Wall clock time and date at job start Tue Mar 31 2020 13:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38377 * 119.85813 * 2 1 4 4 C 1.37905 * 120.18931 * 179.72610 * 3 2 1 5 5 C 1.39734 * 119.88958 * 0.25059 * 4 3 2 6 6 C 1.47595 * 120.14508 * 180.02562 * 5 4 3 7 7 N 1.31679 * 126.25734 * 359.69144 * 6 5 4 8 8 N 1.28665 * 109.39849 * 179.85895 * 7 6 5 9 9 C 1.31832 * 109.32853 * 0.41103 * 8 7 6 10 10 C 1.46893 * 126.30063 * 179.73385 * 9 8 7 11 11 C 1.39770 * 120.65653 * 180.02562 * 10 9 8 12 12 C 1.37724 * 119.90966 * 179.97438 * 11 10 9 13 13 C 1.38917 * 121.32592 * 0.02833 * 12 11 10 14 14 C 1.36246 * 121.37488 * 359.97438 * 13 12 11 15 15 C 1.40925 * 119.96497 * 359.69544 * 14 13 12 16 16 C 1.40616 * 120.63475 * 180.29591 * 15 14 13 17 17 H 1.08004 * 120.00477 * 210.97219 * 16 15 14 18 18 C 1.40097 * 119.99829 * 30.97651 * 16 15 14 19 19 N 1.30756 * 119.99838 * 10.32944 * 18 16 15 20 20 Si 1.86802 * 119.99670 * 190.32693 * 18 16 15 21 21 H 1.48503 * 109.46921 * 60.00521 * 20 18 16 22 22 H 1.48502 * 109.46604 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47518 * 299.99780 * 20 18 16 24 24 O 1.34841 * 126.25778 * 179.97438 * 6 5 4 25 25 C 1.39660 * 119.71308 * 359.97438 * 5 4 3 26 26 C 1.38173 * 119.81389 * 0.02562 * 25 5 4 27 27 F 1.35105 * 119.94585 * 180.02562 * 26 25 5 28 28 H 1.08991 * 109.47114 * 89.99694 * 1 2 3 29 29 H 1.09001 * 109.47257 * 210.00835 * 1 2 3 30 30 H 1.09000 * 109.46411 * 330.00049 * 1 2 3 31 31 H 1.08000 * 119.90572 * 359.97438 * 3 2 1 32 32 H 1.07995 * 120.05270 * 180.27397 * 4 3 2 33 33 H 1.07998 * 120.04014 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.34006 * 179.97438 * 12 11 10 35 35 H 1.07995 * 119.31069 * 179.97438 * 13 12 11 36 36 H 1.08000 * 120.01557 * 179.97438 * 14 13 12 37 37 H 0.96998 * 119.99677 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.09470 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5749 1.2081 0.0057 5 6 4.2782 0.0006 0.0062 6 6 5.7542 0.0026 0.0128 7 7 6.5316 1.0654 0.0130 8 7 7.7634 0.6939 0.0227 9 6 7.8220 -0.6231 0.0203 10 6 9.0433 -1.4392 0.0234 11 6 8.9678 -2.8349 0.0197 12 6 10.1227 -3.5851 0.0222 13 6 11.3748 -2.9834 0.0289 14 6 11.5103 -1.6277 0.0328 15 6 10.3655 -0.8059 0.0235 16 6 10.4890 0.5948 0.0211 17 1 9.7345 1.2043 0.4962 18 6 11.5908 1.1998 -0.5976 19 7 12.3948 0.4872 -1.3429 20 14 11.9112 3.0244 -0.3577 21 1 12.1114 3.3061 1.0865 22 1 13.1285 3.4165 -1.1125 23 1 10.7482 3.8011 -0.8571 24 8 6.5531 -1.0837 0.0145 25 6 3.5786 -1.2080 0.0014 26 6 2.1969 -1.2020 -0.0042 27 9 1.5173 -2.3697 -0.0083 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5140 30 1 -0.3632 0.8900 0.5138 31 1 1.6520 2.1332 -0.0004 32 1 4.1103 2.1460 0.0102 33 1 8.0050 -3.3242 0.0149 34 1 10.0537 -4.6629 0.0197 35 1 12.2592 -3.6032 0.0311 36 1 12.4945 -1.1832 0.0384 37 1 13.1574 0.9061 -1.7716 38 1 4.1159 -2.1449 0.0022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258784958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:28 Heat of formation + Delta-G solvation = 15.567377 kcal Electronic energy + Delta-G solvation = -25390.148518 eV Core-core repulsion = 21498.725929 eV Total energy + Delta-G solvation = -3891.422589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.101 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.02017 -44.76328 -40.20160 -39.26598 -37.01268 -35.77637 -34.81103 -33.00737 -31.78801 -31.65988 -30.48676 -28.07757 -27.40991 -25.02809 -24.58770 -23.67340 -22.83056 -22.16272 -22.02241 -19.50763 -19.04120 -18.17299 -17.83407 -17.70671 -17.28099 -16.83543 -16.79018 -16.40761 -15.98181 -15.87633 -15.07088 -14.74697 -14.51245 -14.42834 -14.34241 -14.25275 -13.79884 -13.41586 -13.38697 -13.31464 -13.20748 -12.95687 -12.83844 -12.76650 -12.60013 -12.32165 -12.18181 -11.75242 -11.59362 -11.48671 -11.26535 -11.21656 -10.07291 -9.79916 -9.48956 -9.01280 -8.81121 -6.51390 -0.73419 0.04149 0.12873 0.91250 1.13709 1.29221 1.35491 1.46746 1.52326 1.75585 2.15633 2.47226 2.61871 2.74391 3.22924 3.51741 3.53284 3.67407 3.80993 3.93027 4.01938 4.20297 4.28530 4.43330 4.46513 4.57072 4.64886 4.71102 4.80065 4.84896 4.94182 4.99489 5.01927 5.06296 5.18105 5.23751 5.24253 5.26741 5.48760 5.72327 5.81651 5.92784 6.04592 6.17381 6.53432 6.64756 6.78775 7.46149 8.07225 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.003217 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.046806 B = 8700.915371 C =10289.223999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.077 4.077 4 C -0.081 4.081 5 C -0.003 4.003 6 C 0.150 3.850 7 N -0.288 5.288 8 N -0.331 5.331 9 C 0.258 3.742 10 C -0.220 4.220 11 C -0.048 4.048 12 C -0.238 4.238 13 C -0.080 4.080 14 C -0.171 4.171 15 C 0.119 3.881 16 C -0.427 4.427 17 H 0.100 0.900 18 C 0.037 3.963 19 N -0.791 5.791 20 Si 0.983 3.017 21 H -0.254 1.254 22 H -0.255 1.255 23 H -0.269 1.269 24 O -0.237 6.237 25 C -0.132 4.132 26 C 0.087 3.913 27 F -0.137 7.137 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.184 0.816 32 H 0.146 0.854 33 H 0.115 0.885 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.300 0.700 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.582 0.423 1.507 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.005 4.005 6 C -0.058 4.058 7 N -0.136 5.136 8 N -0.179 5.179 9 C 0.059 3.941 10 C -0.225 4.225 11 C -0.067 4.067 12 C -0.257 4.257 13 C -0.099 4.099 14 C -0.191 4.191 15 C 0.114 3.886 16 C -0.455 4.455 17 H 0.118 0.882 18 C -0.183 4.183 19 N -0.415 5.415 20 Si 0.802 3.198 21 H -0.178 1.178 22 H -0.178 1.178 23 H -0.193 1.193 24 O -0.120 6.120 25 C -0.153 4.153 26 C 0.068 3.932 27 F -0.115 7.115 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.201 0.799 32 H 0.164 0.836 33 H 0.133 0.867 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.988 1.658 1.344 16.129 hybrid contribution 0.274 -1.059 -0.121 1.101 sum -15.714 0.599 1.223 15.773 Atomic orbital electron populations 1.20894 0.87234 1.04817 1.04233 1.20549 0.99054 0.90926 0.99027 1.21246 0.91939 0.98850 0.97441 1.21440 0.95107 0.96496 0.97015 1.17070 0.82076 0.95418 1.05935 1.25609 0.94715 0.80076 1.05354 1.74563 0.96968 1.25973 1.16049 1.75125 1.09923 1.09052 1.23755 1.25691 0.82823 0.90153 0.95407 1.18439 0.85890 0.91609 1.26568 1.20876 0.98643 0.91234 0.95997 1.20580 0.91596 0.99365 1.14188 1.20882 0.97633 0.94576 0.96810 1.21076 0.97892 0.93319 1.06767 1.18777 0.89011 0.93836 0.86956 1.20400 1.05522 0.92721 1.26828 0.88237 1.26917 0.93333 1.05875 0.92157 1.69760 1.11721 1.40605 1.19388 0.85222 0.78754 0.75487 0.80291 1.17784 1.17839 1.19335 1.84819 1.17359 1.37431 1.72429 1.21158 0.93401 0.98380 1.02313 1.17325 0.88678 0.82056 1.05174 1.91489 1.79623 1.46348 1.94077 0.89135 0.91123 0.88115 0.79920 0.83583 0.86672 0.85065 0.85525 0.86495 0.88886 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.82 71.24 0.70 -0.49 16 2 C -0.09 -1.62 5.89 -19.75 -0.12 -1.73 16 3 C -0.08 -1.25 9.68 22.22 0.22 -1.03 16 4 C -0.08 -1.94 9.70 22.55 0.22 -1.72 16 5 C 0.00 -0.09 5.87 -20.10 -0.12 -0.21 16 6 C 0.15 6.17 7.98 87.19 0.70 6.86 16 7 N -0.29 -13.30 11.92 -166.00 -1.98 -15.28 16 8 N -0.33 -17.25 9.31 -166.21 -1.55 -18.80 16 9 C 0.26 13.06 7.91 86.96 0.69 13.75 16 10 C -0.22 -11.21 6.08 -18.46 -0.11 -11.32 16 11 C -0.05 -2.11 9.74 22.52 0.22 -1.89 16 12 C -0.24 -9.60 9.98 22.31 0.22 -9.38 16 13 C -0.08 -3.37 9.91 21.97 0.22 -3.15 16 14 C -0.17 -8.38 8.60 22.46 0.19 -8.19 16 15 C 0.12 6.33 5.68 -19.85 -0.11 6.22 16 16 C -0.43 -22.94 8.10 23.30 0.19 -22.75 16 17 H 0.10 5.54 5.77 -2.91 -0.02 5.53 16 18 C 0.04 1.80 5.25 85.30 0.45 2.25 16 19 N -0.79 -38.54 10.99 21.85 0.24 -38.30 16 20 Si 0.98 38.12 29.57 68.60 2.03 40.15 16 21 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 22 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 O -0.24 -10.68 10.48 -14.69 -0.15 -10.83 16 25 C -0.13 -3.66 9.71 22.60 0.22 -3.44 16 26 C 0.09 1.99 7.23 22.34 0.16 2.16 16 27 F -0.14 -3.17 16.46 44.97 0.74 -2.43 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.79 7.63 -2.39 -0.02 0.77 16 30 H 0.10 0.57 8.08 -2.39 -0.02 0.56 16 31 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.15 3.48 7.86 -2.91 -0.02 3.46 16 33 H 0.12 4.54 7.96 -2.91 -0.02 4.52 16 34 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.12 5.78 6.40 -2.91 -0.02 5.76 16 37 H 0.30 12.98 8.29 -92.71 -0.77 12.21 16 38 H 0.13 3.83 7.93 -2.91 -0.02 3.81 16 Total: -1.00 -63.67 339.40 4.38 -59.29 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 1.12 Total: 20.26 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 3.93 Total: -34.07 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -3.28 Total: -72.38 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.15 Total: -10.83 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.74 Total: -2.43 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -63.67 4.38 -59.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258784958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.859 kcal (2) G-P(sol) polarization free energy of solvation -63.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds