Wall clock time and date at job start Tue Mar 31 2020 13:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47076 * 270.00233 * 3 2 1 5 5 H 1.48494 * 109.46903 * 30.00435 * 3 2 1 6 6 H 1.48501 * 109.46941 * 150.00255 * 3 2 1 7 7 C 1.37877 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00340 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99961 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.52104 * 60.07812 * 9 7 2 11 11 C 1.53036 * 109.49834 * 180.16063 * 9 7 2 12 12 C 1.53041 * 109.53823 * 181.31664 * 11 9 7 13 13 C 1.53189 * 109.31455 * 298.63786 * 12 11 9 14 14 N 1.46926 * 108.77894 * 54.63240 * 13 12 11 15 15 C 1.34774 * 120.63326 * 126.36494 * 14 13 12 16 16 O 1.21581 * 120.00372 * 174.98763 * 15 14 13 17 17 N 1.34783 * 119.99820 * 354.99405 * 15 14 13 18 18 C 1.38888 * 119.99672 * 185.14705 * 17 15 14 19 19 N 1.29517 * 125.26739 * 180.02562 * 18 17 15 20 20 C 1.33675 * 115.65786 * 180.02562 * 19 18 17 21 21 C 1.47197 * 122.49882 * 179.97438 * 20 19 18 22 22 N 1.34778 * 120.00126 * 0.02562 * 21 20 19 23 23 O 1.21648 * 119.99769 * 180.02562 * 21 20 19 24 24 C 1.34868 * 114.99807 * 359.97438 * 20 19 18 25 25 S 1.70983 * 109.20188 * 359.72875 * 24 20 19 26 26 C 1.46925 * 118.73761 * 306.39565 * 14 13 12 27 27 H 0.96997 * 119.99979 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46160 * 61.29985 * 11 9 7 29 29 H 1.08998 * 109.45328 * 301.33139 * 11 9 7 30 30 H 1.08996 * 109.50308 * 178.68360 * 12 11 9 31 31 H 1.09008 * 109.49439 * 58.58910 * 12 11 9 32 32 H 1.08996 * 109.58702 * 294.84702 * 13 12 11 33 33 H 1.08998 * 109.70693 * 174.49189 * 13 12 11 34 34 H 0.96992 * 119.99763 * 5.14834 * 17 15 14 35 35 H 0.96995 * 119.99767 * 359.97438 * 22 21 20 36 36 H 0.96995 * 119.99890 * 180.02562 * 22 21 20 37 37 H 1.08000 * 125.39954 * 180.02562 * 24 20 19 38 38 H 1.08994 * 109.58838 * 173.39048 * 26 14 13 39 39 H 1.08998 * 109.58639 * 293.81976 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8761 -0.6819 0.8893 11 6 4.0222 -2.6367 -0.0057 12 6 5.5523 -2.6381 0.0269 13 6 6.0863 -1.9321 -1.2234 14 7 5.4856 -0.5937 -1.3037 15 6 6.2621 0.5015 -1.4222 16 8 5.7524 1.5941 -1.5793 17 7 7.6038 0.3856 -1.3666 18 6 8.4003 1.5233 -1.3811 19 7 9.6945 1.5307 -1.3326 20 6 10.2677 2.7381 -1.3577 21 6 11.7274 2.9217 -1.3093 22 7 12.5396 1.8486 -1.2372 23 8 12.2006 4.0421 -1.3344 24 6 9.4088 3.7754 -1.4307 25 16 7.8076 3.1775 -1.4761 26 6 4.0224 -0.4718 -1.2518 27 1 -0.4850 0.8400 -0.0004 28 1 3.6778 -3.1411 -0.9085 29 1 3.6399 -3.1599 0.8708 30 1 5.9149 -3.6657 0.0472 31 1 5.8977 -2.1123 0.9171 32 1 5.8182 -2.5067 -2.1100 33 1 7.1707 -1.8427 -1.1601 34 1 8.0130 -0.4924 -1.3165 35 1 12.1622 0.9553 -1.2169 36 1 13.5014 1.9697 -1.2049 37 1 9.6883 4.8181 -1.4610 38 1 3.7448 0.5812 -1.2045 39 1 3.5860 -0.9273 -2.1406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365294717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:52 Heat of formation + Delta-G solvation = -8.400508 kcal Electronic energy + Delta-G solvation = -25083.480185 eV Core-core repulsion = 21346.382184 eV Total energy + Delta-G solvation = -3737.098001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93367 -40.27452 -38.55057 -37.52845 -35.09634 -33.82633 -33.50168 -32.20454 -30.74841 -29.91932 -26.05064 -25.45773 -25.03694 -22.59460 -22.30121 -21.25443 -20.15023 -19.29777 -18.46175 -17.99196 -17.62316 -17.11895 -16.75606 -16.04388 -15.94053 -15.59837 -15.19662 -14.49653 -14.33020 -14.22104 -14.13547 -14.02125 -13.42016 -13.20469 -13.04948 -12.77770 -12.38546 -12.02179 -11.53567 -11.24366 -11.15804 -10.79032 -10.62809 -10.53040 -10.27008 -10.18916 -10.07276 -9.94362 -9.88081 -9.51261 -9.42308 -9.25616 -8.77431 -8.58400 -8.17687 -6.20235 -4.22856 0.49301 0.90584 1.66896 1.71063 2.14332 2.93762 3.27654 3.29156 3.35416 3.39489 3.45461 3.59040 4.22069 4.32062 4.79242 5.05222 5.07657 5.10362 5.16502 5.22776 5.46218 5.55835 5.75503 5.85980 5.92727 6.00105 6.16243 6.23761 6.36020 6.46527 6.50233 6.56973 6.68798 6.97858 7.02532 7.26915 7.33249 7.58618 7.66672 8.01283 8.20519 8.38038 8.82895 9.40234 10.91633 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020761 B = 0.003536 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.371291 B = 7916.096913 C = 9031.969533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.004 3.996 10 H 0.032 0.968 11 C -0.101 4.101 12 C -0.137 4.137 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.699 3.301 16 O -0.559 6.559 17 N -0.637 5.637 18 C 0.284 3.716 19 N -0.497 5.497 20 C 0.018 3.982 21 C 0.603 3.397 22 N -0.839 5.839 23 O -0.542 6.542 24 C -0.272 4.272 25 S 0.296 5.704 26 C 0.116 3.884 27 H 0.266 0.734 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.418 0.582 35 H 0.410 0.590 36 H 0.403 0.597 37 H 0.187 0.813 38 H 0.082 0.918 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.114 -1.837 -3.275 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.097 0.903 9 C -0.015 4.015 10 H 0.050 0.950 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.014 4.014 14 N -0.340 5.340 15 C 0.399 3.601 16 O -0.436 6.436 17 N -0.292 5.292 18 C -0.087 4.087 19 N -0.221 5.221 20 C -0.117 4.117 21 C 0.386 3.614 22 N -0.402 5.402 23 O -0.420 6.420 24 C -0.417 4.417 25 S 0.548 5.452 26 C -0.004 4.004 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.260 0.740 35 H 0.240 0.760 36 H 0.234 0.766 37 H 0.204 0.796 38 H 0.100 0.900 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.862 -0.310 -3.440 19.175 hybrid contribution 1.830 0.039 0.070 1.831 sum 20.691 -0.271 -3.370 20.966 Atomic orbital electron populations 1.69876 1.06297 1.27306 1.49458 1.25060 0.94778 0.99117 0.94003 0.87026 0.79712 0.83564 0.79103 1.19601 1.22077 1.18916 1.20920 0.87951 0.94725 1.52024 0.90306 1.19527 0.97008 0.92228 0.92773 0.95006 1.21447 0.91691 0.98837 1.01900 1.22001 0.98882 0.99714 0.96909 1.21746 0.96147 0.83427 1.00053 1.47758 1.08348 1.04040 1.73815 1.15855 0.79617 0.85750 0.78833 1.90862 1.71121 1.25113 1.56529 1.42061 1.04937 1.07083 1.75143 1.23970 0.89895 0.92947 1.01849 1.66968 1.06382 1.25966 1.22810 1.19599 0.95150 0.86951 1.10033 1.17145 0.84616 0.84464 0.75196 1.43615 1.10097 1.09760 1.76743 1.90852 1.76154 1.24059 1.50892 1.27000 1.00705 1.05727 1.08228 1.85414 0.99657 0.95089 1.65059 1.22792 0.73009 1.02976 1.01639 0.92355 0.92252 0.91902 0.91188 0.91802 0.90497 0.91565 0.74000 0.75997 0.76630 0.79592 0.89981 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.88 21.81 24.32 -169.99 -4.13 17.67 16 4 H -0.27 -6.72 6.92 56.52 0.39 -6.32 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 7 C -0.52 -13.47 9.15 -34.44 -0.31 -13.78 16 8 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 9 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 10 H 0.03 0.72 7.21 -51.93 -0.37 0.35 16 11 C -0.10 -1.67 5.11 -26.69 -0.14 -1.81 16 12 C -0.14 -1.68 6.08 -26.61 -0.16 -1.84 16 13 C 0.11 1.24 6.43 -3.71 -0.02 1.22 16 14 N -0.60 -9.70 2.97 -178.50 -0.53 -10.23 16 15 C 0.70 11.47 8.26 -86.91 -0.72 10.75 16 16 O -0.56 -11.00 13.30 5.29 0.07 -10.93 16 17 N -0.64 -8.16 5.31 -16.30 -0.09 -8.25 16 18 C 0.28 3.85 8.36 -87.55 -0.73 3.11 16 19 N -0.50 -6.23 10.12 -10.51 -0.11 -6.33 16 20 C 0.02 0.23 6.66 -84.62 -0.56 -0.34 16 21 C 0.60 7.50 8.06 -12.62 -0.10 7.40 16 22 N -0.84 -7.00 8.87 30.38 0.27 -6.73 16 23 O -0.54 -8.30 17.49 5.23 0.09 -8.21 16 24 C -0.27 -3.41 10.55 29.54 0.31 -3.10 16 25 S 0.30 4.03 20.30 -107.50 -2.18 1.85 16 26 C 0.12 2.33 5.09 -3.71 -0.02 2.31 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.54 5.56 -51.93 -0.29 0.25 16 34 H 0.42 4.05 6.28 -40.82 -0.26 3.79 16 35 H 0.41 2.86 8.31 -40.82 -0.34 2.52 16 36 H 0.40 2.52 8.93 -40.82 -0.36 2.15 16 37 H 0.19 2.06 7.99 -52.49 -0.42 1.64 16 38 H 0.08 1.88 2.35 -51.93 -0.12 1.76 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -32.90 329.99 -7.88 -40.79 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.30 Total: 5.10 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.72 Total: 5.78 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.32 Total: -57.03 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.16 Total: -19.14 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.13 Total: 17.67 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -2.18 Total: 1.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.90 -7.88 -40.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365294717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.386 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds