Wall clock time and date at job start Tue Mar 31 2020 13:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99709 * 2 1 4 4 H 1.48502 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47316 * 300.00299 * 3 2 1 6 6 H 1.48501 * 109.47139 * 60.00579 * 3 2 1 7 7 C 1.37877 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00044 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99778 * 359.71793 * 7 2 1 10 10 H 1.08994 * 109.50290 * 300.27980 * 9 7 2 11 11 C 1.53043 * 109.49445 * 180.21194 * 9 7 2 12 12 C 1.53043 * 109.53621 * 178.68553 * 11 9 7 13 13 C 1.53192 * 109.31314 * 61.36298 * 12 11 9 14 14 N 1.46927 * 108.77899 * 305.36743 * 13 12 11 15 15 C 1.34773 * 120.62812 * 233.60854 * 14 13 12 16 16 O 1.21581 * 119.99563 * 174.77268 * 15 14 13 17 17 N 1.34776 * 120.00538 * 354.77050 * 15 14 13 18 18 C 1.38889 * 120.00460 * 185.06951 * 17 15 14 19 19 N 1.29514 * 125.26885 * 179.72378 * 18 17 15 20 20 C 1.33676 * 115.65273 * 179.78519 * 19 18 17 21 21 C 1.47198 * 122.50015 * 180.23412 * 20 19 18 22 22 N 1.34774 * 119.99793 * 0.28767 * 21 20 19 23 23 O 1.21639 * 120.00050 * 180.28947 * 21 20 19 24 24 C 1.34863 * 115.00114 * 0.49944 * 20 19 18 25 25 S 1.70984 * 109.20232 * 359.73674 * 24 20 19 26 26 C 1.46925 * 118.76330 * 53.58487 * 14 13 12 27 27 H 0.96996 * 120.00191 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46094 * 298.70272 * 11 9 7 29 29 H 1.08996 * 109.46208 * 58.67848 * 11 9 7 30 30 H 1.08997 * 109.50118 * 181.31439 * 12 11 9 31 31 H 1.09000 * 109.49576 * 301.41374 * 12 11 9 32 32 H 1.09004 * 109.58694 * 65.15862 * 13 12 11 33 33 H 1.09005 * 109.58752 * 185.57626 * 13 12 11 34 34 H 0.97002 * 119.99795 * 5.06885 * 17 15 14 35 35 H 0.96999 * 120.00045 * 359.97438 * 22 21 20 36 36 H 0.96995 * 120.00241 * 180.02562 * 22 21 20 37 37 H 1.07996 * 125.40325 * 179.69196 * 24 20 19 38 38 H 1.09003 * 109.61859 * 186.64069 * 26 14 13 39 39 H 1.09006 * 109.56417 * 66.21807 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 0.0053 10 1 0.6244 -2.5534 0.8953 11 6 2.2452 -3.6627 0.0088 12 6 1.4813 -4.9883 0.0478 13 6 0.6047 -5.1049 -1.2031 14 7 -0.2540 -3.9159 -1.2914 15 6 -1.5905 -4.0416 -1.4116 16 8 -2.2985 -3.0535 -1.3881 17 7 -2.1422 -5.2626 -1.5578 18 6 -3.5065 -5.3853 -1.7870 19 7 -4.1403 -6.5033 -1.9472 20 6 -5.4570 -6.3979 -2.1525 21 6 -6.3235 -7.5716 -2.3477 22 7 -5.7957 -8.8114 -2.3173 23 8 -7.5159 -7.4227 -2.5364 24 6 -5.9314 -5.1356 -2.1730 25 16 -4.6403 -4.0453 -1.9121 26 6 0.3713 -2.5872 -1.2457 27 1 -0.4850 0.8400 0.0004 28 1 2.8554 -3.6217 -0.8935 29 1 2.8882 -3.5884 0.8857 30 1 2.1900 -5.8160 0.0738 31 1 0.8520 -5.0194 0.9372 32 1 1.2376 -5.1651 -2.0886 33 1 -0.0150 -5.9989 -1.1330 34 1 -1.5864 -6.0556 -1.5030 35 1 -4.8448 -8.9301 -2.1672 36 1 -6.3666 -9.5848 -2.4463 37 1 -6.9630 -4.8574 -2.3301 38 1 -0.4019 -1.8201 -1.2034 39 1 0.9849 -2.4418 -2.1349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365294718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:54 Heat of formation + Delta-G solvation = -39.430642 kcal Electronic energy + Delta-G solvation = -24862.484917 eV Core-core repulsion = 21124.041348 eV Total energy + Delta-G solvation = -3738.443569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.94086 -41.23081 -39.51530 -38.63302 -36.15758 -35.16607 -34.63279 -33.52288 -31.59105 -30.88163 -27.25960 -26.80842 -26.16536 -23.73991 -23.39246 -22.38750 -21.32114 -20.44907 -19.44105 -18.98590 -18.47211 -18.30463 -17.91335 -17.10551 -16.86276 -16.67136 -16.23084 -16.15087 -15.30440 -15.28870 -15.26080 -14.98239 -14.56311 -14.43344 -14.16938 -13.95537 -13.58443 -12.99321 -12.89796 -12.65891 -12.29854 -12.21057 -12.17689 -11.86207 -11.64194 -11.55539 -11.26457 -11.06355 -10.96248 -10.85717 -10.74668 -10.50159 -10.48294 -9.72573 -9.18716 -8.08329 -6.23969 -0.46419 -0.03752 0.72676 0.74699 1.12073 1.42478 1.45530 1.55512 1.89929 2.32007 2.43301 2.52255 2.69851 3.20842 3.35890 3.97001 4.12510 4.17334 4.25938 4.29860 4.55506 4.61464 4.70879 4.79064 4.81838 4.97712 5.12570 5.16106 5.28453 5.30730 5.49385 5.54913 5.67282 5.80767 5.93990 6.02597 6.16737 6.36188 6.45214 6.72682 6.88605 7.18915 7.23082 7.46163 8.94878 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022832 B = 0.003045 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.028554 B = 9193.185906 C =10292.153464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.037 3.963 10 H -0.011 1.011 11 C -0.107 4.107 12 C -0.126 4.126 13 C 0.103 3.897 14 N -0.606 5.606 15 C 0.694 3.306 16 O -0.589 6.589 17 N -0.620 5.620 18 C 0.274 3.726 19 N -0.481 5.481 20 C 0.004 3.996 21 C 0.602 3.398 22 N -0.816 5.816 23 O -0.577 6.577 24 C -0.266 4.266 25 S 0.277 5.723 26 C 0.141 3.859 27 H 0.260 0.740 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.432 0.568 35 H 0.420 0.580 36 H 0.416 0.584 37 H 0.197 0.803 38 H 0.084 0.916 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -17.565 -4.737 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.018 3.982 10 H 0.007 0.993 11 C -0.145 4.145 12 C -0.164 4.164 13 C -0.019 4.019 14 N -0.340 5.340 15 C 0.394 3.606 16 O -0.467 6.467 17 N -0.277 5.277 18 C -0.097 4.097 19 N -0.206 5.206 20 C -0.131 4.131 21 C 0.384 3.616 22 N -0.379 5.379 23 O -0.457 6.457 24 C -0.410 4.410 25 S 0.529 5.471 26 C 0.019 3.981 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.276 0.724 35 H 0.251 0.749 36 H 0.248 0.752 37 H 0.214 0.786 38 H 0.102 0.898 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.015 -15.881 -4.739 17.052 hybrid contribution 0.189 -0.143 0.174 0.293 sum -3.827 -16.023 -4.565 17.095 Atomic orbital electron populations 1.70051 1.07127 1.27164 1.50546 1.25805 0.95533 1.02554 0.94728 0.85601 0.79329 0.79980 0.77314 1.18669 1.20903 1.21222 1.21512 0.93267 0.91396 1.50955 0.92079 1.18933 0.93125 0.93706 0.92461 0.99276 1.21529 0.97720 0.94066 1.01148 1.21913 0.99040 0.98440 0.97044 1.22059 0.93784 0.85992 1.00063 1.47708 1.02734 1.10103 1.73447 1.15957 0.83687 0.82149 0.78769 1.90874 1.60251 1.37005 1.58585 1.41746 1.03665 1.09498 1.72797 1.24053 0.90192 0.93355 1.02129 1.66968 1.06164 1.25891 1.21574 1.19825 0.88868 0.94427 1.09945 1.17119 0.85596 0.83410 0.75471 1.43443 1.14818 1.06481 1.73185 1.90832 1.16151 1.86653 1.52050 1.27118 1.08568 0.97863 1.07495 1.85672 0.92954 1.05279 1.63205 1.21811 0.97140 0.80842 0.98331 0.93104 0.92070 0.93108 0.87515 0.93062 0.88898 0.88043 0.72394 0.74885 0.75158 0.78578 0.89823 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.29 11.40 21.45 0.24 -52.04 16 2 C 0.01 0.73 5.31 84.65 0.45 1.18 16 3 Si 0.95 42.41 29.54 68.60 2.03 44.44 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.53 -27.50 8.56 25.60 0.22 -27.28 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.04 1.71 2.25 -11.46 -0.03 1.68 16 10 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 11 C -0.11 -3.65 5.11 30.62 0.16 -3.49 16 12 C -0.13 -3.10 6.08 30.67 0.19 -2.91 16 13 C 0.10 2.30 6.39 86.36 0.55 2.85 16 14 N -0.61 -20.68 2.97 -836.89 -2.49 -23.16 16 15 C 0.69 24.41 8.26 179.06 1.48 25.89 16 16 O -0.59 -25.72 13.28 -3.97 -0.05 -25.77 16 17 N -0.62 -16.23 5.31 -323.77 -1.72 -17.95 16 18 C 0.27 7.58 8.36 179.27 1.50 9.08 16 19 N -0.48 -11.93 10.12 -187.17 -1.89 -13.82 16 20 C 0.00 0.11 6.66 40.44 0.27 0.38 16 21 C 0.60 14.67 8.06 86.60 0.70 15.37 16 22 N -0.82 -12.50 8.87 -176.04 -1.56 -14.06 16 23 O -0.58 -17.65 17.49 -4.15 -0.07 -17.72 16 24 C -0.27 -6.87 10.55 67.04 0.71 -6.17 16 25 S 0.28 8.02 20.30 -56.49 -1.15 6.87 16 26 C 0.14 6.25 5.41 86.36 0.47 6.72 16 27 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.10 1.49 5.65 -2.38 -0.01 1.48 16 34 H 0.43 8.05 6.31 -92.71 -0.58 7.46 16 35 H 0.42 5.10 8.31 -92.71 -0.77 4.33 16 36 H 0.42 4.53 8.93 -92.71 -0.83 3.70 16 37 H 0.20 4.51 7.99 -2.91 -0.02 4.49 16 38 H 0.08 4.52 5.13 -2.39 -0.01 4.51 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -70.49 336.93 -1.05 -71.53 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -1.04 Total: 18.38 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 6.66 Total: 23.30 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -7.42 Total: -121.03 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.13 Total: -43.49 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 8.02 SS G_CDS: -1.15 Total: 6.87 kcal Total: -70.49 -1.05 -71.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365294718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.104 kcal (2) G-P(sol) polarization free energy of solvation -70.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds