Wall clock time and date at job start Tue Mar 31 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48495 * 109.47385 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47153 * 300.00228 * 3 2 1 6 6 H 1.48506 * 109.47212 * 59.99798 * 3 2 1 7 7 C 1.37872 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00512 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99828 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99959 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00266 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99809 * 179.97438 * 11 10 9 14 14 O 1.45197 * 109.47175 * 179.97438 * 13 11 10 15 15 C 1.34780 * 117.00468 * 180.02562 * 14 13 11 16 16 O 1.21537 * 119.99538 * 0.02562 * 15 14 13 17 17 C 1.47273 * 120.00511 * 180.02562 * 15 14 13 18 18 N 1.36113 * 126.45576 * 0.16992 * 17 15 14 19 19 C 1.29919 * 108.47114 * 180.24637 * 18 17 15 20 20 O 1.34057 * 109.26069 * 359.75692 * 19 18 17 21 21 C 1.34232 * 108.24598 * 0.02562 * 20 19 18 22 22 C 1.50693 * 126.53164 * 179.97438 * 21 20 19 23 23 H 1.09001 * 110.42364 * 162.71738 * 22 21 20 24 24 C 1.54481 * 110.37036 * 285.01817 * 22 21 20 25 25 C 1.54517 * 104.06349 * 142.81184 * 24 22 21 26 26 C 1.54479 * 104.06037 * 0.02562 * 25 24 22 27 27 O 1.44422 * 110.37445 * 40.40162 * 22 21 20 28 28 H 0.97001 * 119.99613 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47021 * 59.99907 * 9 7 2 30 30 H 1.08995 * 109.47236 * 299.99914 * 9 7 2 31 31 H 0.96997 * 120.00351 * 359.97438 * 10 9 7 32 32 H 1.09004 * 109.47130 * 60.00157 * 13 11 10 33 33 H 1.09000 * 109.47641 * 300.00109 * 13 11 10 34 34 H 1.07998 * 125.37031 * 179.73188 * 19 18 17 35 35 H 1.08996 * 110.51163 * 24.17035 * 24 22 21 36 36 H 1.08994 * 110.51524 * 261.45714 * 24 22 21 37 37 H 1.08991 * 110.51174 * 118.64513 * 25 24 22 38 38 H 1.08995 * 110.51247 * 241.35992 * 25 24 22 39 39 H 1.08997 * 110.37024 * 94.85221 * 26 25 24 40 40 H 1.08995 * 110.37315 * 217.18852 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2030 -3.6126 0.0015 11 6 1.7538 -4.8833 0.0019 12 8 0.5614 -5.1050 0.0019 13 6 2.7331 -6.0287 0.0010 14 8 2.0071 -7.2862 0.0023 15 6 2.7411 -8.4166 0.0023 16 8 3.9548 -8.3529 0.0017 17 6 2.0726 -9.7288 0.0029 18 7 0.7300 -9.9525 0.0003 19 6 0.5264 -11.2356 0.0073 20 8 1.7070 -11.8706 0.0091 21 6 2.6810 -10.9470 0.0036 22 6 4.1651 -11.2084 0.0038 23 1 4.7087 -10.3154 -0.3047 24 6 4.6307 -11.6641 1.4045 25 6 5.7127 -12.7279 1.1129 26 6 5.7733 -12.7886 -0.4295 27 8 4.4808 -12.3155 -0.8683 28 1 -0.4849 0.8401 -0.0004 29 1 0.6240 -2.5574 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 3.1567 -3.4354 0.0003 32 1 3.3605 -5.9710 0.8905 33 1 3.3590 -5.9711 -0.8895 34 1 -0.4413 -11.7151 0.0114 35 1 3.8014 -12.1045 1.9580 36 1 5.0574 -10.8266 1.9564 37 1 6.6743 -12.4164 1.5206 38 1 5.4183 -13.6943 1.5222 39 1 6.5634 -12.1380 -0.8040 40 1 5.9348 -13.8137 -0.7628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321868645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:13 Heat of formation + Delta-G solvation = -166.149824 kcal Electronic energy + Delta-G solvation = -26414.730014 eV Core-core repulsion = 22195.745867 eV Total energy + Delta-G solvation = -4218.984147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.72486 -41.71622 -40.47853 -40.32243 -37.73406 -36.20535 -36.11986 -34.42824 -33.47978 -32.75242 -31.00109 -29.48104 -28.49547 -25.91326 -24.76777 -24.53535 -22.95802 -22.48508 -21.83869 -21.67522 -19.78221 -19.12294 -18.51072 -18.24869 -17.88800 -17.64723 -17.40568 -17.25733 -16.98361 -16.50743 -16.48585 -16.19746 -15.88948 -15.12036 -14.82719 -14.74609 -14.57967 -14.27433 -14.11465 -13.83278 -13.72959 -13.00577 -12.91601 -12.83418 -12.76053 -12.66678 -12.45274 -12.22335 -12.18923 -12.01034 -11.86761 -11.63674 -11.47227 -11.01101 -10.94542 -10.83600 -10.29316 -9.94705 -8.29797 -6.46555 -0.43946 0.72654 0.94114 1.40251 1.44916 1.45300 1.53051 1.59104 1.72923 2.29910 2.47697 2.59421 2.96783 3.05478 3.28527 3.42518 3.58257 3.70694 3.84967 3.89329 3.98999 4.02217 4.11127 4.16725 4.29180 4.42641 4.66129 4.78879 4.86341 4.90840 4.96414 5.03278 5.09307 5.09476 5.20806 5.41039 5.62241 5.62798 5.81435 6.13424 6.45850 6.62565 6.76560 7.20048 7.35253 8.82647 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.025731 B = 0.002110 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.921020 B =13265.720485 C =14124.176779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.696 5.696 11 C 0.498 3.502 12 O -0.584 6.584 13 C 0.058 3.942 14 O -0.332 6.332 15 C 0.555 3.445 16 O -0.502 6.502 17 C -0.073 4.073 18 N -0.492 5.492 19 C 0.211 3.789 20 O -0.181 6.181 21 C 0.068 3.932 22 C 0.143 3.857 23 H 0.123 0.877 24 C -0.146 4.146 25 C -0.145 4.145 26 C 0.035 3.965 27 O -0.388 6.388 28 H 0.269 0.731 29 H -0.009 1.009 30 H -0.008 1.008 31 H 0.414 0.586 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.313 0.687 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.141 -29.429 2.226 32.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.284 3.716 12 O -0.464 6.464 13 C -0.018 4.018 14 O -0.247 6.247 15 C 0.400 3.600 16 O -0.391 6.391 17 C -0.190 4.190 18 N -0.220 5.220 19 C -0.017 4.017 20 O -0.067 6.067 21 C 0.010 3.990 22 C 0.085 3.915 23 H 0.140 0.860 24 C -0.183 4.183 25 C -0.183 4.183 26 C -0.041 4.041 27 O -0.307 6.307 28 H 0.078 0.922 29 H 0.009 0.991 30 H 0.010 0.990 31 H 0.250 0.750 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.327 0.673 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.903 -29.021 2.049 31.826 hybrid contribution 0.416 0.856 0.025 0.952 sum 13.318 -28.165 2.074 31.224 Atomic orbital electron populations 1.70150 1.08302 1.28563 1.49928 1.26090 0.95802 1.03992 0.93874 0.85075 0.79120 0.77182 0.77603 1.17481 1.20569 1.20516 1.21636 0.94473 0.90250 1.52878 0.89410 1.18642 0.88614 0.83863 0.94542 1.46006 1.11767 1.04522 1.72530 1.20674 0.89256 0.84784 0.76892 1.90709 1.19092 1.85291 1.51345 1.22912 0.92617 0.78412 1.07860 1.86707 1.40418 1.14346 1.83214 1.19553 0.84625 0.83393 0.72436 1.90802 1.13503 1.87473 1.47336 1.20199 0.90554 0.91618 1.16668 1.70966 1.14541 1.18496 1.17978 1.29434 0.90685 0.85578 0.96042 1.84489 1.15990 1.37768 1.68448 1.23543 0.91912 0.85488 0.98030 1.21994 0.82833 0.93577 0.93093 0.85974 1.23041 1.00208 1.00769 0.94322 1.22969 0.99791 0.99649 0.95873 1.23784 0.84201 1.01815 0.94299 1.89194 1.38151 1.47844 1.55551 0.92222 0.99098 0.99026 0.74954 0.84875 0.85077 0.67278 0.90283 0.88413 0.87903 0.89165 0.90578 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -29.84 9.28 25.60 0.24 -29.60 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.27 14.58 5.43 85.63 0.46 15.04 16 10 N -0.70 -29.24 5.55 -466.79 -2.59 -31.83 16 11 C 0.50 20.79 7.91 87.66 0.69 21.48 16 12 O -0.58 -31.03 16.50 15.79 0.26 -30.77 16 13 C 0.06 1.75 5.95 71.24 0.42 2.18 16 14 O -0.33 -11.65 9.77 -50.52 -0.49 -12.14 16 15 C 0.56 16.68 7.96 70.20 0.56 17.23 16 16 O -0.50 -13.91 14.40 19.72 0.28 -13.62 16 17 C -0.07 -2.03 7.04 40.37 0.28 -1.74 16 18 N -0.49 -13.33 11.36 -305.21 -3.47 -16.80 16 19 C 0.21 3.43 13.19 130.53 1.72 5.15 16 20 O -0.18 -3.39 10.72 0.61 0.01 -3.38 16 21 C 0.07 1.52 6.28 25.20 0.16 1.68 16 22 C 0.14 2.65 3.48 30.35 0.11 2.76 16 23 H 0.12 2.46 5.96 -2.39 -0.01 2.44 16 24 C -0.15 -1.84 6.62 31.61 0.21 -1.63 16 25 C -0.15 -1.13 7.09 31.61 0.22 -0.91 16 26 C 0.03 0.36 7.63 72.48 0.55 0.91 16 27 O -0.39 -7.27 11.33 -148.92 -1.69 -8.96 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 32 H 0.13 3.13 8.14 -2.38 -0.02 3.11 16 33 H 0.13 3.14 8.14 -2.39 -0.02 3.13 16 34 H 0.31 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.08 1.01 7.86 -2.39 -0.02 0.99 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -83.95 356.47 1.05 -82.90 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.33 Total: 13.25 kcal Atomic # 6 Polarization: 27.01 SS G_CDS: 6.10 Total: 33.11 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -5.77 Total: -104.50 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: -1.63 Total: -68.88 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -83.95 1.05 -82.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321868645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.246 kcal (2) G-P(sol) polarization free energy of solvation -83.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds