Wall clock time and date at job start Tue Mar 31 2020 13:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47141 * 240.00126 * 3 2 1 5 5 H 1.48501 * 109.46928 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47408 * 119.99690 * 3 2 1 7 7 C 1.37883 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99509 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99864 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99942 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00184 * 180.02562 * 11 10 9 14 14 O 1.45200 * 109.47030 * 180.02562 * 13 11 10 15 15 C 1.34781 * 116.99520 * 179.97438 * 14 13 11 16 16 O 1.21533 * 120.00433 * 0.02562 * 15 14 13 17 17 C 1.47274 * 119.99766 * 180.02562 * 15 14 13 18 18 N 1.36105 * 126.45823 * 0.18352 * 17 15 14 19 19 C 1.29919 * 108.47255 * 180.27322 * 18 17 15 20 20 O 1.34054 * 109.26220 * 359.73358 * 19 18 17 21 21 C 1.34237 * 108.24201 * 0.02562 * 20 19 18 22 22 C 1.50699 * 126.53204 * 180.02562 * 21 20 19 23 23 H 1.09002 * 110.33114 * 195.72395 * 22 21 20 24 24 C 1.54483 * 110.37332 * 73.47221 * 22 21 20 25 25 C 1.54507 * 104.06211 * 217.08025 * 24 22 21 26 26 C 1.54477 * 104.06510 * 359.97438 * 25 24 22 27 27 O 1.44428 * 110.37357 * 317.97345 * 22 21 20 28 28 H 0.96998 * 119.99928 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47155 * 59.99912 * 9 7 2 30 30 H 1.09003 * 109.47019 * 300.00023 * 9 7 2 31 31 H 0.96994 * 120.00547 * 0.02562 * 10 9 7 32 32 H 1.08998 * 109.46839 * 60.00106 * 13 11 10 33 33 H 1.08999 * 109.46874 * 300.00905 * 13 11 10 34 34 H 1.07998 * 125.37380 * 179.70228 * 19 18 17 35 35 H 1.09005 * 110.50990 * 335.72749 * 24 22 21 36 36 H 1.09001 * 110.51072 * 98.43362 * 24 22 21 37 37 H 1.09000 * 110.50930 * 118.64837 * 25 24 22 38 38 H 1.09000 * 110.50918 * 241.21758 * 25 24 22 39 39 H 1.08996 * 110.37125 * 142.80919 * 26 25 24 40 40 H 1.08999 * 110.37544 * 265.03608 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 8 2.0072 -7.2863 0.0015 15 6 2.7413 -8.4166 0.0015 16 8 3.9550 -8.3530 0.0020 17 6 2.0727 -9.7288 0.0008 18 7 0.7301 -9.9525 -0.0034 19 6 0.5266 -11.2356 0.0033 20 8 1.7072 -11.8707 0.0059 21 6 2.6812 -10.9470 0.0012 22 6 4.1653 -11.2083 0.0014 23 1 4.7091 -10.3039 0.2741 24 6 4.6226 -11.7134 -1.3850 25 6 5.7084 -12.7643 -1.0623 26 6 5.7792 -12.7693 0.4808 27 8 4.4867 -12.2821 0.9124 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0009 32 1 3.3597 -5.9707 0.8917 33 1 3.3600 -5.9714 -0.8882 34 1 -0.4411 -11.7151 0.0068 35 1 3.7906 -12.1749 -1.9169 36 1 5.0443 -10.8956 -1.9694 37 1 5.4132 -13.7452 -1.4348 38 1 6.6663 -12.4672 -1.4893 39 1 5.9447 -13.7815 0.8497 40 1 6.5718 -12.1058 0.8265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321868647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:16 Heat of formation + Delta-G solvation = -136.352166 kcal Electronic energy + Delta-G solvation = -26409.388088 eV Core-core repulsion = 22191.696064 eV Total energy + Delta-G solvation = -4217.692024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.89663 -40.50395 -39.79017 -38.69150 -36.49628 -35.24979 -34.23176 -32.81312 -32.40059 -32.10561 -29.53962 -28.54861 -26.77742 -24.85381 -24.08909 -22.64570 -22.21908 -21.74631 -20.96152 -19.92755 -18.71744 -17.59087 -17.44975 -17.26855 -16.80368 -16.65685 -16.47417 -15.89229 -15.85174 -15.37138 -15.05271 -14.62113 -14.38763 -14.31359 -14.21776 -13.65087 -13.08166 -13.06806 -12.53072 -12.43283 -12.29110 -11.97907 -11.91814 -11.82211 -11.70255 -11.35617 -11.07778 -11.02925 -10.94678 -10.90866 -10.75026 -10.37395 -10.33809 -9.45883 -9.44492 -9.16334 -8.76780 -7.97196 -6.18236 -4.25842 0.47253 1.59060 1.95300 2.32745 2.71535 3.19615 3.24926 3.26145 3.29716 3.31168 3.62323 3.91828 3.96154 4.07680 4.33415 4.37736 4.45591 4.60069 4.70571 4.73325 4.96880 5.03177 5.09862 5.17343 5.18034 5.21111 5.31436 5.32976 5.34134 5.44126 5.48269 5.64568 6.13175 6.18629 7.02797 7.24266 7.32140 7.47619 7.50791 7.62851 7.93295 8.51139 8.72448 8.98093 9.40342 10.91814 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.025738 B = 0.002109 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.632281 B =13273.407473 C =14129.708257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.529 6.529 13 C 0.047 3.953 14 O -0.303 6.303 15 C 0.556 3.444 16 O -0.504 6.504 17 C -0.041 4.041 18 N -0.438 5.438 19 C 0.183 3.817 20 O -0.183 6.183 21 C 0.057 3.943 22 C 0.145 3.855 23 H 0.133 0.867 24 C -0.147 4.147 25 C -0.153 4.153 26 C 0.043 3.957 27 O -0.364 6.364 28 H 0.267 0.733 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.393 0.607 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -28.265 -1.833 30.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.405 6.405 13 C -0.031 4.031 14 O -0.216 6.216 15 C 0.400 3.600 16 O -0.394 6.394 17 C -0.159 4.159 18 N -0.165 5.165 19 C -0.046 4.046 20 O -0.068 6.068 21 C 0.000 4.000 22 C 0.088 3.912 23 H 0.150 0.850 24 C -0.185 4.185 25 C -0.190 4.190 26 C -0.033 4.033 27 O -0.283 6.283 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.278 0.722 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.101 -27.825 -1.659 29.648 hybrid contribution 1.326 0.620 -0.152 1.472 sum 11.427 -27.205 -1.810 29.563 Atomic orbital electron populations 1.69963 1.06112 1.27514 1.48553 1.24958 0.94941 0.99483 0.94635 0.86444 0.79383 0.82193 0.78699 1.20050 1.21062 1.20037 1.21167 0.93281 0.90302 1.53647 0.91813 1.19175 0.88157 0.81470 0.98062 1.46347 1.11489 1.05260 1.72620 1.19830 0.89113 0.83927 0.78976 1.90737 1.16230 1.84435 1.49141 1.22992 0.94553 0.80697 1.04822 1.86737 1.38945 1.13397 1.82493 1.19374 0.84513 0.83581 0.72578 1.90816 1.13858 1.87464 1.47264 1.20214 0.89924 0.91645 1.14128 1.71006 1.14287 1.16019 1.15187 1.28321 0.89726 0.86659 0.99864 1.84446 1.15776 1.38098 1.68527 1.23285 0.90972 0.86046 0.99682 1.21967 0.83983 0.94356 0.90924 0.84953 1.23015 0.99594 0.99779 0.96108 1.22948 0.99612 0.99978 0.96498 1.23545 0.85573 1.00625 0.93598 1.89280 1.36430 1.50111 1.52519 0.92313 0.95246 0.95231 0.77449 0.88165 0.88188 0.72229 0.90156 0.88941 0.90174 0.89707 0.88385 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.63 5.43 -5.19 -0.03 6.61 16 10 N -0.71 -14.73 5.55 -61.47 -0.34 -15.07 16 11 C 0.50 10.24 7.91 -10.98 -0.09 10.16 16 12 O -0.53 -13.40 16.50 -14.10 -0.23 -13.63 16 13 C 0.05 0.73 5.95 36.01 0.21 0.94 16 14 O -0.30 -5.26 9.77 -47.39 -0.46 -5.73 16 15 C 0.56 8.37 7.96 34.40 0.27 8.64 16 16 O -0.50 -7.23 14.37 -19.29 -0.28 -7.50 16 17 C -0.04 -0.56 7.04 -83.04 -0.58 -1.14 16 18 N -0.44 -5.94 11.36 -11.50 -0.13 -6.07 16 19 C 0.18 1.63 13.19 51.95 0.69 2.31 16 20 O -0.18 -1.83 10.72 6.55 0.07 -1.76 16 21 C 0.06 0.66 6.28 -35.05 -0.22 0.44 16 22 C 0.15 1.42 3.52 -27.11 -0.10 1.32 16 23 H 0.13 1.37 5.88 -51.93 -0.31 1.06 16 24 C -0.15 -1.04 6.62 -25.16 -0.17 -1.21 16 25 C -0.15 -0.78 7.09 -25.17 -0.18 -0.96 16 26 C 0.04 0.26 7.63 37.93 0.29 0.55 16 27 O -0.36 -3.65 11.35 -35.24 -0.40 -4.05 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.26 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -36.55 356.42 -5.82 -42.37 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.81 Total: 1.26 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -0.31 Total: 14.34 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.26 Total: -46.37 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.30 Total: -32.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.55 -5.82 -42.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321868647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.982 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds