Wall clock time and date at job start Tue Mar 31 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48495 * 109.47385 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47153 * 300.00228 * 3 2 1 6 6 H 1.48506 * 109.47212 * 59.99798 * 3 2 1 7 7 C 1.37872 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00512 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99828 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99959 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00266 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99809 * 179.97438 * 11 10 9 14 14 O 1.45197 * 109.47175 * 179.97438 * 13 11 10 15 15 C 1.34780 * 117.00468 * 180.02562 * 14 13 11 16 16 O 1.21537 * 119.99538 * 0.02562 * 15 14 13 17 17 C 1.47273 * 120.00511 * 180.02562 * 15 14 13 18 18 N 1.36113 * 126.45576 * 0.16992 * 17 15 14 19 19 C 1.29919 * 108.47114 * 180.24637 * 18 17 15 20 20 O 1.34057 * 109.26069 * 359.75692 * 19 18 17 21 21 C 1.34232 * 108.24598 * 0.02562 * 20 19 18 22 22 C 1.50693 * 126.53164 * 179.97438 * 21 20 19 23 23 H 1.09001 * 110.42364 * 162.71738 * 22 21 20 24 24 C 1.54481 * 110.37036 * 285.01817 * 22 21 20 25 25 C 1.54517 * 104.06349 * 142.81184 * 24 22 21 26 26 C 1.54479 * 104.06037 * 0.02562 * 25 24 22 27 27 O 1.44422 * 110.37445 * 40.40162 * 22 21 20 28 28 H 0.97001 * 119.99613 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47021 * 59.99907 * 9 7 2 30 30 H 1.08995 * 109.47236 * 299.99914 * 9 7 2 31 31 H 0.96997 * 120.00351 * 359.97438 * 10 9 7 32 32 H 1.09004 * 109.47130 * 60.00157 * 13 11 10 33 33 H 1.09000 * 109.47641 * 300.00109 * 13 11 10 34 34 H 1.07998 * 125.37031 * 179.73188 * 19 18 17 35 35 H 1.08996 * 110.51163 * 24.17035 * 24 22 21 36 36 H 1.08994 * 110.51524 * 261.45714 * 24 22 21 37 37 H 1.08991 * 110.51174 * 118.64513 * 25 24 22 38 38 H 1.08995 * 110.51247 * 241.35992 * 25 24 22 39 39 H 1.08997 * 110.37024 * 94.85221 * 26 25 24 40 40 H 1.08995 * 110.37315 * 217.18852 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 1.7538 -4.8833 0.0019 12 8 0.5614 -5.1050 0.0019 13 6 2.7331 -6.0287 0.0010 14 8 2.0071 -7.2862 0.0023 15 6 2.7411 -8.4166 0.0023 16 8 3.9548 -8.3529 0.0017 17 6 2.0726 -9.7288 0.0029 18 7 0.7300 -9.9525 0.0003 19 6 0.5264 -11.2356 0.0073 20 8 1.7070 -11.8706 0.0091 21 6 2.6810 -10.9470 0.0036 22 6 4.1651 -11.2084 0.0038 23 1 4.7087 -10.3154 -0.3047 24 6 4.6307 -11.6641 1.4045 25 6 5.7127 -12.7279 1.1129 26 6 5.7733 -12.7886 -0.4295 27 8 4.4808 -12.3155 -0.8683 28 1 -0.4849 0.8401 -0.0004 29 1 0.6240 -2.5574 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 3.1567 -3.4354 0.0003 32 1 3.3605 -5.9710 0.8905 33 1 3.3590 -5.9711 -0.8895 34 1 -0.4413 -11.7151 0.0114 35 1 3.8014 -12.1045 1.9580 36 1 5.0574 -10.8266 1.9564 37 1 6.6743 -12.4164 1.5206 38 1 5.4183 -13.6943 1.5222 39 1 6.5634 -12.1380 -0.8040 40 1 5.9348 -13.8137 -0.7628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321868645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:13 Heat of formation + Delta-G solvation = -136.510041 kcal Electronic energy + Delta-G solvation = -26413.444737 eV Core-core repulsion = 22195.745867 eV Total energy + Delta-G solvation = -4217.698870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.89669 -40.50315 -39.81423 -38.69305 -36.49525 -35.24884 -34.23422 -32.82214 -32.40287 -32.10454 -29.54110 -28.55091 -26.78023 -24.85568 -24.08491 -22.64919 -22.21170 -21.76362 -20.95751 -19.92834 -18.71867 -17.59386 -17.45104 -17.27505 -16.80450 -16.65970 -16.47174 -15.90361 -15.85614 -15.37556 -15.05474 -14.62222 -14.38555 -14.31354 -14.21410 -13.65373 -13.08272 -13.06497 -12.53422 -12.43715 -12.28871 -11.99677 -11.91199 -11.82384 -11.70402 -11.35036 -11.08087 -10.99469 -10.94724 -10.94193 -10.75436 -10.38014 -10.34142 -9.45462 -9.41456 -9.16500 -8.77937 -7.97398 -6.18873 -4.26235 0.47465 1.59058 1.95307 2.32670 2.71425 3.19481 3.22842 3.25015 3.29872 3.32900 3.62331 3.91901 3.96571 4.07780 4.33105 4.37952 4.45975 4.60011 4.70439 4.73195 4.96831 5.03240 5.09815 5.17022 5.17997 5.21009 5.31555 5.33062 5.34051 5.44123 5.48654 5.64593 6.13394 6.19346 7.02793 7.24202 7.32107 7.47353 7.50899 7.62987 7.92831 8.51032 8.72489 8.98049 9.40118 10.91294 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.025731 B = 0.002110 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.921020 B =13265.720485 C =14124.176779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.529 6.529 13 C 0.047 3.953 14 O -0.303 6.303 15 C 0.555 3.445 16 O -0.504 6.504 17 C -0.041 4.041 18 N -0.437 5.437 19 C 0.183 3.817 20 O -0.182 6.182 21 C 0.058 3.942 22 C 0.147 3.853 23 H 0.133 0.867 24 C -0.147 4.147 25 C -0.153 4.153 26 C 0.043 3.957 27 O -0.364 6.364 28 H 0.266 0.734 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.451 -28.233 1.878 30.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.405 6.405 13 C -0.031 4.031 14 O -0.216 6.216 15 C 0.399 3.601 16 O -0.394 6.394 17 C -0.160 4.160 18 N -0.165 5.165 19 C -0.046 4.046 20 O -0.068 6.068 21 C 0.001 3.999 22 C 0.089 3.911 23 H 0.150 0.850 24 C -0.185 4.185 25 C -0.191 4.191 26 C -0.033 4.033 27 O -0.284 6.284 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.278 0.722 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.136 -27.803 1.699 29.642 hybrid contribution 1.306 0.636 0.152 1.460 sum 11.442 -27.168 1.851 29.537 Atomic orbital electron populations 1.69989 1.06110 1.27283 1.48764 1.24962 0.94943 0.99512 0.94657 0.86333 0.79794 0.82844 0.77764 1.19616 1.20782 1.20779 1.21241 0.93355 0.90276 1.53365 0.91708 1.19185 0.88173 0.81507 0.98074 1.46348 1.11491 1.05259 1.72624 1.19827 0.89112 0.83927 0.78975 1.90736 1.16233 1.84433 1.49137 1.22992 0.94552 0.80697 1.04820 1.86735 1.38958 1.13396 1.82496 1.19373 0.84514 0.83578 0.72589 1.90821 1.13853 1.87486 1.47253 1.20210 0.89923 0.91633 1.14191 1.71008 1.14279 1.16021 1.15179 1.28321 0.89728 0.86657 0.99886 1.84448 1.15763 1.38082 1.68526 1.23274 0.90961 0.86059 0.99652 1.21946 0.83992 0.93654 0.91531 0.85021 1.23013 0.99578 0.99946 0.95950 1.22959 0.99639 0.99835 0.96627 1.23512 0.85528 1.00809 0.93476 1.89223 1.36309 1.47867 1.54955 0.92430 0.95230 0.95226 0.77443 0.88192 0.88166 0.72229 0.90166 0.88914 0.89713 0.90160 0.91365 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 10 N -0.71 -14.72 5.55 -61.47 -0.34 -15.06 16 11 C 0.50 10.24 7.91 -10.98 -0.09 10.15 16 12 O -0.53 -13.39 16.50 -14.10 -0.23 -13.63 16 13 C 0.05 0.73 5.95 36.01 0.21 0.94 16 14 O -0.30 -5.26 9.77 -47.39 -0.46 -5.72 16 15 C 0.56 8.35 7.96 34.40 0.27 8.62 16 16 O -0.50 -7.21 14.40 -19.29 -0.28 -7.49 16 17 C -0.04 -0.56 7.04 -83.04 -0.58 -1.15 16 18 N -0.44 -5.93 11.36 -11.50 -0.13 -6.06 16 19 C 0.18 1.63 13.19 51.95 0.69 2.31 16 20 O -0.18 -1.83 10.72 6.50 0.07 -1.76 16 21 C 0.06 0.66 6.28 -35.06 -0.22 0.44 16 22 C 0.15 1.42 3.48 -27.11 -0.09 1.33 16 23 H 0.13 1.36 5.96 -51.93 -0.31 1.05 16 24 C -0.15 -1.05 6.62 -25.16 -0.17 -1.21 16 25 C -0.15 -0.78 7.09 -25.16 -0.18 -0.96 16 26 C 0.04 0.26 7.63 37.93 0.29 0.55 16 27 O -0.36 -3.63 11.33 -35.29 -0.40 -4.03 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 32 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.26 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -36.57 356.47 -5.82 -42.39 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.82 Total: 1.19 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -0.31 Total: 14.32 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.26 Total: -46.35 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.30 Total: -32.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.57 -5.82 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321868645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.119 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds