Wall clock time and date at job start Tue Mar 31 2020 14:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 H 1.09003 * 109.46861 * 304.52002 * 3 2 1 5 5 C 1.50692 * 109.47130 * 184.51540 * 3 2 1 6 6 H 1.08001 * 119.99859 * 239.99983 * 5 3 2 7 7 C 1.37875 * 119.99909 * 60.00157 * 5 3 2 8 8 N 1.31512 * 120.00311 * 359.97438 * 7 5 3 9 9 Si 1.86812 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46772 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47228 * 119.99816 * 9 7 5 12 12 H 1.48496 * 109.46834 * 240.00325 * 9 7 5 13 13 N 1.46502 * 109.46607 * 64.51479 * 3 2 1 14 14 S 1.65600 * 119.99445 * 215.48619 * 13 3 2 15 15 O 1.42092 * 106.40748 * 308.53793 * 14 13 3 16 16 O 1.42107 * 106.40265 * 175.61427 * 14 13 3 17 17 C 1.76199 * 107.21917 * 62.08042 * 14 13 3 18 18 C 1.38665 * 126.17530 * 270.11383 * 17 14 13 19 19 C 1.50699 * 125.50368 * 0.08141 * 18 17 14 20 20 N 1.31408 * 108.99438 * 180.02562 * 18 17 14 21 21 N 1.39942 * 108.83604 * 0.02562 * 20 18 17 22 22 C 1.36518 * 132.56875 * 179.71557 * 21 20 18 23 23 C 1.35535 * 119.12036 * 179.89465 * 22 21 20 24 24 C 1.40242 * 119.45402 * 0.41465 * 23 22 21 25 25 N 1.31217 * 120.27678 * 359.78397 * 24 23 22 26 26 C 1.33977 * 120.81774 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47445 * 64.17421 * 1 2 3 28 28 H 1.09001 * 109.47191 * 184.17367 * 1 2 3 29 29 H 1.08996 * 109.47084 * 304.17102 * 1 2 3 30 30 H 1.09002 * 109.47025 * 239.99995 * 2 1 3 31 31 H 1.09000 * 109.47260 * 120.00375 * 2 1 3 32 32 H 0.97002 * 120.00346 * 180.02562 * 8 7 5 33 33 H 0.96994 * 120.00621 * 35.49800 * 13 3 2 34 34 H 1.09001 * 109.47367 * 84.17624 * 19 18 17 35 35 H 1.09000 * 109.47444 * 204.18386 * 19 18 17 36 36 H 1.08999 * 109.46818 * 324.17885 * 19 18 17 37 37 H 1.07995 * 120.44108 * 0.30838 * 22 21 20 38 38 H 1.08004 * 120.27094 * 180.19765 * 23 22 21 39 39 H 1.07992 * 119.85919 * 179.81620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1419 1.8907 0.6678 7 6 4.1529 0.8750 -1.2096 8 7 3.4235 0.3305 -2.1588 9 14 6.0159 0.8761 -1.3479 10 1 6.6002 1.5446 -0.1576 11 1 6.5077 -0.5232 -1.4216 12 1 6.4206 1.6084 -2.5747 13 7 1.6425 2.1009 1.2469 14 16 1.2341 3.7058 1.2419 15 8 2.2974 4.3885 0.5921 16 8 0.8033 4.0143 2.5605 17 6 -0.1783 3.8814 0.2033 18 6 -0.1653 4.1283 -1.1612 19 6 1.0697 4.2907 -2.0094 20 7 -1.4037 4.1967 -1.5953 21 7 -2.2723 3.9950 -0.5168 22 6 -3.6338 3.9716 -0.4194 23 6 -4.2049 3.7451 0.7888 24 6 -3.3880 3.5490 1.9117 25 7 -2.0816 3.5802 1.7931 26 6 -1.5055 3.7993 0.6035 27 1 -0.3634 0.4477 -0.9250 28 1 -0.3634 -1.0249 0.0748 29 1 -0.3633 0.5772 0.8502 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8527 -0.0701 -2.9309 33 1 1.6185 1.5970 2.0753 34 1 1.4345 3.3091 -2.3118 35 1 0.8272 4.8771 -2.8957 36 1 1.8406 4.8035 -1.4343 37 1 -4.2477 4.1247 -1.2946 38 1 -5.2802 3.7195 0.8865 39 1 -3.8361 3.3711 2.8780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364816211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:02 Heat of formation + Delta-G solvation = 39.457455 kcal Electronic energy + Delta-G solvation = -26636.550294 eV Core-core repulsion = 22901.527569 eV Total energy + Delta-G solvation = -3735.022724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41258 -38.33304 -36.35192 -35.80373 -34.94164 -34.37281 -32.08771 -32.08614 -30.52940 -29.51149 -28.09184 -26.53402 -24.62086 -23.38294 -22.98381 -20.89635 -20.11264 -18.90729 -18.17707 -17.50945 -16.89715 -16.70206 -16.22833 -16.00182 -15.39804 -15.14466 -14.52620 -14.29351 -13.66301 -13.34749 -13.32299 -13.04964 -12.94714 -12.90262 -12.30098 -12.25731 -11.79111 -11.67734 -11.51186 -11.31335 -11.15287 -11.13168 -10.94570 -10.83958 -10.73539 -10.32106 -10.13412 -9.97016 -9.76576 -9.75211 -9.59387 -9.38453 -8.40535 -8.37293 -8.10086 -6.01674 -4.07148 0.27035 0.64241 1.36668 1.95857 2.38433 3.16135 3.33827 3.42077 3.49068 3.63484 3.87237 4.09753 4.16250 4.47098 4.56248 4.63189 4.79780 4.96004 5.08290 5.21405 5.27839 5.66628 5.75633 5.94653 6.09994 6.14515 6.18551 6.21175 6.34146 6.39231 6.59796 6.76143 6.83909 6.98465 7.17886 7.32473 7.40854 7.65875 7.70294 7.98011 8.20815 8.31724 8.97650 9.58770 11.02687 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.004926 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.005571 B = 5682.330141 C = 5791.573645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.279 3.721 4 H 0.043 0.957 5 C -0.514 4.514 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.283 1.283 13 N -1.102 6.102 14 S 2.724 3.276 15 O -0.953 6.953 16 O -0.976 6.976 17 C -0.801 4.801 18 C 0.223 3.777 19 C -0.115 4.115 20 N -0.319 5.319 21 N -0.305 5.305 22 C 0.168 3.832 23 C -0.233 4.233 24 C 0.190 3.810 25 N -0.453 5.453 26 C 0.361 3.639 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.404 0.596 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.296 4.582 3.194 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.175 3.825 4 H 0.060 0.940 5 C -0.553 4.553 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.863 5.863 14 S 2.808 3.192 15 O -0.943 6.943 16 O -0.966 6.966 17 C -0.898 4.898 18 C 0.061 3.939 19 C -0.173 4.173 20 N -0.143 5.143 21 N -0.072 5.072 22 C 0.031 3.969 23 C -0.256 4.256 24 C 0.007 3.993 25 N -0.164 5.164 26 C 0.129 3.871 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.123 0.877 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.237 0.763 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.139 0.861 37 H 0.199 0.801 38 H 0.188 0.812 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.831 5.369 2.755 16.942 hybrid contribution -0.044 -0.648 -0.357 0.741 sum -15.874 4.721 2.397 16.734 Atomic orbital electron populations 1.21811 0.99456 0.99150 0.99892 1.21872 0.91559 0.99807 1.03300 1.18565 0.94588 0.89997 0.79339 0.93974 1.21605 0.91252 1.36621 1.05850 0.91587 1.24881 0.98361 0.95082 0.95511 1.69850 1.34921 1.38946 1.09772 0.86485 0.85560 0.77425 0.78259 1.19587 1.21239 1.20940 1.55542 1.82916 1.29835 1.17993 1.00923 0.72631 0.73266 0.72335 1.93526 1.51266 1.72677 1.76818 1.93517 1.83213 1.83747 1.36147 1.31435 1.12823 1.35675 1.09844 1.22086 0.94039 0.86713 0.91027 1.21045 0.91177 1.06126 0.98962 1.77938 0.99321 1.32692 1.04388 1.47628 1.06052 1.43903 1.09571 1.22168 0.80685 0.93357 1.00676 1.21905 1.03260 1.08535 0.91935 1.23626 0.88107 0.87838 0.99750 1.68501 1.12646 1.15367 1.19846 1.19968 0.91192 0.93325 0.82663 0.94360 0.94686 0.94395 0.87658 0.94000 0.92873 0.76279 0.87055 0.90251 0.86123 0.80146 0.81214 0.79765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.85 37.16 0.37 -2.47 16 2 C -0.13 -2.81 5.37 -26.73 -0.14 -2.95 16 3 C 0.28 6.59 2.18 -69.09 -0.15 6.44 16 4 H 0.04 1.04 5.52 -51.93 -0.29 0.75 16 5 C -0.51 -13.59 8.84 -34.45 -0.30 -13.89 16 6 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 8 N -0.90 -23.97 11.29 55.43 0.63 -23.34 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -1.10 -23.30 4.81 -5.88 -0.03 -23.33 16 14 S 2.72 57.86 5.75 -107.50 -0.62 57.25 16 15 O -0.95 -22.17 15.23 -57.17 -0.87 -23.04 16 16 O -0.98 -21.68 17.66 -57.17 -1.01 -22.69 16 17 C -0.80 -15.81 5.91 -39.19 -0.23 -16.04 16 18 C 0.22 4.23 6.87 -82.62 -0.57 3.67 16 19 C -0.11 -2.06 9.50 36.01 0.34 -1.72 16 20 N -0.32 -5.65 12.66 33.52 0.42 -5.23 16 21 N -0.31 -4.75 3.90 -12.20 -0.05 -4.80 16 22 C 0.17 1.65 11.30 -16.43 -0.19 1.47 16 23 C -0.23 -1.65 10.05 -39.79 -0.40 -2.05 16 24 C 0.19 1.83 11.27 -17.06 -0.19 1.64 16 25 N -0.45 -7.09 10.26 -12.21 -0.13 -7.22 16 26 C 0.36 6.41 7.72 -155.52 -1.20 5.21 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.70 7.62 -51.93 -0.40 0.31 16 30 H 0.11 2.62 5.96 -51.93 -0.31 2.31 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.40 7.71 8.84 -34.47 -0.30 7.41 16 34 H 0.11 2.16 6.84 -51.93 -0.36 1.80 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.12 2.28 5.89 -51.93 -0.31 1.97 16 37 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.17 0.40 8.06 -52.48 -0.42 -0.03 16 39 H 0.19 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 340.11 15.07 5.13 5.13 Total: -1.00 -34.90 340.11 -8.77 -43.67 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.46 Total: 6.71 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.76 Total: -19.13 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: 0.85 Total: -63.91 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -1.88 Total: -45.74 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 57.86 SS G_CDS: -0.62 Total: 57.25 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.90 -8.77 -43.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364816211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.123 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds