Wall clock time and date at job start Tue Mar 31 2020 13:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99709 * 2 1 4 4 H 1.48502 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47316 * 300.00299 * 3 2 1 6 6 H 1.48501 * 109.47139 * 60.00579 * 3 2 1 7 7 C 1.37877 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00044 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99778 * 359.71793 * 7 2 1 10 10 H 1.08994 * 109.50290 * 300.27980 * 9 7 2 11 11 C 1.53043 * 109.49445 * 180.21194 * 9 7 2 12 12 C 1.53043 * 109.53621 * 178.68553 * 11 9 7 13 13 C 1.53192 * 109.31314 * 61.36298 * 12 11 9 14 14 N 1.46927 * 108.77899 * 305.36743 * 13 12 11 15 15 C 1.34773 * 120.62812 * 233.60854 * 14 13 12 16 16 O 1.21581 * 119.99563 * 174.77268 * 15 14 13 17 17 N 1.34776 * 120.00538 * 354.77050 * 15 14 13 18 18 C 1.38889 * 120.00460 * 185.06951 * 17 15 14 19 19 N 1.29514 * 125.26885 * 179.72378 * 18 17 15 20 20 C 1.33676 * 115.65273 * 179.78519 * 19 18 17 21 21 C 1.47198 * 122.50015 * 180.23412 * 20 19 18 22 22 N 1.34774 * 119.99793 * 0.28767 * 21 20 19 23 23 O 1.21639 * 120.00050 * 180.28947 * 21 20 19 24 24 C 1.34863 * 115.00114 * 0.49944 * 20 19 18 25 25 S 1.70984 * 109.20232 * 359.73674 * 24 20 19 26 26 C 1.46925 * 118.76330 * 53.58487 * 14 13 12 27 27 H 0.96996 * 120.00191 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46094 * 298.70272 * 11 9 7 29 29 H 1.08996 * 109.46208 * 58.67848 * 11 9 7 30 30 H 1.08997 * 109.50118 * 181.31439 * 12 11 9 31 31 H 1.09000 * 109.49576 * 301.41374 * 12 11 9 32 32 H 1.09004 * 109.58694 * 65.15862 * 13 12 11 33 33 H 1.09005 * 109.58752 * 185.57626 * 13 12 11 34 34 H 0.97002 * 119.99795 * 5.06885 * 17 15 14 35 35 H 0.96999 * 120.00045 * 359.97438 * 22 21 20 36 36 H 0.96995 * 120.00241 * 180.02562 * 22 21 20 37 37 H 1.07996 * 125.40325 * 179.69196 * 24 20 19 38 38 H 1.09003 * 109.61859 * 186.64069 * 26 14 13 39 39 H 1.09006 * 109.56417 * 66.21807 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 0.0053 10 1 0.6244 -2.5534 0.8953 11 6 2.2452 -3.6627 0.0088 12 6 1.4813 -4.9883 0.0478 13 6 0.6047 -5.1049 -1.2031 14 7 -0.2540 -3.9159 -1.2914 15 6 -1.5905 -4.0416 -1.4116 16 8 -2.2985 -3.0535 -1.3881 17 7 -2.1422 -5.2626 -1.5578 18 6 -3.5065 -5.3853 -1.7870 19 7 -4.1403 -6.5033 -1.9472 20 6 -5.4570 -6.3979 -2.1525 21 6 -6.3235 -7.5716 -2.3477 22 7 -5.7957 -8.8114 -2.3173 23 8 -7.5159 -7.4227 -2.5364 24 6 -5.9314 -5.1356 -2.1730 25 16 -4.6403 -4.0453 -1.9121 26 6 0.3713 -2.5872 -1.2457 27 1 -0.4850 0.8400 0.0004 28 1 2.8554 -3.6217 -0.8935 29 1 2.8882 -3.5884 0.8857 30 1 2.1900 -5.8160 0.0738 31 1 0.8520 -5.0194 0.9372 32 1 1.2376 -5.1651 -2.0886 33 1 -0.0150 -5.9989 -1.1330 34 1 -1.5864 -6.0556 -1.5030 35 1 -4.8448 -8.9301 -2.1672 36 1 -6.3666 -9.5848 -2.4463 37 1 -6.9630 -4.8574 -2.3301 38 1 -0.4019 -1.8201 -1.2034 39 1 0.9849 -2.4418 -2.1349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365294718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:55 Heat of formation + Delta-G solvation = -16.669794 kcal Electronic energy + Delta-G solvation = -24861.497932 eV Core-core repulsion = 21124.041348 eV Total energy + Delta-G solvation = -3737.456585 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67025 -40.08708 -38.39411 -37.22446 -34.82355 -33.73323 -33.42931 -32.03287 -30.10081 -29.65119 -25.88274 -25.22589 -24.86786 -22.48745 -22.01498 -21.09496 -20.07872 -19.15932 -18.22397 -17.72042 -17.51551 -16.88917 -16.32440 -15.81245 -15.80614 -15.16646 -14.95388 -14.57383 -14.22115 -14.04352 -13.93958 -13.69254 -13.26284 -12.99260 -12.76334 -12.44735 -12.13190 -11.82246 -11.13665 -11.04468 -10.97852 -10.65028 -10.53427 -10.42180 -10.37176 -10.06573 -9.97013 -9.85748 -9.84034 -9.34761 -9.26195 -9.11121 -8.57989 -8.36334 -7.90471 -6.09565 -4.18542 0.64583 1.07786 1.83865 1.85596 2.39062 3.17438 3.24749 3.33781 3.36018 3.44919 3.50055 3.86073 4.35033 4.37770 4.98294 5.18320 5.20791 5.26194 5.31473 5.41264 5.61566 5.77095 5.95914 6.13393 6.15122 6.24972 6.47355 6.53589 6.59005 6.74621 6.81737 6.98108 7.01781 7.14908 7.44473 7.58467 7.73880 7.87561 8.04096 8.11050 8.25886 8.55842 8.85679 9.47940 10.95696 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.003045 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.028554 B = 9193.185906 C =10292.153464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.039 3.961 10 H 0.031 0.969 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.109 3.891 14 N -0.603 5.603 15 C 0.696 3.304 16 O -0.547 6.547 17 N -0.640 5.640 18 C 0.286 3.714 19 N -0.501 5.501 20 C 0.017 3.983 21 C 0.603 3.397 22 N -0.840 5.840 23 O -0.544 6.544 24 C -0.278 4.278 25 S 0.302 5.698 26 C 0.125 3.875 27 H 0.264 0.736 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.416 0.584 35 H 0.410 0.590 36 H 0.402 0.598 37 H 0.185 0.815 38 H 0.127 0.873 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 -14.926 -4.181 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.049 0.951 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.338 5.338 15 C 0.396 3.604 16 O -0.423 6.423 17 N -0.295 5.295 18 C -0.085 4.085 19 N -0.226 5.226 20 C -0.119 4.119 21 C 0.386 3.614 22 N -0.403 5.403 23 O -0.421 6.421 24 C -0.422 4.422 25 S 0.555 5.445 26 C 0.005 3.995 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.257 0.743 35 H 0.240 0.760 36 H 0.233 0.767 37 H 0.202 0.798 38 H 0.145 0.855 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.197 -13.131 -4.184 14.729 hybrid contribution 0.556 -0.892 -0.015 1.052 sum -4.641 -14.023 -4.199 15.356 Atomic orbital electron populations 1.69872 1.05707 1.26922 1.49103 1.25057 0.94913 0.99334 0.94694 0.86530 0.80042 0.83701 0.77707 1.19793 1.20921 1.20972 1.21083 0.92986 0.89918 1.52027 0.92194 1.19001 0.92611 0.92466 0.93925 0.95094 1.21637 0.98591 0.93793 1.00890 1.21954 0.98663 0.99528 0.97056 1.21678 0.93535 0.86716 0.99551 1.47877 1.02284 1.10101 1.73515 1.15907 0.83792 0.81657 0.79039 1.90888 1.59170 1.35171 1.57077 1.42203 1.03704 1.10262 1.73368 1.24004 0.90078 0.93312 1.01084 1.66976 1.06404 1.26731 1.22533 1.19566 0.88703 0.93868 1.09720 1.17171 0.86187 0.82618 0.75413 1.43620 1.14116 1.07314 1.75230 1.90841 1.14969 1.86169 1.50142 1.27020 1.08418 0.98266 1.08503 1.85466 0.91942 1.04227 1.62883 1.22460 0.98614 0.79393 0.99018 0.92567 0.92973 0.92735 0.91823 0.91951 0.91123 0.91989 0.74327 0.76005 0.76732 0.79770 0.85501 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.16 11.40 55.43 0.63 -23.53 16 2 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.21 8.56 -34.44 -0.29 -13.51 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.89 2.25 -91.65 -0.21 0.68 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -1.98 5.11 -26.69 -0.14 -2.12 16 12 C -0.13 -1.85 6.08 -26.61 -0.16 -2.01 16 13 C 0.11 1.41 6.39 -3.71 -0.02 1.38 16 14 N -0.60 -10.52 2.97 -178.49 -0.53 -11.05 16 15 C 0.70 12.33 8.26 -86.92 -0.72 11.61 16 16 O -0.55 -11.57 13.28 5.29 0.07 -11.50 16 17 N -0.64 -8.93 5.31 -16.31 -0.09 -9.02 16 18 C 0.29 4.14 8.36 -87.55 -0.73 3.41 16 19 N -0.50 -6.73 10.12 -10.51 -0.11 -6.84 16 20 C 0.02 0.23 6.66 -84.62 -0.56 -0.34 16 21 C 0.60 7.90 8.06 -12.62 -0.10 7.80 16 22 N -0.84 -7.53 8.87 30.38 0.27 -7.26 16 23 O -0.54 -8.65 17.49 5.24 0.09 -8.56 16 24 C -0.28 -3.69 10.55 29.53 0.31 -3.38 16 25 S 0.30 4.36 20.30 -107.50 -2.18 2.18 16 26 C 0.12 2.71 5.41 -3.71 -0.02 2.69 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.60 5.65 -51.93 -0.29 0.31 16 34 H 0.42 4.57 6.31 -40.82 -0.26 4.31 16 35 H 0.41 3.13 8.31 -40.82 -0.34 2.80 16 36 H 0.40 2.73 8.93 -40.82 -0.36 2.37 16 37 H 0.19 2.18 7.99 -52.49 -0.42 1.76 16 38 H 0.13 3.26 5.13 -51.93 -0.27 3.00 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -30.81 336.93 -8.97 -39.78 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.44 Total: 7.66 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -2.74 Total: 7.79 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.18 Total: -57.70 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.16 Total: -20.06 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -2.18 Total: 2.18 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.81 -8.97 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365294718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.109 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds