Wall clock time and date at job start Tue Mar 31 2020 13:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99792 * 2 1 4 4 H 1.48507 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47154 * 299.99303 * 3 2 1 6 6 H 1.48499 * 109.47230 * 59.99896 * 3 2 1 7 7 C 1.37877 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00109 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.52396 * 60.07795 * 9 7 2 11 11 C 1.53033 * 109.49944 * 180.16156 * 9 7 2 12 12 C 1.53042 * 109.53872 * 181.31639 * 11 9 7 13 13 C 1.53188 * 109.31498 * 298.63312 * 12 11 9 14 14 N 1.46930 * 108.77348 * 54.63648 * 13 12 11 15 15 C 1.34772 * 120.63433 * 126.36887 * 14 13 12 16 16 O 1.21571 * 120.00580 * 174.98149 * 15 14 13 17 17 N 1.34783 * 119.99704 * 354.98766 * 15 14 13 18 18 C 1.38374 * 119.99681 * 185.10751 * 17 15 14 19 19 N 1.30126 * 124.74063 * 359.69966 * 18 17 15 20 20 C 1.30875 * 117.28597 * 179.76574 * 19 18 17 21 21 C 1.36718 * 114.01902 * 0.51311 * 20 19 18 22 22 C 1.46312 * 126.12088 * 179.72624 * 21 20 19 23 23 N 1.34772 * 120.00207 * 180.02562 * 22 21 20 24 24 O 1.21740 * 119.99948 * 0.03513 * 22 21 20 25 25 S 1.70914 * 124.73979 * 179.97438 * 18 17 15 26 26 C 1.46925 * 118.73752 * 306.39098 * 14 13 12 27 27 H 0.97000 * 119.99804 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46353 * 61.30081 * 11 9 7 29 29 H 1.08998 * 109.44860 * 301.32875 * 11 9 7 30 30 H 1.09007 * 109.49649 * 178.68103 * 12 11 9 31 31 H 1.09004 * 109.49862 * 58.59052 * 12 11 9 32 32 H 1.08996 * 109.58982 * 294.84703 * 13 12 11 33 33 H 1.09000 * 109.70915 * 174.49073 * 13 12 11 34 34 H 0.96992 * 119.99763 * 5.10972 * 17 15 14 35 35 H 1.08001 * 122.99259 * 180.26539 * 20 19 18 36 36 H 0.97002 * 120.00139 * 0.02562 * 23 22 21 37 37 H 0.97001 * 119.99869 * 180.02562 * 23 22 21 38 38 H 1.09000 * 109.58877 * 173.39536 * 26 14 13 39 39 H 1.09005 * 109.58879 * 293.82264 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6255 -2.5586 -0.8901 11 6 2.2450 -3.6627 0.0052 12 6 1.4812 -4.9885 -0.0279 13 6 0.6024 -5.0983 1.2220 14 7 -0.2565 -3.9089 1.3022 15 6 -1.5932 -4.0337 1.4202 16 8 -2.2845 -3.0461 1.5773 17 7 -2.1636 -5.2536 1.3642 18 6 -3.5420 -5.3742 1.3790 19 7 -4.3730 -4.3753 1.4505 20 6 -5.6511 -4.6569 1.4495 21 6 -5.9262 -5.9945 1.3826 22 6 -7.2572 -6.6018 1.3709 23 7 -7.3862 -7.9415 1.3022 24 8 -8.2484 -5.8968 1.4231 25 16 -4.3909 -6.8561 1.3127 26 6 0.3696 -2.5807 1.2508 27 1 -0.4850 0.8401 -0.0004 28 1 2.8536 -3.6169 0.9084 29 1 2.8896 -3.5930 -0.8710 30 1 2.1900 -5.8164 -0.0482 31 1 0.8535 -5.0246 -0.9183 32 1 1.2337 -5.1536 2.1089 33 1 -0.0173 -5.9927 1.1583 34 1 -1.6079 -6.0469 1.3135 35 1 -6.4200 -3.9003 1.5012 36 1 -6.5965 -8.5033 1.2609 37 1 -8.2687 -8.3441 1.2940 38 1 -0.4035 -1.8138 1.2034 39 1 0.9820 -2.4307 2.1400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364182009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:53 Heat of formation + Delta-G solvation = -4.388722 kcal Electronic energy + Delta-G solvation = -24794.149084 eV Core-core repulsion = 21057.225047 eV Total energy + Delta-G solvation = -3736.924037 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70951 -39.78529 -38.80168 -37.01547 -34.88269 -33.95716 -33.37002 -31.90851 -30.01082 -29.60326 -26.20424 -25.16417 -24.37965 -22.80176 -21.98560 -21.16966 -19.84452 -19.39396 -18.73883 -17.75278 -17.53219 -16.45187 -16.12482 -16.03581 -15.75762 -14.99136 -14.96005 -14.64172 -14.34506 -14.03458 -13.98886 -13.91924 -13.54990 -12.89387 -12.70115 -12.37528 -12.07111 -11.80536 -11.09512 -11.00982 -10.85661 -10.61756 -10.54946 -10.49067 -10.30184 -10.04461 -10.04244 -9.99493 -9.59158 -9.31654 -9.20330 -9.02912 -8.49481 -8.36902 -7.85467 -6.03638 -4.13044 0.18711 0.63027 1.31466 2.40675 2.61847 3.10484 3.24918 3.28765 3.37400 3.39675 3.60403 3.83324 4.39944 4.50158 4.79492 4.99403 5.15304 5.26106 5.30922 5.43104 5.74710 5.82694 5.98486 6.09416 6.18333 6.33049 6.44065 6.50908 6.61734 6.81187 6.87750 6.94769 7.12087 7.14173 7.56886 7.71061 7.81632 7.94445 7.95711 8.19596 8.32875 8.85029 8.91973 9.53280 11.01565 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.002973 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.426960 B = 9417.251645 C =10511.649758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.111 3.889 14 N -0.612 5.612 15 C 0.688 3.312 16 O -0.510 6.510 17 N -0.642 5.642 18 C 0.334 3.666 19 N -0.481 5.481 20 C 0.180 3.820 21 C -0.347 4.347 22 C 0.613 3.387 23 N -0.853 5.853 24 O -0.536 6.536 25 S 0.132 5.868 26 C 0.128 3.872 27 H 0.264 0.736 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.415 0.585 35 H 0.192 0.808 36 H 0.398 0.602 37 H 0.407 0.593 38 H 0.125 0.875 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 -20.819 2.922 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.013 4.013 14 N -0.350 5.350 15 C 0.387 3.613 16 O -0.379 6.379 17 N -0.297 5.297 18 C -0.035 4.035 19 N -0.201 5.201 20 C 0.019 3.981 21 C -0.473 4.473 22 C 0.398 3.602 23 N -0.417 5.417 24 O -0.414 6.414 25 S 0.383 5.617 26 C 0.008 3.992 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.209 0.791 36 H 0.226 0.774 37 H 0.238 0.762 38 H 0.143 0.857 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.314 -19.784 3.045 20.990 hybrid contribution 0.313 0.544 -0.060 0.631 sum -6.001 -19.240 2.985 20.374 Atomic orbital electron populations 1.69878 1.05726 1.26946 1.48958 1.25068 0.94892 0.99351 0.94734 0.86530 0.79985 0.83755 0.77701 1.19796 1.20987 1.20919 1.21076 0.92941 0.89947 1.52132 0.92213 1.19005 0.92585 0.92436 0.93970 0.95256 1.21623 0.98576 0.93817 1.00811 1.21960 0.98648 0.99496 0.97125 1.21610 0.93475 0.86761 0.99422 1.47954 1.02531 1.09644 1.74826 1.16044 0.83215 0.82246 0.79787 1.91090 1.60590 1.34550 1.51681 1.42790 1.01541 1.10855 1.74545 1.23815 0.89965 0.92475 0.97203 1.66513 1.01588 1.30440 1.21608 1.22495 0.91650 0.93514 0.90418 1.25367 0.95836 0.97493 1.28644 1.16533 0.86500 0.82101 0.75043 1.43688 1.12465 1.06859 1.78674 1.90896 1.38124 1.61711 1.50672 1.83455 0.97944 1.08536 1.71773 1.22376 0.98494 0.79668 0.98688 0.92543 0.93000 0.92805 0.91977 0.92040 0.91319 0.92600 0.74460 0.79133 0.77381 0.76187 0.85700 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.29 11.39 55.43 0.63 -24.66 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -13.70 8.56 -34.44 -0.29 -14.00 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.93 2.25 -91.66 -0.21 0.72 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.03 5.11 -26.69 -0.14 -2.17 16 12 C -0.13 -1.90 6.08 -26.61 -0.16 -2.06 16 13 C 0.11 1.49 6.43 -3.71 -0.02 1.46 16 14 N -0.61 -11.42 2.97 -178.50 -0.53 -11.95 16 15 C 0.69 13.44 8.25 -86.92 -0.72 12.72 16 16 O -0.51 -12.58 14.39 5.30 0.08 -12.50 16 17 N -0.64 -9.16 5.29 -17.55 -0.09 -9.25 16 18 C 0.33 4.81 7.98 -87.55 -0.70 4.11 16 19 N -0.48 -8.38 8.57 -14.65 -0.13 -8.50 16 20 C 0.18 2.61 11.15 -18.51 -0.21 2.41 16 21 C -0.35 -4.17 6.50 -36.89 -0.24 -4.41 16 22 C 0.61 7.09 8.05 -13.02 -0.10 6.98 16 23 N -0.85 -5.90 8.87 30.18 0.27 -5.63 16 24 O -0.54 -8.17 17.70 5.15 0.09 -8.08 16 25 S 0.13 1.24 22.33 -107.50 -2.40 -1.16 16 26 C 0.13 2.95 5.39 -3.71 -0.02 2.93 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.53 5.56 -51.93 -0.29 0.24 16 34 H 0.42 4.12 6.28 -40.82 -0.26 3.86 16 35 H 0.19 2.57 8.06 -52.49 -0.42 2.14 16 36 H 0.40 1.83 8.00 -40.82 -0.33 1.50 16 37 H 0.41 2.12 8.93 -40.82 -0.36 1.76 16 38 H 0.13 3.46 5.15 -51.93 -0.27 3.19 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -35.39 338.45 -9.33 -44.72 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.43 Total: 5.65 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -2.90 Total: 10.32 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.15 Total: -60.00 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.17 Total: -20.58 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.40 Total: -1.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.39 -9.33 -44.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364182009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.332 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds