Wall clock time and date at job start Tue Mar 31 2020 13:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47076 * 270.00233 * 3 2 1 5 5 H 1.48494 * 109.46903 * 30.00435 * 3 2 1 6 6 H 1.48501 * 109.46941 * 150.00255 * 3 2 1 7 7 C 1.37877 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00340 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99961 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.52104 * 60.07812 * 9 7 2 11 11 C 1.53036 * 109.49834 * 180.16063 * 9 7 2 12 12 C 1.53041 * 109.53823 * 181.31664 * 11 9 7 13 13 C 1.53189 * 109.31455 * 298.63786 * 12 11 9 14 14 N 1.46926 * 108.77894 * 54.63240 * 13 12 11 15 15 C 1.34774 * 120.63326 * 126.36494 * 14 13 12 16 16 O 1.21581 * 120.00372 * 174.98763 * 15 14 13 17 17 N 1.34783 * 119.99820 * 354.99405 * 15 14 13 18 18 C 1.38888 * 119.99672 * 185.14705 * 17 15 14 19 19 N 1.29517 * 125.26739 * 180.02562 * 18 17 15 20 20 C 1.33675 * 115.65786 * 180.02562 * 19 18 17 21 21 C 1.47197 * 122.49882 * 179.97438 * 20 19 18 22 22 N 1.34778 * 120.00126 * 0.02562 * 21 20 19 23 23 O 1.21648 * 119.99769 * 180.02562 * 21 20 19 24 24 C 1.34868 * 114.99807 * 359.97438 * 20 19 18 25 25 S 1.70983 * 109.20188 * 359.72875 * 24 20 19 26 26 C 1.46925 * 118.73761 * 306.39565 * 14 13 12 27 27 H 0.96997 * 119.99979 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46160 * 61.29985 * 11 9 7 29 29 H 1.08998 * 109.45328 * 301.33139 * 11 9 7 30 30 H 1.08996 * 109.50308 * 178.68360 * 12 11 9 31 31 H 1.09008 * 109.49439 * 58.58910 * 12 11 9 32 32 H 1.08996 * 109.58702 * 294.84702 * 13 12 11 33 33 H 1.08998 * 109.70693 * 174.49189 * 13 12 11 34 34 H 0.96992 * 119.99763 * 5.14834 * 17 15 14 35 35 H 0.96995 * 119.99767 * 359.97438 * 22 21 20 36 36 H 0.96995 * 119.99890 * 180.02562 * 22 21 20 37 37 H 1.08000 * 125.39954 * 180.02562 * 24 20 19 38 38 H 1.08994 * 109.58838 * 173.39048 * 26 14 13 39 39 H 1.08998 * 109.58639 * 293.81976 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8761 -0.6819 0.8893 11 6 4.0222 -2.6367 -0.0057 12 6 5.5523 -2.6381 0.0269 13 6 6.0863 -1.9321 -1.2234 14 7 5.4856 -0.5937 -1.3037 15 6 6.2621 0.5015 -1.4222 16 8 5.7524 1.5941 -1.5793 17 7 7.6038 0.3856 -1.3666 18 6 8.4003 1.5233 -1.3811 19 7 9.6945 1.5307 -1.3326 20 6 10.2677 2.7381 -1.3577 21 6 11.7274 2.9217 -1.3093 22 7 12.5396 1.8486 -1.2372 23 8 12.2006 4.0421 -1.3344 24 6 9.4088 3.7754 -1.4307 25 16 7.8076 3.1775 -1.4761 26 6 4.0224 -0.4718 -1.2518 27 1 -0.4850 0.8400 -0.0004 28 1 3.6778 -3.1411 -0.9085 29 1 3.6399 -3.1599 0.8708 30 1 5.9149 -3.6657 0.0472 31 1 5.8977 -2.1123 0.9171 32 1 5.8182 -2.5067 -2.1100 33 1 7.1707 -1.8427 -1.1601 34 1 8.0130 -0.4924 -1.3165 35 1 12.1622 0.9553 -1.2169 36 1 13.5014 1.9697 -1.2049 37 1 9.6883 4.8181 -1.4610 38 1 3.7448 0.5812 -1.2045 39 1 3.5860 -0.9273 -2.1406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365294717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:51 Heat of formation + Delta-G solvation = -34.591568 kcal Electronic energy + Delta-G solvation = -25084.615915 eV Core-core repulsion = 21346.382184 eV Total energy + Delta-G solvation = -3738.233731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.11343 -41.30792 -39.59619 -38.82346 -36.30205 -35.22928 -34.66260 -33.69709 -32.25148 -30.98901 -27.29284 -26.94975 -26.30161 -23.69708 -23.64408 -22.44983 -21.32798 -20.54294 -19.56752 -19.12026 -18.86793 -18.49067 -18.05710 -17.21130 -17.03766 -16.89664 -16.27047 -16.09643 -15.57585 -15.43127 -15.31725 -15.13636 -14.90066 -14.63016 -14.32262 -14.06186 -13.81621 -13.16733 -13.08082 -12.91190 -12.33634 -12.28073 -12.11152 -11.89089 -11.65268 -11.56909 -11.37739 -11.15187 -11.07198 -11.01615 -10.78814 -10.77052 -10.54900 -9.89963 -9.29933 -8.36137 -6.38954 -0.52650 -0.11221 0.63787 0.68903 0.98540 1.28201 1.35726 1.41897 1.75609 2.23704 2.27188 2.39018 2.61042 3.01182 3.30189 3.88833 3.99649 4.10708 4.13877 4.22465 4.42464 4.46539 4.51670 4.60302 4.68440 4.82650 4.88507 4.95298 5.03726 5.20941 5.32528 5.41300 5.55670 5.65516 5.69802 5.77487 6.07665 6.28210 6.38794 6.57840 6.71334 6.99386 7.20326 7.26989 8.79814 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020761 B = 0.003536 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.371291 B = 7916.096913 C = 9031.969533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.262 1.262 7 C -0.511 4.511 8 H 0.050 0.950 9 C 0.003 3.997 10 H 0.017 0.983 11 C -0.100 4.100 12 C -0.127 4.127 13 C 0.103 3.897 14 N -0.606 5.606 15 C 0.698 3.302 16 O -0.596 6.596 17 N -0.617 5.617 18 C 0.274 3.726 19 N -0.478 5.478 20 C 0.005 3.995 21 C 0.601 3.399 22 N -0.816 5.816 23 O -0.577 6.577 24 C -0.262 4.262 25 S 0.271 5.729 26 C 0.126 3.874 27 H 0.266 0.734 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.435 0.565 35 H 0.420 0.580 36 H 0.416 0.584 37 H 0.198 0.802 38 H 0.053 0.947 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.566 -3.236 -3.587 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.173 4.173 3 Si 0.763 3.237 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.186 1.186 7 C -0.549 4.549 8 H 0.068 0.932 9 C -0.016 4.016 10 H 0.035 0.965 11 C -0.137 4.137 12 C -0.165 4.165 13 C -0.018 4.018 14 N -0.340 5.340 15 C 0.398 3.602 16 O -0.476 6.476 17 N -0.274 5.274 18 C -0.097 4.097 19 N -0.202 5.202 20 C -0.129 4.129 21 C 0.383 3.617 22 N -0.379 5.379 23 O -0.457 6.457 24 C -0.406 4.406 25 S 0.523 5.477 26 C 0.004 3.996 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.280 0.720 35 H 0.251 0.749 36 H 0.249 0.751 37 H 0.215 0.785 38 H 0.071 0.929 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.403 -1.796 -3.746 22.785 hybrid contribution 0.813 0.378 0.172 0.913 sum 23.216 -1.418 -3.573 23.532 Atomic orbital electron populations 1.69991 1.07735 1.27906 1.52278 1.25681 0.95183 1.01895 0.94495 0.86110 0.78452 0.80455 0.78672 1.19945 1.22629 1.18641 1.21301 0.90879 0.93149 1.49592 0.93183 1.19456 0.93761 0.95659 0.92761 0.96468 1.21387 0.95314 0.95200 1.01822 1.21949 0.95013 1.02331 0.97243 1.22149 0.98262 0.80949 1.00491 1.47582 1.06735 1.05920 1.73804 1.15890 0.80561 0.85137 0.78586 1.90850 1.72198 1.26630 1.57894 1.41650 1.03532 1.07723 1.74496 1.24020 0.90136 0.92843 1.02745 1.66958 1.05690 1.25619 1.21942 1.19827 0.95697 0.87092 1.10321 1.17127 0.84588 0.84716 0.75235 1.43449 1.10571 1.09264 1.74630 1.90842 1.76514 1.25442 1.52885 1.27094 0.99904 1.06361 1.07259 1.85590 1.00604 0.96103 1.65383 1.22204 0.75989 1.00749 1.00707 0.92424 0.91878 0.92639 0.87113 0.92155 0.88455 0.87452 0.72011 0.74852 0.75143 0.78536 0.92869 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 2 C 0.03 1.48 5.45 84.66 0.46 1.94 16 3 Si 0.93 46.69 24.32 68.60 1.67 48.36 16 4 H -0.27 -13.64 6.92 99.48 0.69 -12.95 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 6 H -0.26 -12.76 6.53 99.48 0.65 -12.11 16 7 C -0.51 -27.15 9.15 25.60 0.23 -26.92 16 8 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 9 C 0.00 0.14 1.84 -11.46 -0.02 0.12 16 10 H 0.02 0.77 7.21 -2.39 -0.02 0.76 16 11 C -0.10 -3.10 5.11 30.62 0.16 -2.94 16 12 C -0.13 -2.58 6.08 30.67 0.19 -2.40 16 13 C 0.10 1.86 6.43 86.36 0.56 2.41 16 14 N -0.61 -17.86 2.97 -836.93 -2.49 -20.35 16 15 C 0.70 21.36 8.26 179.05 1.48 22.84 16 16 O -0.60 -22.91 13.30 -3.97 -0.05 -22.96 16 17 N -0.62 -13.85 5.31 -323.76 -1.72 -15.57 16 18 C 0.27 6.74 8.36 179.27 1.50 8.23 16 19 N -0.48 -10.61 10.12 -187.16 -1.89 -12.51 16 20 C 0.01 0.13 6.66 40.44 0.27 0.40 16 21 C 0.60 13.64 8.06 86.60 0.70 14.33 16 22 N -0.82 -11.23 8.87 -176.02 -1.56 -12.79 16 23 O -0.58 -16.81 17.49 -4.18 -0.07 -16.88 16 24 C -0.26 -6.18 10.55 67.05 0.71 -5.47 16 25 S 0.27 7.10 20.30 -56.49 -1.15 5.96 16 26 C 0.13 4.93 5.09 86.36 0.44 5.37 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.09 5.56 -2.39 -0.01 1.08 16 34 H 0.43 6.41 6.28 -92.71 -0.58 5.82 16 35 H 0.42 4.38 8.31 -92.71 -0.77 3.61 16 36 H 0.42 3.98 8.93 -92.71 -0.83 3.15 16 37 H 0.20 4.13 7.99 -2.91 -0.02 4.10 16 38 H 0.05 2.42 2.35 -2.39 -0.01 2.42 16 39 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -74.52 329.99 -1.41 -75.92 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -1.10 Total: 9.80 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 6.66 Total: 17.91 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -7.36 Total: -118.10 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.13 Total: -39.84 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.67 Total: 48.36 kcal Atomic # 16 Polarization: 7.10 SS G_CDS: -1.15 Total: 5.96 kcal Total: -74.52 -1.41 -75.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365294717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.332 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds