.46 16 11 C -0.04 -0.87 9.74 -39.20 -0.38 -1.25 16 12 C -0.24 -5.11 9.98 -39.52 -0.39 -5.50 16 13 C -0.09 -1.83 9.91 -40.05 -0.40 -2.23 16 14 C -0.15 -3.53 8.60 -39.28 -0.34 -3.87 16 15 C 0.14 3.64 5.68 -104.61 -0.59 3.05 16 16 C -0.39 -9.90 8.10 -37.99 -0.31 -10.21 16 17 H 0.12 3.01 5.77 -52.48 -0.30 2.71 16 18 C 0.07 1.59 5.25 -17.31 -0.09 1.50 16 19 N -0.77 -18.07 10.99 55.56 0.61 -17.46 16 20 Si 0.92 17.99 29.57 -169.99 -5.03 12.97 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 O -0.23 -5.08 10.48 2.30 0.02 -5.05 16 25 C -0.13 -1.84 9.71 -39.07 -0.38 -2.22 16 26 C 0.10 1.23 7.23 -39.48 -0.29 0.94 16 27 F -0.14 -1.71 16.46 2.25 0.04 -1.68 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.54 7.63 -51.93 -0.40 0.14 16 30 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.15 1.82 7.86 -52.49 -0.41 1.40 16 33 H 0.10 1.93 7.96 -52.49 -0.42 1.51 16 34 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.13 2.97 6.40 -52.49 -0.34 2.63 16 37 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 38 H 0.14 1.99 7.93 -52.49 -0.42 1.57 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -27.32 339.40 -7.74 -35.06 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.53 Total: 5.07 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -5.65 Total: -21.54 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 1.29 Total: -29.94 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: 0.02 Total: -5.05 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.32 -7.74 -35.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258784958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.906 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds