Wall clock time and date at job start Tue Mar 31 2020 13:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.31412 * 125.50406 * 2 1 4 4 N 1.39942 * 108.83099 * 180.13582 * 3 2 1 5 5 C 1.36522 * 132.56336 * 179.97438 * 4 3 2 6 6 C 1.35531 * 119.12035 * 179.71865 * 5 4 3 7 7 C 1.40248 * 119.45096 * 359.96778 * 6 5 4 8 8 N 1.31213 * 120.28398 * 0.02562 * 7 6 5 9 9 C 1.33978 * 120.81178 * 0.02562 * 8 7 6 10 10 C 1.38663 * 125.50169 * 179.74628 * 2 1 3 11 11 S 1.76200 * 126.17674 * 0.03140 * 10 2 1 12 12 O 1.42110 * 106.39962 * 23.49781 * 11 10 2 13 13 O 1.42094 * 106.40284 * 156.41885 * 11 10 2 14 14 N 1.65598 * 107.21690 * 269.96084 * 11 10 2 15 15 C 1.46496 * 120.00293 * 90.00091 * 14 11 10 16 16 C 1.46504 * 119.99674 * 269.99868 * 14 11 10 17 17 H 1.08996 * 109.47029 * 359.97438 * 16 14 11 18 18 C 1.52998 * 109.47044 * 239.99926 * 16 14 11 19 19 C 1.50701 * 109.47346 * 120.00196 * 16 14 11 20 20 H 1.08002 * 119.99422 * 359.97438 * 19 16 14 21 21 C 1.37873 * 120.00358 * 179.97438 * 19 16 14 22 22 N 1.31516 * 119.99747 * 0.02562 * 21 19 16 23 23 Si 1.86797 * 119.99991 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47272 * 60.00140 * 23 21 19 25 25 H 1.48501 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47104 * 299.99570 * 23 21 19 27 27 H 1.09002 * 109.46725 * 270.26282 * 1 2 3 28 28 H 1.08999 * 109.46668 * 30.25040 * 1 2 3 29 29 H 1.08988 * 109.47416 * 150.25766 * 1 2 3 30 30 H 1.08002 * 120.44331 * 359.69196 * 5 4 3 31 31 H 1.07999 * 120.27359 * 179.97438 * 6 5 4 32 32 H 1.08005 * 119.85694 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47509 * 89.99975 * 15 14 11 34 34 H 1.09008 * 109.46988 * 210.00059 * 15 14 11 35 35 H 1.09001 * 109.47008 * 329.99719 * 15 14 11 36 36 H 1.08999 * 109.47144 * 179.97438 * 18 16 14 37 37 H 1.09003 * 109.47201 * 300.00242 * 18 16 14 38 38 H 1.09007 * 109.47203 * 60.00159 * 18 16 14 39 39 H 0.96996 * 119.99726 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2703 1.0698 0.0000 4 7 3.6109 0.6683 -0.0031 5 6 4.7840 1.3666 -0.0049 6 6 5.9563 0.6866 -0.0021 7 6 5.9400 -0.7158 0.0031 8 7 4.7994 -1.3643 0.0049 9 6 3.6341 -0.7032 0.0011 10 6 2.3123 -1.1288 0.0050 11 16 1.7585 -2.8015 0.0116 12 8 0.4457 -2.7916 -0.5326 13 8 2.8185 -3.5774 -0.5300 14 7 1.6047 -3.2606 1.5952 15 6 0.3323 -3.0650 2.2945 16 6 2.7412 -3.8626 2.2970 17 1 3.5932 -3.9270 1.6203 18 6 2.3613 -5.2661 2.7730 19 6 3.1061 -3.0108 3.4854 20 1 2.5476 -2.1109 3.6966 21 6 4.1529 -3.3804 4.3031 22 7 4.8333 -4.4761 4.0456 23 14 4.6056 -2.3242 5.7757 24 1 3.4445 -2.2359 6.6973 25 1 5.7575 -2.9344 6.4871 26 1 4.9753 -0.9624 5.3132 27 1 -0.3633 0.0047 1.0277 28 1 -0.3632 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5098 30 1 4.7779 2.4466 -0.0089 31 1 6.8953 1.2202 -0.0039 32 1 6.8704 -1.2643 0.0058 33 1 -0.2919 -3.9494 2.1674 34 1 0.5220 -2.9035 3.3557 35 1 -0.1798 -2.1963 1.8806 36 1 3.2069 -5.7142 3.2947 37 1 1.5090 -5.2021 3.4495 38 1 2.0973 -5.8823 1.9134 39 1 5.5694 -4.7363 4.6210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413287786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:53 Heat of formation + Delta-G solvation = 25.386516 kcal Electronic energy + Delta-G solvation = -26796.127529 eV Core-core repulsion = 23060.494643 eV Total energy + Delta-G solvation = -3735.632886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.47957 -39.37893 -38.12811 -37.81841 -36.73105 -35.39746 -34.48751 -33.15253 -30.90623 -30.65770 -29.28067 -27.22808 -26.93243 -25.56466 -24.48857 -22.51966 -22.10546 -19.98736 -19.21395 -18.69076 -18.41982 -18.25075 -17.76324 -17.26718 -16.93730 -16.43969 -16.23775 -15.34870 -15.15696 -14.86240 -14.57145 -14.42309 -14.29913 -14.14646 -13.68267 -13.59131 -13.40140 -13.30578 -13.14418 -13.10255 -12.95079 -12.73456 -12.71378 -12.66293 -12.31367 -12.19723 -12.12040 -11.86569 -11.70696 -11.14664 -10.89659 -10.51301 -10.48197 -9.68887 -9.44849 -8.07289 -6.21164 -0.64848 -0.32029 -0.23145 0.92775 1.07059 1.37800 1.40257 1.47619 2.18037 2.35853 2.46553 2.72125 2.84050 2.99060 3.19375 3.39918 3.47117 3.75633 3.97779 4.12938 4.19841 4.29792 4.49899 4.63839 4.68950 4.78109 4.84950 4.85443 4.97564 5.02476 5.04649 5.19110 5.26557 5.30618 5.47048 5.61826 5.75745 5.93621 6.11521 6.16035 6.32704 6.51638 6.85410 7.46078 8.97285 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.007415 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.090775 B = 3775.357451 C = 5052.874528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.203 3.797 3 N -0.331 5.331 4 N -0.312 5.312 5 C 0.147 3.853 6 C -0.195 4.195 7 C 0.190 3.810 8 N -0.504 5.504 9 C 0.355 3.645 10 C -0.843 4.843 11 S 2.729 3.271 12 O -0.980 6.980 13 O -0.991 6.991 14 N -0.990 5.990 15 C 0.095 3.905 16 C 0.276 3.724 17 H 0.026 0.974 18 C -0.137 4.137 19 C -0.527 4.527 20 H 0.054 0.946 21 C 0.022 3.978 22 N -0.912 5.912 23 Si 0.951 3.049 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.281 1.281 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.227 0.773 31 H 0.233 0.767 32 H 0.218 0.782 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.020 0.980 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 13.660 -6.196 15.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.040 3.960 3 N -0.155 5.155 4 N -0.078 5.078 5 C 0.013 3.987 6 C -0.218 4.218 7 C 0.011 3.989 8 N -0.216 5.216 9 C 0.119 3.881 10 C -0.944 4.944 11 S 2.820 3.180 12 O -0.970 6.970 13 O -0.982 6.982 14 N -0.829 5.829 15 C -0.050 4.050 16 C 0.172 3.828 17 H 0.044 0.956 18 C -0.196 4.196 19 C -0.566 4.566 20 H 0.073 0.927 21 C -0.178 4.178 22 N -0.551 5.551 23 Si 0.777 3.223 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.207 1.207 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.243 0.757 31 H 0.249 0.751 32 H 0.234 0.766 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.042 13.449 -6.851 15.094 hybrid contribution 0.830 0.755 1.155 1.610 sum 0.788 14.204 -5.696 15.324 Atomic orbital electron populations 1.21064 0.82625 1.07140 1.06166 1.22355 0.98470 0.87448 0.87702 1.77664 0.82852 1.20879 1.34119 1.47781 1.07709 1.07162 1.45134 1.23243 0.80401 1.02052 0.93051 1.22633 1.00141 0.94649 1.04328 1.24551 0.96313 0.93936 0.84134 1.68571 0.97283 1.38423 1.17342 1.20066 0.93663 0.81410 0.92942 1.31039 0.97572 1.24825 1.40996 1.00380 0.72238 0.72724 0.72655 1.93409 1.38258 1.87607 1.77730 1.93487 1.58063 1.68878 1.77748 1.57376 1.20127 1.74879 1.30503 1.21475 0.83085 1.01379 0.99037 1.18362 0.82309 0.90750 0.91353 0.95576 1.21934 1.01354 0.97470 0.98887 1.21485 1.15520 1.08679 1.10943 0.92741 1.25576 0.95997 0.96246 1.00016 1.70006 1.21213 1.24387 1.39457 0.85736 0.78013 0.78630 0.79903 1.19494 1.20585 1.20655 0.87205 0.87230 0.87215 0.75670 0.75058 0.76560 0.92174 0.90849 0.90405 0.91058 0.93665 0.96097 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.98 10.11 71.24 0.72 -2.26 16 2 C 0.20 7.20 7.15 42.73 0.31 7.51 16 3 N -0.33 -11.29 12.66 -47.84 -0.61 -11.90 16 4 N -0.31 -10.20 3.90 -192.50 -0.75 -10.95 16 5 C 0.15 2.92 11.30 83.34 0.94 3.86 16 6 C -0.20 -2.98 10.05 22.13 0.22 -2.76 16 7 C 0.19 4.72 11.27 85.27 0.96 5.68 16 8 N -0.50 -19.86 10.27 -192.55 -1.98 -21.84 16 9 C 0.35 14.37 7.72 133.13 1.03 15.40 16 10 C -0.84 -35.22 6.25 22.52 0.14 -35.08 16 11 S 2.73 122.57 5.73 -56.49 -0.32 122.25 16 12 O -0.98 -41.15 14.38 -128.00 -1.84 -42.99 16 13 O -0.99 -51.77 16.23 -128.00 -2.08 -53.85 16 14 N -0.99 -44.77 3.06 -520.44 -1.59 -46.36 16 15 C 0.10 3.50 9.28 127.77 1.19 4.68 16 16 C 0.28 14.54 2.62 44.24 0.12 14.66 16 17 H 0.03 1.59 6.91 -2.39 -0.02 1.57 16 18 C -0.14 -6.87 8.97 71.98 0.65 -6.22 16 19 C -0.53 -28.49 7.99 25.60 0.20 -28.28 16 20 H 0.05 2.91 7.33 -2.91 -0.02 2.89 16 21 C 0.02 1.16 5.30 84.65 0.45 1.61 16 22 N -0.91 -51.50 11.32 21.45 0.24 -51.26 16 23 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 H 0.11 2.49 8.02 -2.39 -0.02 2.47 16 28 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.11 3.15 5.59 -2.39 -0.01 3.13 16 30 H 0.23 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.23 0.59 8.06 -2.91 -0.02 0.56 16 32 H 0.22 3.62 8.06 -2.91 -0.02 3.59 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.74 7.02 -2.38 -0.02 2.72 16 35 H 0.08 2.37 7.66 -2.39 -0.02 2.35 16 36 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 37 H 0.04 2.08 7.67 -2.39 -0.02 2.06 16 38 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -82.94 339.61 1.10 -81.83 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.08 Total: 11.72 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 6.92 Total: -21.19 kcal Atomic # 7 Polarization: -137.62 SS G_CDS: -4.69 Total: -142.30 kcal Atomic # 8 Polarization: -92.92 SS G_CDS: -3.92 Total: -96.84 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 122.57 SS G_CDS: -0.32 Total: 122.25 kcal Total: -82.94 1.10 -81.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413287786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.218 kcal (2) G-P(sol) polarization free energy of solvation -82.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds