Wall clock time and date at job start Tue Mar 31 2020 13:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31412 * 125.50406 * 2 1 4 4 N 1.39942 * 108.83099 * 180.13582 * 3 2 1 5 5 C 1.36522 * 132.56336 * 179.97438 * 4 3 2 6 6 C 1.35531 * 119.12035 * 179.71865 * 5 4 3 7 7 C 1.40248 * 119.45096 * 359.96778 * 6 5 4 8 8 N 1.31213 * 120.28398 * 0.02562 * 7 6 5 9 9 C 1.33978 * 120.81178 * 0.02562 * 8 7 6 10 10 C 1.38663 * 125.50169 * 179.74628 * 2 1 3 11 11 S 1.76200 * 126.17674 * 0.03140 * 10 2 1 12 12 O 1.42110 * 106.39962 * 23.49781 * 11 10 2 13 13 O 1.42094 * 106.40284 * 156.41885 * 11 10 2 14 14 N 1.65598 * 107.21690 * 269.96084 * 11 10 2 15 15 C 1.46496 * 120.00293 * 90.00091 * 14 11 10 16 16 C 1.46504 * 119.99674 * 269.99868 * 14 11 10 17 17 H 1.08996 * 109.47029 * 359.97438 * 16 14 11 18 18 C 1.52998 * 109.47044 * 239.99926 * 16 14 11 19 19 C 1.50701 * 109.47346 * 120.00196 * 16 14 11 20 20 H 1.08002 * 119.99422 * 359.97438 * 19 16 14 21 21 C 1.37873 * 120.00358 * 179.97438 * 19 16 14 22 22 N 1.31516 * 119.99747 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 119.99991 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47272 * 60.00140 * 23 21 19 25 25 H 1.48501 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47104 * 299.99570 * 23 21 19 27 27 H 1.09002 * 109.46725 * 270.26282 * 1 2 3 28 28 H 1.08999 * 109.46668 * 30.25040 * 1 2 3 29 29 H 1.08988 * 109.47416 * 150.25766 * 1 2 3 30 30 H 1.08002 * 120.44331 * 359.69196 * 5 4 3 31 31 H 1.07999 * 120.27359 * 179.97438 * 6 5 4 32 32 H 1.08005 * 119.85694 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47509 * 89.99975 * 15 14 11 34 34 H 1.09008 * 109.46988 * 210.00059 * 15 14 11 35 35 H 1.09001 * 109.47008 * 329.99719 * 15 14 11 36 36 H 1.08999 * 109.47144 * 179.97438 * 18 16 14 37 37 H 1.09003 * 109.47201 * 300.00242 * 18 16 14 38 38 H 1.09007 * 109.47203 * 60.00159 * 18 16 14 39 39 H 0.96996 * 119.99726 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2703 1.0698 0.0000 4 7 3.6109 0.6683 -0.0031 5 6 4.7840 1.3666 -0.0049 6 6 5.9563 0.6866 -0.0021 7 6 5.9400 -0.7158 0.0031 8 7 4.7994 -1.3643 0.0049 9 6 3.6341 -0.7032 0.0011 10 6 2.3123 -1.1288 0.0050 11 16 1.7585 -2.8015 0.0116 12 8 0.4457 -2.7916 -0.5326 13 8 2.8185 -3.5774 -0.5300 14 7 1.6047 -3.2606 1.5952 15 6 0.3323 -3.0650 2.2945 16 6 2.7412 -3.8626 2.2970 17 1 3.5932 -3.9270 1.6203 18 6 2.3613 -5.2661 2.7730 19 6 3.1061 -3.0108 3.4854 20 1 2.5476 -2.1109 3.6966 21 6 4.1529 -3.3804 4.3031 22 7 4.8333 -4.4761 4.0456 23 14 4.6056 -2.3242 5.7757 24 1 3.4445 -2.2359 6.6973 25 1 5.7575 -2.9344 6.4871 26 1 4.9753 -0.9624 5.3132 27 1 -0.3633 0.0047 1.0277 28 1 -0.3632 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5098 30 1 4.7779 2.4466 -0.0089 31 1 6.8953 1.2202 -0.0039 32 1 6.8704 -1.2643 0.0058 33 1 -0.2919 -3.9494 2.1674 34 1 0.5220 -2.9035 3.3557 35 1 -0.1798 -2.1963 1.8806 36 1 3.2069 -5.7142 3.2947 37 1 1.5090 -5.2021 3.4495 38 1 2.0973 -5.8823 1.9134 39 1 5.5694 -4.7363 4.6210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413287786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:53 Heat of formation + Delta-G solvation = 51.743972 kcal Electronic energy + Delta-G solvation = -26794.984584 eV Core-core repulsion = 23060.494643 eV Total energy + Delta-G solvation = -3734.489941 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29194 -38.21920 -36.43520 -36.01293 -35.00359 -34.23719 -32.52529 -32.06764 -29.45666 -28.97086 -28.16889 -25.37520 -25.10471 -24.48551 -23.27034 -20.88061 -20.60581 -18.61927 -17.77547 -17.43808 -16.79834 -16.48135 -16.30778 -15.95817 -15.35571 -15.09781 -14.51705 -14.22496 -13.53779 -13.41218 -13.23164 -13.14949 -13.02226 -12.60174 -12.41754 -12.20398 -11.86175 -11.78218 -11.59786 -11.29300 -11.23527 -11.11717 -11.03631 -10.85860 -10.84078 -10.36652 -10.35087 -10.12144 -9.95958 -9.75827 -9.36353 -9.18941 -8.42178 -8.29570 -7.80679 -6.03594 -4.10377 0.44454 0.79980 1.31964 2.03208 2.35501 3.23440 3.29439 3.31282 3.36540 3.84717 3.89693 4.05300 4.27839 4.38047 4.57724 4.71805 4.86060 4.92537 5.18578 5.26329 5.31235 5.57941 5.65366 5.73486 5.79125 5.88586 6.06730 6.27679 6.37699 6.43493 6.57535 6.77791 6.97727 6.99534 7.22816 7.34245 7.60558 7.64095 7.70445 7.90728 8.13834 8.34860 8.91347 9.53955 11.01453 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.007415 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.090775 B = 3775.357451 C = 5052.874528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.206 3.794 3 N -0.323 5.323 4 N -0.306 5.306 5 C 0.161 3.839 6 C -0.225 4.225 7 C 0.195 3.805 8 N -0.436 5.436 9 C 0.375 3.625 10 C -0.804 4.804 11 S 2.720 3.280 12 O -0.982 6.982 13 O -0.950 6.950 14 N -0.981 5.981 15 C 0.104 3.896 16 C 0.268 3.732 17 H 0.066 0.934 18 C -0.143 4.143 19 C -0.520 4.520 20 H 0.057 0.943 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.890 3.110 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.282 1.282 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.180 0.820 31 H 0.171 0.829 32 H 0.187 0.813 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.031 0.969 38 H 0.013 0.987 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 10.724 -6.852 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.044 3.956 3 N -0.147 5.147 4 N -0.073 5.073 5 C 0.024 3.976 6 C -0.249 4.249 7 C 0.012 3.988 8 N -0.146 5.146 9 C 0.142 3.858 10 C -0.901 4.901 11 S 2.807 3.193 12 O -0.972 6.972 13 O -0.940 6.940 14 N -0.821 5.821 15 C -0.042 4.042 16 C 0.165 3.835 17 H 0.084 0.916 18 C -0.203 4.203 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.136 4.136 22 N -0.523 5.523 23 Si 0.718 3.282 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.208 1.208 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.138 0.862 30 H 0.197 0.803 31 H 0.188 0.812 32 H 0.204 0.796 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.744 10.522 -7.506 12.946 hybrid contribution 0.866 1.563 1.437 2.292 sum 0.122 12.084 -6.070 13.523 Atomic orbital electron populations 1.20915 0.84794 1.06354 1.04807 1.21875 0.97045 0.88257 0.88401 1.77783 0.82359 1.21013 1.33514 1.47539 1.06706 1.07705 1.45325 1.22106 0.81624 0.99759 0.94087 1.21961 0.98346 0.96341 1.08246 1.23687 0.96837 0.91501 0.86788 1.68572 0.95877 1.36250 1.13941 1.19976 0.93482 0.79897 0.92459 1.31380 0.96111 1.25526 1.37125 1.01045 0.72814 0.72391 0.73087 1.93421 1.38704 1.87187 1.77897 1.93551 1.56693 1.66870 1.76904 1.57470 1.19874 1.74329 1.30437 1.21229 0.84182 0.99381 0.99408 1.18747 0.82203 0.90180 0.92365 0.91604 1.22051 1.01824 0.97798 0.98649 1.21330 1.15318 1.08719 1.10624 0.92476 1.24859 0.96092 0.95154 0.97516 1.69873 1.20857 1.23075 1.38492 0.86704 0.78086 0.80356 0.83026 1.20225 1.21124 1.20830 0.88985 0.89886 0.86225 0.80271 0.81171 0.79612 0.93612 0.90375 0.93161 0.88953 0.94965 0.96757 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.11 36.01 0.36 -1.17 16 2 C 0.21 3.69 7.15 -82.61 -0.59 3.10 16 3 N -0.32 -5.68 12.66 33.53 0.42 -5.26 16 4 N -0.31 -5.21 3.90 -12.20 -0.05 -5.26 16 5 C 0.16 1.88 11.30 -16.43 -0.19 1.69 16 6 C -0.23 -2.19 10.05 -39.79 -0.40 -2.59 16 7 C 0.19 2.59 11.27 -17.06 -0.19 2.40 16 8 N -0.44 -8.44 10.27 -12.21 -0.13 -8.57 16 9 C 0.37 7.49 7.72 -155.52 -1.20 6.29 16 10 C -0.80 -16.41 6.25 -39.19 -0.24 -16.66 16 11 S 2.72 58.89 5.73 -107.50 -0.62 58.27 16 12 O -0.98 -20.25 14.38 -57.17 -0.82 -21.07 16 13 O -0.95 -23.37 16.23 -57.17 -0.93 -24.30 16 14 N -0.98 -21.67 3.06 -115.85 -0.35 -22.02 16 15 C 0.10 1.93 9.28 59.84 0.56 2.48 16 16 C 0.27 6.81 2.62 -69.08 -0.18 6.63 16 17 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 18 C -0.14 -3.50 8.97 37.16 0.33 -3.17 16 19 C -0.52 -13.85 7.99 -34.44 -0.28 -14.12 16 20 H 0.06 1.51 7.33 -52.49 -0.38 1.13 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.52 11.32 55.43 0.63 -23.90 16 23 Si 0.89 20.85 29.54 -169.99 -5.02 15.82 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.09 1.12 8.02 -51.93 -0.42 0.71 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.12 1.75 5.59 -51.94 -0.29 1.46 16 30 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.19 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.47 7.02 -51.92 -0.36 1.10 16 35 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 36 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 37 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 38 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -35.86 339.61 -8.46 -44.32 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.60 Total: 0.28 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.11 Total: -13.44 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: 0.52 Total: -65.00 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.75 Total: -45.37 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 58.89 SS G_CDS: -0.62 Total: 58.27 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.86 -8.46 -44.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413287786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.061 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds