Wall clock time and date at job start Tue Mar 31 2020 13:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47141 * 240.00126 * 3 2 1 5 5 H 1.48501 * 109.46928 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47408 * 119.99690 * 3 2 1 7 7 C 1.37883 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99509 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46888 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99864 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99942 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00184 * 180.02562 * 11 10 9 14 14 O 1.45200 * 109.47030 * 180.02562 * 13 11 10 15 15 C 1.34781 * 116.99520 * 179.97438 * 14 13 11 16 16 O 1.21533 * 120.00433 * 0.02562 * 15 14 13 17 17 C 1.47274 * 119.99766 * 180.02562 * 15 14 13 18 18 N 1.36105 * 126.45823 * 0.18352 * 17 15 14 19 19 C 1.29919 * 108.47255 * 180.27322 * 18 17 15 20 20 O 1.34054 * 109.26220 * 359.73358 * 19 18 17 21 21 C 1.34237 * 108.24201 * 0.02562 * 20 19 18 22 22 C 1.50699 * 126.53204 * 180.02562 * 21 20 19 23 23 H 1.09002 * 110.33114 * 195.72395 * 22 21 20 24 24 C 1.54483 * 110.37332 * 73.47221 * 22 21 20 25 25 C 1.54507 * 104.06211 * 217.08025 * 24 22 21 26 26 C 1.54477 * 104.06510 * 359.97438 * 25 24 22 27 27 O 1.44428 * 110.37357 * 317.97345 * 22 21 20 28 28 H 0.96998 * 119.99928 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47155 * 59.99912 * 9 7 2 30 30 H 1.09003 * 109.47019 * 300.00023 * 9 7 2 31 31 H 0.96994 * 120.00547 * 0.02562 * 10 9 7 32 32 H 1.08998 * 109.46839 * 60.00106 * 13 11 10 33 33 H 1.08999 * 109.46874 * 300.00905 * 13 11 10 34 34 H 1.07998 * 125.37380 * 179.70228 * 19 18 17 35 35 H 1.09005 * 110.50990 * 335.72749 * 24 22 21 36 36 H 1.09001 * 110.51072 * 98.43362 * 24 22 21 37 37 H 1.09000 * 110.50930 * 118.64837 * 25 24 22 38 38 H 1.09000 * 110.50918 * 241.21758 * 25 24 22 39 39 H 1.08996 * 110.37125 * 142.80919 * 26 25 24 40 40 H 1.08999 * 110.37544 * 265.03608 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 8 2.0072 -7.2863 0.0015 15 6 2.7413 -8.4166 0.0015 16 8 3.9550 -8.3530 0.0020 17 6 2.0727 -9.7288 0.0008 18 7 0.7301 -9.9525 -0.0034 19 6 0.5266 -11.2356 0.0033 20 8 1.7072 -11.8707 0.0059 21 6 2.6812 -10.9470 0.0012 22 6 4.1653 -11.2083 0.0014 23 1 4.7091 -10.3039 0.2741 24 6 4.6226 -11.7134 -1.3850 25 6 5.7084 -12.7643 -1.0623 26 6 5.7792 -12.7693 0.4808 27 8 4.4867 -12.2821 0.9124 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0009 32 1 3.3597 -5.9707 0.8917 33 1 3.3600 -5.9714 -0.8882 34 1 -0.4411 -11.7151 0.0068 35 1 3.7906 -12.1749 -1.9169 36 1 5.0443 -10.8956 -1.9694 37 1 5.4132 -13.7452 -1.4348 38 1 6.6663 -12.4672 -1.4893 39 1 5.9447 -13.7815 0.8497 40 1 6.5718 -12.1058 0.8265 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321868647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:15 Heat of formation + Delta-G solvation = -165.997293 kcal Electronic energy + Delta-G solvation = -26410.673597 eV Core-core repulsion = 22191.696064 eV Total energy + Delta-G solvation = -4218.977533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 324.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.72541 -41.71881 -40.46581 -40.31192 -37.73712 -36.20399 -36.12131 -34.42696 -33.46904 -32.75590 -31.00096 -29.47839 -28.49321 -25.91179 -24.77293 -24.53119 -22.96372 -22.47290 -21.84144 -21.67569 -19.78219 -19.12109 -18.50855 -18.24866 -17.88250 -17.64235 -17.40609 -17.25652 -16.98272 -16.50654 -16.47737 -16.19817 -15.89702 -15.12467 -14.82476 -14.74437 -14.58060 -14.26763 -14.09802 -13.83158 -13.72812 -13.00178 -12.96026 -12.83662 -12.68492 -12.66238 -12.45893 -12.24112 -12.19387 -12.01216 -11.86579 -11.62754 -11.52774 -11.01077 -10.94527 -10.80793 -10.29866 -9.94633 -8.29189 -6.46250 -0.44268 0.72550 0.93965 1.40201 1.44915 1.48327 1.53059 1.56768 1.72887 2.30029 2.47914 2.60575 2.96669 3.05757 3.28107 3.42504 3.58220 3.70629 3.84953 3.89236 3.98858 4.02105 4.11005 4.16785 4.29303 4.42625 4.66037 4.78896 4.86343 4.90919 4.96359 5.03296 5.09170 5.09436 5.20905 5.40809 5.61642 5.62397 5.81494 6.13315 6.45675 6.62266 6.76565 7.20130 7.35331 8.82752 Molecular weight = 324.12amu Principal moments of inertia in cm(-1) A = 0.025738 B = 0.002109 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.632281 B =13273.407473 C =14129.708257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.266 3.734 10 N -0.696 5.696 11 C 0.498 3.502 12 O -0.584 6.584 13 C 0.058 3.942 14 O -0.332 6.332 15 C 0.555 3.445 16 O -0.502 6.502 17 C -0.073 4.073 18 N -0.492 5.492 19 C 0.211 3.789 20 O -0.181 6.181 21 C 0.068 3.932 22 C 0.142 3.858 23 H 0.123 0.877 24 C -0.146 4.146 25 C -0.145 4.145 26 C 0.034 3.966 27 O -0.388 6.388 28 H 0.269 0.731 29 H -0.009 1.009 30 H -0.009 1.009 31 H 0.414 0.586 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.313 0.687 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.111 -29.461 -2.179 32.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.106 0.894 9 C 0.144 3.856 10 N -0.348 5.348 11 C 0.284 3.716 12 O -0.464 6.464 13 C -0.018 4.018 14 O -0.247 6.247 15 C 0.400 3.600 16 O -0.391 6.391 17 C -0.190 4.190 18 N -0.220 5.220 19 C -0.017 4.017 20 O -0.067 6.067 21 C 0.010 3.990 22 C 0.084 3.916 23 H 0.141 0.859 24 C -0.183 4.183 25 C -0.183 4.183 26 C -0.041 4.041 27 O -0.308 6.308 28 H 0.078 0.922 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.250 0.750 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.327 0.673 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.865 -29.043 -2.007 31.828 hybrid contribution 0.439 0.840 -0.025 0.948 sum 13.304 -28.203 -2.031 31.250 Atomic orbital electron populations 1.70133 1.08302 1.28699 1.49755 1.26091 0.95796 1.03981 0.93831 0.85174 0.77852 0.76447 0.79536 1.18575 1.21241 1.18615 1.21578 0.94464 0.90276 1.53161 0.89422 1.18632 0.88600 0.83837 0.94524 1.46006 1.11770 1.04523 1.72525 1.20676 0.89258 0.84785 0.76893 1.90710 1.19087 1.85293 1.51349 1.22912 0.92618 0.78412 1.07862 1.86710 1.40404 1.14346 1.83209 1.19555 0.84623 0.83400 0.72421 1.90798 1.13515 1.87455 1.47354 1.20206 0.90563 0.91631 1.16619 1.70963 1.14543 1.18499 1.17987 1.29435 0.90687 0.85578 0.96016 1.84488 1.15997 1.37774 1.68444 1.23556 0.91927 0.85474 0.98050 1.22015 0.82816 0.94280 0.92498 0.85941 1.23043 1.00239 1.00542 0.94512 1.22959 0.99770 0.99835 0.95693 1.23818 0.84235 1.01591 0.94478 1.89250 1.38280 1.50121 1.53121 0.92210 0.99056 0.99104 0.74955 0.85079 0.84871 0.67270 0.90248 0.88381 0.89174 0.87877 0.86771 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 2 C 0.00 0.15 5.46 84.66 0.46 0.62 16 3 Si 0.99 42.04 29.54 68.60 2.03 44.06 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.56 -30.00 9.28 25.60 0.24 -29.76 16 8 H 0.09 4.20 7.60 -2.91 -0.02 4.17 16 9 C 0.27 14.63 5.43 85.63 0.46 15.09 16 10 N -0.70 -29.27 5.55 -466.78 -2.59 -31.86 16 11 C 0.50 20.81 7.91 87.66 0.69 21.50 16 12 O -0.58 -31.06 16.50 15.77 0.26 -30.80 16 13 C 0.06 1.76 5.95 71.24 0.42 2.18 16 14 O -0.33 -11.66 9.77 -50.53 -0.49 -12.16 16 15 C 0.56 16.72 7.96 70.20 0.56 17.28 16 16 O -0.50 -13.96 14.37 19.73 0.28 -13.68 16 17 C -0.07 -2.03 7.04 40.38 0.28 -1.74 16 18 N -0.49 -13.35 11.36 -305.22 -3.47 -16.81 16 19 C 0.21 3.43 13.19 130.53 1.72 5.16 16 20 O -0.18 -3.39 10.72 0.55 0.01 -3.38 16 21 C 0.07 1.52 6.28 25.20 0.16 1.68 16 22 C 0.14 2.63 3.52 30.35 0.11 2.74 16 23 H 0.12 2.48 5.88 -2.39 -0.01 2.46 16 24 C -0.15 -1.83 6.62 31.61 0.21 -1.62 16 25 C -0.15 -1.12 7.09 31.61 0.22 -0.90 16 26 C 0.03 0.35 7.63 72.48 0.55 0.91 16 27 O -0.39 -7.33 11.35 -148.97 -1.69 -9.02 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 29 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.41 13.75 8.32 -92.71 -0.77 12.98 16 32 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.31 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.08 1.00 7.87 -2.38 -0.02 0.98 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -83.98 356.42 1.04 -82.94 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.33 Total: 13.45 kcal Atomic # 6 Polarization: 27.03 SS G_CDS: 6.10 Total: 33.13 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -5.77 Total: -104.56 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: -1.63 Total: -69.03 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -83.98 1.04 -82.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321868647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.055 kcal (2) G-P(sol) polarization free energy of solvation -83.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds