Wall clock time and date at job start Tue Mar 31 2020 14:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 H 1.09003 * 109.46861 * 304.52002 * 3 2 1 5 5 C 1.50692 * 109.47130 * 184.51540 * 3 2 1 6 6 H 1.08001 * 119.99859 * 239.99983 * 5 3 2 7 7 C 1.37875 * 119.99909 * 60.00157 * 5 3 2 8 8 N 1.31512 * 120.00311 * 359.97438 * 7 5 3 9 9 Si 1.86812 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46772 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47228 * 119.99816 * 9 7 5 12 12 H 1.48496 * 109.46834 * 240.00325 * 9 7 5 13 13 N 1.46502 * 109.46607 * 64.51479 * 3 2 1 14 14 S 1.65600 * 119.99445 * 215.48619 * 13 3 2 15 15 O 1.42092 * 106.40748 * 308.53793 * 14 13 3 16 16 O 1.42107 * 106.40265 * 175.61427 * 14 13 3 17 17 C 1.76199 * 107.21917 * 62.08042 * 14 13 3 18 18 C 1.38665 * 126.17530 * 270.11383 * 17 14 13 19 19 C 1.50699 * 125.50368 * 0.08141 * 18 17 14 20 20 N 1.31408 * 108.99438 * 180.02562 * 18 17 14 21 21 N 1.39942 * 108.83604 * 0.02562 * 20 18 17 22 22 C 1.36518 * 132.56875 * 179.71557 * 21 20 18 23 23 C 1.35535 * 119.12036 * 179.89465 * 22 21 20 24 24 C 1.40242 * 119.45402 * 0.41465 * 23 22 21 25 25 N 1.31217 * 120.27678 * 359.78397 * 24 23 22 26 26 C 1.33977 * 120.81774 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47445 * 64.17421 * 1 2 3 28 28 H 1.09001 * 109.47191 * 184.17367 * 1 2 3 29 29 H 1.08996 * 109.47084 * 304.17102 * 1 2 3 30 30 H 1.09002 * 109.47025 * 239.99995 * 2 1 3 31 31 H 1.09000 * 109.47260 * 120.00375 * 2 1 3 32 32 H 0.97002 * 120.00346 * 180.02562 * 8 7 5 33 33 H 0.96994 * 120.00621 * 35.49800 * 13 3 2 34 34 H 1.09001 * 109.47367 * 84.17624 * 19 18 17 35 35 H 1.09000 * 109.47444 * 204.18386 * 19 18 17 36 36 H 1.08999 * 109.46818 * 324.17885 * 19 18 17 37 37 H 1.07995 * 120.44108 * 0.30838 * 22 21 20 38 38 H 1.08004 * 120.27094 * 180.19765 * 23 22 21 39 39 H 1.07992 * 119.85919 * 179.81620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1419 1.8907 0.6678 7 6 4.1529 0.8750 -1.2096 8 7 3.4235 0.3305 -2.1588 9 14 6.0159 0.8761 -1.3479 10 1 6.6002 1.5446 -0.1576 11 1 6.5077 -0.5232 -1.4216 12 1 6.4206 1.6084 -2.5747 13 7 1.6425 2.1009 1.2469 14 16 1.2341 3.7058 1.2419 15 8 2.2974 4.3885 0.5921 16 8 0.8033 4.0143 2.5605 17 6 -0.1783 3.8814 0.2033 18 6 -0.1653 4.1283 -1.1612 19 6 1.0697 4.2907 -2.0094 20 7 -1.4037 4.1967 -1.5953 21 7 -2.2723 3.9950 -0.5168 22 6 -3.6338 3.9716 -0.4194 23 6 -4.2049 3.7451 0.7888 24 6 -3.3880 3.5490 1.9117 25 7 -2.0816 3.5802 1.7931 26 6 -1.5055 3.7993 0.6035 27 1 -0.3634 0.4477 -0.9250 28 1 -0.3634 -1.0249 0.0748 29 1 -0.3633 0.5772 0.8502 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8527 -0.0701 -2.9309 33 1 1.6185 1.5970 2.0753 34 1 1.4345 3.3091 -2.3118 35 1 0.8272 4.8771 -2.8957 36 1 1.8406 4.8035 -1.4343 37 1 -4.2477 4.1247 -1.2946 38 1 -5.2802 3.7195 0.8865 39 1 -3.8361 3.3711 2.8780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364816211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:01 Heat of formation + Delta-G solvation = 12.858830 kcal Electronic energy + Delta-G solvation = -26637.703696 eV Core-core repulsion = 22901.527569 eV Total energy + Delta-G solvation = -3736.176127 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.50479 -39.39382 -38.06313 -37.59807 -36.66311 -35.40953 -34.07210 -33.15246 -32.22929 -30.69863 -29.29967 -28.45993 -25.54685 -24.85446 -24.48833 -22.16065 -21.90533 -20.34358 -19.41634 -18.70967 -18.51398 -18.25186 -17.58898 -17.26831 -16.99323 -16.36735 -16.23292 -15.44937 -15.25838 -14.86613 -14.67175 -14.60802 -14.29369 -14.14395 -13.63489 -13.54296 -13.37672 -13.28512 -13.07623 -13.01119 -12.90301 -12.69495 -12.65406 -12.57906 -12.28062 -12.03045 -11.80084 -11.60702 -11.53531 -11.41274 -10.95421 -10.51738 -10.39543 -9.94510 -9.55524 -8.03917 -6.15373 -0.62746 -0.31054 -0.19331 0.93388 1.05387 1.44575 1.48396 1.59452 2.21772 2.44237 2.53774 2.64670 2.87035 3.04053 3.22512 3.42268 3.51980 3.76024 4.00974 4.19426 4.31146 4.43446 4.53430 4.54609 4.62680 4.67307 4.73522 4.83980 4.89120 4.99810 5.10862 5.24643 5.29193 5.39975 5.47959 5.73401 5.82438 6.05089 6.11199 6.34124 6.46259 6.51764 6.91135 7.52417 8.98717 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018320 B = 0.004926 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.005571 B = 5682.330141 C = 5791.573645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.120 4.120 3 C 0.285 3.715 4 H 0.030 0.970 5 C -0.533 4.533 6 H 0.050 0.950 7 C 0.026 3.974 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.280 1.280 13 N -1.102 6.102 14 S 2.736 3.264 15 O -0.986 6.986 16 O -0.991 6.991 17 C -0.838 4.838 18 C 0.209 3.791 19 C -0.110 4.110 20 N -0.332 5.332 21 N -0.308 5.308 22 C 0.145 3.855 23 C -0.191 4.191 24 C 0.198 3.802 25 N -0.503 5.503 26 C 0.356 3.644 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.411 0.589 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.220 0.780 38 H 0.234 0.766 39 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.088 4.281 3.820 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C 0.180 3.820 4 H 0.048 0.952 5 C -0.573 4.573 6 H 0.068 0.932 7 C -0.174 4.174 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.206 1.206 13 N -0.862 5.862 14 S 2.825 3.175 15 O -0.976 6.976 16 O -0.982 6.982 17 C -0.939 4.939 18 C 0.047 3.953 19 C -0.168 4.168 20 N -0.156 5.156 21 N -0.075 5.075 22 C 0.010 3.990 23 C -0.214 4.214 24 C 0.019 3.981 25 N -0.217 5.217 26 C 0.121 3.879 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.245 0.755 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.237 0.763 38 H 0.251 0.749 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -19.646 5.056 3.415 20.572 hybrid contribution 0.768 -0.532 -0.436 1.031 sum -18.878 4.524 2.979 19.640 Atomic orbital electron populations 1.21655 0.97054 1.00606 0.99636 1.21713 0.93677 0.98460 1.02186 1.18340 0.93034 0.90769 0.79862 0.95240 1.21827 0.92922 1.36793 1.05752 0.93193 1.25452 1.01667 0.94930 0.95327 1.69938 1.36023 1.39114 1.09939 0.85722 0.81655 0.77670 0.77899 1.20092 1.20261 1.20606 1.55367 1.83403 1.29802 1.17617 1.00125 0.72655 0.72749 0.72013 1.93477 1.53499 1.73366 1.77284 1.93475 1.83556 1.83885 1.37248 1.30855 1.13184 1.39940 1.09960 1.22020 0.94611 0.87682 0.90982 1.20895 0.91117 1.04999 0.99791 1.77757 0.98990 1.33249 1.05593 1.47771 1.07719 1.43736 1.08242 1.23289 0.78634 0.93412 1.03638 1.22681 1.05808 1.03406 0.89468 1.24713 0.86510 0.84070 1.02775 1.68582 1.15762 1.18327 1.18978 1.19916 0.90957 0.93067 0.83997 0.95428 0.92352 0.93657 0.90105 0.93628 0.92698 0.75464 0.89282 0.87707 0.87775 0.76293 0.74926 0.75069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.85 71.98 0.71 -4.38 16 2 C -0.12 -5.49 5.37 30.60 0.16 -5.32 16 3 C 0.28 14.00 2.18 44.24 0.10 14.10 16 4 H 0.03 1.55 5.52 -2.39 -0.01 1.54 16 5 C -0.53 -29.34 8.84 25.60 0.23 -29.11 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 7 C 0.03 1.41 5.29 84.65 0.45 1.85 16 8 N -0.91 -49.95 11.29 21.45 0.24 -49.71 16 9 Si 0.94 44.03 29.54 68.60 2.03 46.05 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -1.10 -48.50 4.81 -172.53 -0.83 -49.33 16 14 S 2.74 121.91 5.75 -56.49 -0.32 121.59 16 15 O -0.99 -48.98 15.23 -128.00 -1.95 -50.93 16 16 O -0.99 -45.47 17.66 -128.00 -2.26 -47.73 16 17 C -0.84 -34.12 5.91 22.52 0.13 -33.99 16 18 C 0.21 8.25 6.87 42.72 0.29 8.54 16 19 C -0.11 -4.22 9.50 71.24 0.68 -3.54 16 20 N -0.33 -11.71 12.66 -47.85 -0.61 -12.32 16 21 N -0.31 -9.06 3.90 -192.51 -0.75 -9.81 16 22 C 0.14 2.20 11.30 83.34 0.94 3.14 16 23 C -0.19 -1.49 10.05 22.13 0.22 -1.26 16 24 C 0.20 2.84 11.27 85.27 0.96 3.80 16 25 N -0.50 -14.71 10.26 -192.56 -1.98 -16.69 16 26 C 0.36 12.40 7.72 133.14 1.03 13.43 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.66 7.62 -2.39 -0.02 1.64 16 30 H 0.08 4.11 5.96 -2.39 -0.01 4.10 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.41 16.26 8.84 -96.75 -0.86 15.41 16 34 H 0.09 3.76 6.84 -2.39 -0.02 3.74 16 35 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.10 4.29 5.89 -2.39 -0.01 4.27 16 37 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.23 -1.08 8.06 -2.91 -0.02 -1.10 16 39 H 0.23 0.91 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -81.55 340.11 -0.28 -81.83 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.25 Total: 19.79 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 5.90 Total: -32.74 kcal Atomic # 7 Polarization: -133.94 SS G_CDS: -3.92 Total: -137.86 kcal Atomic # 8 Polarization: -94.45 SS G_CDS: -4.21 Total: -98.66 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 121.91 SS G_CDS: -0.32 Total: 121.59 kcal Total: -81.55 -0.28 -81.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364816211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.691 kcal (2) G-P(sol) polarization free energy of solvation -81.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds